Wall clock time and date at job start Tue Mar 31 2020 13:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38368 * 119.84820 * 2 1 4 4 N 1.48019 * 119.92464 * 0.04220 * 3 2 1 5 5 O 1.21800 * 120.00381 * 173.09789 * 4 3 2 6 6 O 1.21803 * 120.00296 * 353.10469 * 4 3 2 7 7 C 1.37943 * 120.15340 * 180.02562 * 3 2 1 8 8 C 1.39631 * 119.84469 * 0.02562 * 7 3 2 9 9 C 1.47722 * 120.14980 * 180.02562 * 8 7 3 10 10 O 1.21472 * 120.00116 * 359.97438 * 9 8 7 11 11 O 1.34713 * 120.00167 * 179.97438 * 9 8 7 12 12 C 1.45194 * 116.99963 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.46886 * 180.02562 * 12 11 9 14 14 C 1.50707 * 109.46908 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00109 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99629 * 179.97438 * 14 13 12 17 17 N 1.31508 * 120.00177 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99714 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46847 * 90.00179 * 18 16 14 20 20 H 1.48494 * 109.47395 * 210.00011 * 18 16 14 21 21 H 1.48501 * 109.47143 * 330.00444 * 18 16 14 22 22 C 1.39633 * 119.69979 * 0.27007 * 8 7 3 23 23 C 1.37943 * 119.84540 * 359.45129 * 22 8 7 24 24 N 1.48023 * 119.92141 * 180.29826 * 23 22 8 25 25 O 1.21796 * 120.00394 * 6.93322 * 24 23 22 26 26 O 1.21799 * 119.99608 * 186.92867 * 24 23 22 27 27 H 1.09003 * 109.47048 * 90.25469 * 1 2 3 28 28 H 1.09002 * 109.46826 * 210.25866 * 1 2 3 29 29 H 1.08998 * 109.47240 * 330.25417 * 1 2 3 30 30 H 1.07999 * 120.07982 * 179.97438 * 7 3 2 31 31 H 1.09001 * 109.47437 * 299.99851 * 12 11 9 32 32 H 1.08999 * 109.47140 * 59.99864 * 12 11 9 33 33 H 1.08999 * 109.47118 * 299.99618 * 13 12 11 34 34 H 1.08993 * 109.47023 * 60.00079 * 13 12 11 35 35 H 0.97006 * 119.99814 * 179.97438 * 17 16 14 36 36 H 1.07999 * 120.07437 * 179.72808 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1957 1.2001 0.0000 4 7 1.4505 2.4791 0.0009 5 8 2.0488 3.5324 0.1277 6 8 0.2390 2.4782 -0.1249 7 6 3.5751 1.2075 -0.0005 8 6 4.2764 0.0001 -0.0016 9 6 5.7537 0.0001 -0.0016 10 8 6.3610 1.0520 -0.0012 11 8 6.4273 -1.1666 -0.0021 12 6 7.8772 -1.0905 -0.0027 13 6 8.4620 -2.5044 -0.0039 14 6 9.9670 -2.4255 -0.0038 15 1 10.4573 -1.4632 -0.0034 16 6 10.7179 -3.5818 -0.0043 17 7 10.1209 -4.7535 -0.0052 18 14 12.5834 -3.4840 -0.0049 19 1 13.0782 -3.4583 1.3951 20 1 13.1410 -4.6687 -0.7053 21 1 13.0140 -2.2471 -0.7048 22 6 3.5751 -1.2073 -0.0079 23 6 2.1957 -1.2000 -0.0015 24 7 1.4506 -2.4791 -0.0014 25 8 2.0493 -3.5327 0.1204 26 8 0.2387 -2.4778 -0.1231 27 1 -0.3633 -0.0046 -1.0277 28 1 -0.3633 -0.8877 0.5179 29 1 -0.3633 0.8922 0.5099 30 1 4.1114 2.1449 -0.0010 31 1 8.2128 -0.5582 -0.8927 32 1 8.2135 -0.5585 0.8873 33 1 8.1265 -3.0371 0.8859 34 1 8.1257 -3.0359 -0.8940 35 1 10.6492 -5.5671 -0.0059 36 1 4.1114 -2.1447 -0.0132 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051391346.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:51 Heat of formation + Delta-G solvation = -50.930731 kcal Electronic energy + Delta-G solvation = -26457.250074 eV Core-core repulsion = 22107.429107 eV Total energy + Delta-G solvation = -4349.820967 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.093 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.16467 -42.64060 -40.96017 -39.64574 -37.39582 -37.14319 -36.63349 -34.15696 -33.51523 -33.32225 -30.58364 -29.37420 -27.37009 -26.78405 -25.35042 -23.97927 -23.26162 -21.97516 -21.10842 -19.95885 -19.54213 -18.95593 -18.58196 -18.33489 -18.09615 -17.64979 -17.18511 -16.55077 -16.47166 -16.17257 -15.90711 -14.77817 -14.63474 -13.85231 -13.79407 -13.61440 -13.43415 -13.15678 -13.05630 -12.49097 -12.09941 -11.92753 -11.85801 -11.69388 -11.58047 -11.52256 -11.27991 -11.05418 -10.94083 -10.92416 -10.73006 -10.69915 -10.30629 -9.93810 -9.85778 -9.46807 -8.57212 -6.22813 -4.28531 -1.11702 -0.93186 0.08772 0.35642 0.68525 0.83204 1.68985 2.31542 2.58188 3.20587 3.26297 3.27508 3.30217 3.33612 3.47901 3.70165 3.74473 4.21814 4.31457 4.40050 4.67370 4.89477 4.95430 4.99130 5.12858 5.14199 5.35492 5.71045 5.71912 5.80989 5.93473 6.35918 6.45452 7.01421 7.10502 7.31043 7.41913 7.56126 7.76786 8.06582 8.76548 9.37022 10.88395 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.017200 B = 0.002759 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.535582 B =10145.738688 C =11744.292087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.075 3.925 3 C -0.066 4.066 4 N 0.034 4.966 5 O -0.140 6.140 6 O -0.139 6.139 7 C 0.054 3.946 8 C -0.116 4.116 9 C 0.507 3.493 10 O -0.491 6.491 11 O -0.346 6.346 12 C 0.076 3.924 13 C 0.024 3.976 14 C -0.531 4.531 15 H 0.060 0.940 16 C 0.063 3.937 17 N -0.888 5.888 18 Si 0.901 3.099 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.272 1.272 22 C 0.054 3.946 23 C -0.065 4.065 24 N 0.032 4.968 25 O -0.130 6.130 26 O -0.143 6.143 27 H 0.113 0.887 28 H 0.117 0.883 29 H 0.116 0.884 30 H 0.186 0.814 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.031 0.969 34 H 0.030 0.970 35 H 0.265 0.735 36 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.786 9.555 0.020 21.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.073 3.927 3 C -0.150 4.150 4 N 0.555 4.445 5 O -0.357 6.357 6 O -0.354 6.354 7 C 0.035 3.965 8 C -0.119 4.119 9 C 0.349 3.651 10 O -0.380 6.380 11 O -0.262 6.262 12 C 0.004 3.996 13 C -0.013 4.013 14 C -0.569 4.569 15 H 0.078 0.922 16 C -0.140 4.140 17 N -0.525 5.525 18 Si 0.728 3.272 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.197 1.197 22 C 0.035 3.965 23 C -0.149 4.149 24 N 0.553 4.447 25 O -0.349 6.349 26 O -0.357 6.357 27 H 0.131 0.869 28 H 0.135 0.865 29 H 0.134 0.866 30 H 0.204 0.796 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.075 0.925 36 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -18.815 9.646 0.009 21.144 hybrid contribution 0.896 0.035 -0.018 0.897 sum -17.919 9.681 -0.009 20.366 Atomic orbital electron populations 1.22252 0.85483 1.08461 1.06586 1.19800 1.00191 0.88376 0.84355 1.20401 0.91770 0.84424 1.18395 1.43136 1.01131 1.01839 0.98353 1.94630 1.70457 1.18168 1.52439 1.94476 0.95511 1.93094 1.52368 1.21495 0.90843 1.01236 0.82910 1.19049 0.92691 0.91521 1.08676 1.20267 0.86754 0.83687 0.74405 1.90891 1.69390 1.32738 1.44996 1.86571 1.26306 1.31221 1.82069 1.23912 0.70246 1.03791 1.01639 1.19218 0.95186 0.87716 0.99166 1.20918 0.89997 0.93066 1.52935 0.92162 1.24977 0.99212 0.95186 0.94644 1.69959 1.35902 0.97447 1.49215 0.86454 0.84617 0.77819 0.78335 1.20399 1.20956 1.19684 1.21915 0.90987 1.01821 0.81822 1.20556 0.92023 0.84512 1.17819 1.43161 1.01129 1.01876 0.98498 1.94669 1.70385 1.17894 1.51975 1.94469 0.95521 1.93113 1.52574 0.86892 0.86529 0.86617 0.79646 0.91601 0.91577 0.95111 0.95128 0.92523 0.79087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.19 7.89 36.01 0.28 -0.90 16 2 C 0.08 0.63 5.89 -104.53 -0.62 0.02 16 3 C -0.07 -0.59 6.82 -80.01 -0.55 -1.13 16 4 N 0.03 0.34 4.45 33.93 0.15 0.49 16 5 O -0.14 -1.52 18.46 -29.46 -0.54 -2.07 16 6 O -0.14 -1.35 15.21 -29.46 -0.45 -1.80 16 7 C 0.05 0.49 9.10 -39.17 -0.36 0.14 16 8 C -0.12 -1.21 5.87 -104.98 -0.62 -1.82 16 9 C 0.51 7.15 7.90 34.61 0.27 7.42 16 10 O -0.49 -7.97 16.14 -19.24 -0.31 -8.28 16 11 O -0.35 -5.70 9.47 -40.53 -0.38 -6.09 16 12 C 0.08 1.47 5.41 37.16 0.20 1.68 16 13 C 0.02 0.58 5.35 -27.88 -0.15 0.43 16 14 C -0.53 -14.04 9.11 -34.44 -0.31 -14.36 16 15 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -25.18 13.29 55.43 0.74 -24.44 16 18 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 22 C 0.05 0.51 9.12 -39.17 -0.36 0.15 16 23 C -0.07 -0.61 6.82 -80.01 -0.55 -1.15 16 24 N 0.03 0.34 4.45 33.93 0.15 0.49 16 25 O -0.13 -1.58 18.46 -29.46 -0.54 -2.13 16 26 O -0.14 -1.48 15.22 -29.46 -0.45 -1.93 16 27 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.12 0.81 5.35 -51.93 -0.28 0.53 16 29 H 0.12 0.77 5.32 -51.94 -0.28 0.50 16 30 H 0.19 1.58 7.21 -52.49 -0.38 1.20 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.27 7.08 8.31 -40.82 -0.34 6.75 16 36 H 0.19 1.81 7.17 -52.49 -0.38 1.43 16 LS Contribution 332.57 15.07 5.01 5.01 Total: -1.00 -29.09 332.57 -7.45 -36.55 By element: Atomic # 1 Polarization: -0.43 SS G_CDS: -2.96 Total: -3.40 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -2.84 Total: -7.93 kcal Atomic # 7 Polarization: -24.50 SS G_CDS: 1.04 Total: -23.46 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -2.68 Total: -22.28 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.09 -7.45 -36.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051391346.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.385 kcal (2) G-P(sol) polarization free energy of solvation -29.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds