Wall clock time and date at job start Tue Mar 31 2020 14:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86801 * 120.00431 * 2 1 4 4 H 1.48505 * 109.46852 * 270.00151 * 3 2 1 5 5 H 1.48501 * 109.46954 * 29.99520 * 3 2 1 6 6 H 1.48495 * 109.47582 * 149.99997 * 3 2 1 7 7 C 1.39936 * 119.99867 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00078 * 196.78926 * 7 2 1 9 9 C 1.41439 * 120.00126 * 16.79141 * 7 2 1 10 10 C 1.40787 * 120.17553 * 205.16898 * 9 7 2 11 11 C 1.37721 * 120.04014 * 180.02562 * 10 9 7 12 12 C 1.38367 * 120.41042 * 359.70246 * 11 10 9 13 13 C 1.39894 * 120.35853 * 0.55906 * 12 11 10 14 14 C 1.47856 * 120.02413 * 179.74204 * 13 12 11 15 15 O 1.21562 * 119.99719 * 179.72463 * 14 13 12 16 16 N 1.34775 * 120.00269 * 359.71866 * 14 13 12 17 17 C 1.39984 * 120.00018 * 185.11880 * 16 14 13 18 18 C 1.39033 * 119.98492 * 214.55075 * 17 16 14 19 19 C 1.38033 * 120.23402 * 180.29448 * 18 17 16 20 20 C 1.38637 * 120.01475 * 359.41770 * 19 18 17 21 21 O 1.35638 * 132.90342 * 180.26948 * 20 19 18 22 22 C 1.34214 * 109.17321 * 179.97438 * 21 20 19 23 23 O 1.21606 * 125.26315 * 180.02562 * 22 21 20 24 24 N 1.34767 * 109.46680 * 0.02562 * 22 21 20 25 25 H 0.97002 * 126.24838 * 179.97438 * 24 22 21 26 26 C 1.39472 * 107.50394 * 0.02562 * 24 22 21 27 27 C 1.38544 * 133.29279 * 179.97438 * 26 24 22 28 28 C 1.39043 * 119.94706 * 359.46608 * 13 12 11 29 29 H 0.97001 * 119.99737 * 0.02562 * 1 2 3 30 30 H 1.07998 * 119.98326 * 0.02592 * 10 9 7 31 31 H 1.07995 * 119.79323 * 180.02562 * 11 10 9 32 32 H 1.08007 * 119.81781 * 180.29501 * 12 11 10 33 33 H 0.96998 * 119.99939 * 5.12197 * 16 14 13 34 34 H 1.07993 * 119.87754 * 359.97438 * 18 17 16 35 35 H 1.08000 * 119.99028 * 179.68668 * 19 18 17 36 36 H 1.07991 * 120.11317 * 0.04650 * 27 26 24 37 37 H 1.07995 * 120.20751 * 180.23643 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4899 2.0463 -1.4001 5 1 1.4398 2.6527 0.6999 6 1 3.5399 1.4401 0.7000 7 6 2.0079 -1.2119 0.0005 8 1 3.0534 -1.2318 0.2707 9 6 1.3459 -2.4108 -0.3528 10 6 1.8189 -3.6477 0.1254 11 6 1.1725 -4.8135 -0.2208 12 6 0.0532 -4.7789 -1.0335 13 6 -0.4281 -3.5598 -1.5227 14 6 -1.6214 -3.5320 -2.3952 15 8 -2.0421 -2.4719 -2.8159 16 7 -2.2426 -4.6819 -2.7243 17 6 -3.3057 -4.6673 -3.6349 18 6 -4.3660 -5.5530 -3.4793 19 6 -5.4140 -5.5472 -4.3776 20 6 -5.4179 -4.6481 -5.4329 21 8 -6.2923 -4.4136 -6.4429 22 6 -5.8221 -3.4184 -7.2109 23 8 -6.3750 -2.9717 -8.1976 24 7 -4.6425 -2.9907 -6.7192 25 1 -4.0916 -2.2813 -7.0857 26 6 -4.3577 -3.7549 -5.5877 27 6 -3.3030 -3.7659 -4.6895 28 6 0.2132 -2.3738 -1.1829 29 1 -0.4850 0.8401 -0.0004 30 1 2.6890 -3.6824 0.7641 31 1 1.5384 -5.7600 0.1486 32 1 -0.4492 -5.6985 -1.2952 33 1 -1.9530 -5.5195 -2.3301 34 1 -4.3672 -6.2514 -2.6556 35 1 -6.2332 -6.2404 -4.2559 36 1 -2.4828 -3.0735 -4.8084 37 1 -0.1570 -1.4300 -1.5550 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052426353.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:06 Heat of formation + Delta-G solvation = -30.780357 kcal Electronic energy + Delta-G solvation = -25431.403202 eV Core-core repulsion = 21525.598035 eV Total energy + Delta-G solvation = -3905.805167 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.38177 -40.25474 -38.50004 -37.62301 -36.96620 -35.60951 -34.22000 -33.75238 -30.84724 -30.12943 -29.60737 -28.62491 -25.49279 -24.11150 -23.64375 -23.01285 -22.25437 -21.12344 -19.88419 -18.95034 -18.70482 -17.80279 -17.47712 -16.88654 -16.22941 -15.80967 -15.56581 -15.17407 -14.95473 -14.81669 -14.56720 -14.13184 -13.79252 -13.50386 -13.36105 -13.21819 -12.91275 -12.82496 -12.67964 -11.90666 -11.80597 -11.51104 -11.29188 -11.21766 -11.16834 -10.87448 -10.62613 -10.20736 -10.04626 -9.85535 -9.36657 -9.34400 -8.68664 -8.09410 -7.79505 -7.67775 -6.92735 -4.55571 0.87514 0.88128 1.96576 2.09384 2.29267 2.66915 2.68791 3.00215 3.03406 3.04288 3.22218 3.29864 3.68208 3.82060 4.16972 4.48012 4.64948 4.89451 4.90665 5.00655 5.32136 5.43052 5.43682 5.75602 5.78887 5.89373 6.03029 6.09198 6.11442 6.28781 6.56212 6.65202 6.81191 6.84355 6.97470 7.06399 7.20236 7.44397 7.51177 7.54817 7.69360 7.82482 8.01233 8.34806 8.50328 8.66523 8.68292 10.01769 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.016525 B = 0.002920 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.971706 B = 9587.287445 C =10970.139883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.073 3.927 3 Si 0.912 3.088 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.457 4.457 8 H 0.083 0.917 9 C 0.098 3.902 10 C -0.208 4.208 11 C -0.096 4.096 12 C -0.219 4.219 13 C -0.132 4.132 14 C 0.566 3.434 15 O -0.522 6.522 16 N -0.676 5.676 17 C 0.189 3.811 18 C -0.137 4.137 19 C -0.056 4.056 20 C 0.006 3.994 21 O -0.236 6.236 22 C 0.640 3.360 23 O -0.495 6.495 24 N -0.645 5.645 25 H 0.444 0.556 26 C 0.091 3.909 27 C -0.109 4.109 28 C -0.087 4.087 29 H 0.286 0.714 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.415 0.585 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.150 0.850 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.750 -9.417 -5.564 12.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.147 4.147 3 Si 0.736 3.264 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.486 4.486 8 H 0.101 0.899 9 C 0.095 3.905 10 C -0.227 4.227 11 C -0.114 4.114 12 C -0.239 4.239 13 C -0.135 4.135 14 C 0.359 3.641 15 O -0.398 6.398 16 N -0.323 5.323 17 C 0.092 3.908 18 C -0.158 4.158 19 C -0.075 4.075 20 C -0.041 4.041 21 O -0.142 6.142 22 C 0.393 3.607 23 O -0.379 6.379 24 N -0.302 5.302 25 H 0.287 0.713 26 C -0.009 4.009 27 C -0.132 4.132 28 C -0.107 4.107 29 H 0.097 0.903 30 H 0.116 0.884 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.254 0.746 34 H 0.164 0.836 35 H 0.162 0.838 36 H 0.168 0.832 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.822 -8.407 -6.390 12.572 hybrid contribution 0.764 0.773 0.099 1.091 sum -6.059 -7.634 -6.291 11.600 Atomic orbital electron populations 1.69767 1.07578 1.29939 1.33448 1.25978 0.94818 1.01652 0.92228 0.86237 0.80377 0.80252 0.79508 1.19101 1.20142 1.18507 1.19629 0.97929 0.90848 1.40176 0.89919 1.17607 0.91183 0.92568 0.89125 1.21151 1.03372 0.92782 1.05442 1.20450 0.95816 0.96857 0.98268 1.20320 1.01355 0.94504 1.07709 1.19308 0.96095 0.95689 1.02393 1.19093 0.83163 0.82224 0.79632 1.90731 1.65111 1.29944 1.54008 1.43717 1.32687 1.11970 1.43906 1.17391 0.88724 0.95805 0.88903 1.20734 0.92119 1.02378 1.00614 1.19715 0.99571 0.97304 0.90920 1.18922 0.89643 1.01768 0.93788 1.84965 1.44382 1.48950 1.35907 1.18478 0.80310 0.78974 0.82892 1.91184 1.63170 1.59833 1.23723 1.43600 1.22627 1.37225 1.26747 0.71284 1.18193 0.97328 0.94459 0.90910 1.20032 0.98503 1.02426 0.92274 1.21655 0.96333 0.96201 0.96526 0.90312 0.88429 0.88659 0.89095 0.74617 0.83596 0.83755 0.83224 0.84705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.60 10.94 55.55 0.61 -18.99 16 2 C 0.07 1.73 5.16 -17.34 -0.09 1.64 16 3 Si 0.91 17.86 29.59 -169.99 -5.03 12.83 16 4 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 5 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 6 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 7 C -0.46 -11.30 9.05 -37.73 -0.34 -11.64 16 8 H 0.08 1.94 7.90 -52.48 -0.41 1.53 16 9 C 0.10 2.41 5.57 -106.87 -0.59 1.81 16 10 C -0.21 -4.55 9.78 -38.81 -0.38 -4.93 16 11 C -0.10 -1.84 10.01 -39.72 -0.40 -2.24 16 12 C -0.22 -4.05 9.55 -38.91 -0.37 -4.42 16 13 C -0.13 -2.76 5.87 -105.04 -0.62 -3.38 16 14 C 0.57 10.71 7.50 -12.33 -0.09 10.61 16 15 O -0.52 -11.33 14.07 5.31 0.07 -11.26 16 16 N -0.68 -9.38 5.28 -10.68 -0.06 -9.43 16 17 C 0.19 2.40 6.26 -83.66 -0.52 1.87 16 18 C -0.14 -1.31 9.95 -39.36 -0.39 -1.70 16 19 C -0.06 -0.52 10.05 -39.51 -0.40 -0.92 16 20 C 0.01 0.07 7.35 -38.97 -0.29 -0.22 16 21 O -0.24 -3.12 10.72 -22.19 -0.24 -3.36 16 22 C 0.64 8.77 9.44 54.05 0.51 9.28 16 23 O -0.50 -8.04 18.05 -19.01 -0.34 -8.38 16 24 N -0.65 -7.47 6.22 -14.40 -0.09 -7.56 16 25 H 0.44 4.03 8.96 -40.82 -0.37 3.67 16 26 C 0.09 1.13 7.25 -83.80 -0.61 0.53 16 27 C -0.11 -1.48 8.67 -39.28 -0.34 -1.82 16 28 C -0.09 -2.13 8.23 -38.44 -0.32 -2.45 16 29 H 0.29 6.59 8.30 -40.82 -0.34 6.25 16 30 H 0.10 1.99 8.06 -52.49 -0.42 1.57 16 31 H 0.10 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.09 1.31 6.39 -52.48 -0.34 0.97 16 33 H 0.42 4.58 6.85 -40.82 -0.28 4.30 16 34 H 0.15 0.98 8.06 -52.49 -0.42 0.55 16 35 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.15 2.26 6.47 -52.49 -0.34 1.92 16 37 H 0.14 3.58 5.75 -52.49 -0.30 3.28 16 LS Contribution 328.75 15.07 4.95 4.95 Total: -1.00 -29.60 328.75 -8.22 -37.82 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -2.86 Total: 11.35 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -5.24 Total: -7.96 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 0.46 Total: -35.99 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.51 Total: -23.00 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.83 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.60 -8.22 -37.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052426353.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.044 kcal (2) G-P(sol) polarization free energy of solvation -29.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds