Wall clock time and date at job start Tue Mar 31 2020 14:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86801 * 120.00431 * 2 1 4 4 H 1.48505 * 109.46852 * 270.00151 * 3 2 1 5 5 H 1.48501 * 109.46954 * 29.99520 * 3 2 1 6 6 H 1.48495 * 109.47582 * 149.99997 * 3 2 1 7 7 C 1.39936 * 119.99867 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00078 * 196.78926 * 7 2 1 9 9 C 1.41439 * 120.00126 * 16.79141 * 7 2 1 10 10 C 1.40787 * 120.17553 * 205.16898 * 9 7 2 11 11 C 1.37721 * 120.04014 * 180.02562 * 10 9 7 12 12 C 1.38367 * 120.41042 * 359.70246 * 11 10 9 13 13 C 1.39894 * 120.35853 * 0.55906 * 12 11 10 14 14 C 1.47856 * 120.02413 * 179.74204 * 13 12 11 15 15 O 1.21562 * 119.99719 * 179.72463 * 14 13 12 16 16 N 1.34775 * 120.00269 * 359.71866 * 14 13 12 17 17 C 1.39984 * 120.00018 * 185.11880 * 16 14 13 18 18 C 1.39033 * 119.98492 * 214.55075 * 17 16 14 19 19 C 1.38033 * 120.23402 * 180.29448 * 18 17 16 20 20 C 1.38637 * 120.01475 * 359.41770 * 19 18 17 21 21 O 1.35638 * 132.90342 * 180.26948 * 20 19 18 22 22 C 1.34214 * 109.17321 * 179.97438 * 21 20 19 23 23 O 1.21606 * 125.26315 * 180.02562 * 22 21 20 24 24 N 1.34767 * 109.46680 * 0.02562 * 22 21 20 25 25 H 0.97002 * 126.24838 * 179.97438 * 24 22 21 26 26 C 1.39472 * 107.50394 * 0.02562 * 24 22 21 27 27 C 1.38544 * 133.29279 * 179.97438 * 26 24 22 28 28 C 1.39043 * 119.94706 * 359.46608 * 13 12 11 29 29 H 0.97001 * 119.99737 * 0.02562 * 1 2 3 30 30 H 1.07998 * 119.98326 * 0.02592 * 10 9 7 31 31 H 1.07995 * 119.79323 * 180.02562 * 11 10 9 32 32 H 1.08007 * 119.81781 * 180.29501 * 12 11 10 33 33 H 0.96998 * 119.99939 * 5.12197 * 16 14 13 34 34 H 1.07993 * 119.87754 * 359.97438 * 18 17 16 35 35 H 1.08000 * 119.99028 * 179.68668 * 19 18 17 36 36 H 1.07991 * 120.11317 * 0.04650 * 27 26 24 37 37 H 1.07995 * 120.20751 * 180.23643 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4899 2.0463 -1.4001 5 1 1.4398 2.6527 0.6999 6 1 3.5399 1.4401 0.7000 7 6 2.0079 -1.2119 0.0005 8 1 3.0534 -1.2318 0.2707 9 6 1.3459 -2.4108 -0.3528 10 6 1.8189 -3.6477 0.1254 11 6 1.1725 -4.8135 -0.2208 12 6 0.0532 -4.7789 -1.0335 13 6 -0.4281 -3.5598 -1.5227 14 6 -1.6214 -3.5320 -2.3952 15 8 -2.0421 -2.4719 -2.8159 16 7 -2.2426 -4.6819 -2.7243 17 6 -3.3057 -4.6673 -3.6349 18 6 -4.3660 -5.5530 -3.4793 19 6 -5.4140 -5.5472 -4.3776 20 6 -5.4179 -4.6481 -5.4329 21 8 -6.2923 -4.4136 -6.4429 22 6 -5.8221 -3.4184 -7.2109 23 8 -6.3750 -2.9717 -8.1976 24 7 -4.6425 -2.9907 -6.7192 25 1 -4.0916 -2.2813 -7.0857 26 6 -4.3577 -3.7549 -5.5877 27 6 -3.3030 -3.7659 -4.6895 28 6 0.2132 -2.3738 -1.1829 29 1 -0.4850 0.8401 -0.0004 30 1 2.6890 -3.6824 0.7641 31 1 1.5384 -5.7600 0.1486 32 1 -0.4492 -5.6985 -1.2952 33 1 -1.9530 -5.5195 -2.3301 34 1 -4.3672 -6.2514 -2.6556 35 1 -6.2332 -6.2404 -4.2559 36 1 -2.4828 -3.0735 -4.8084 37 1 -0.1570 -1.4300 -1.5550 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052426353.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:06 Heat of formation + Delta-G solvation = -50.082629 kcal Electronic energy + Delta-G solvation = -25432.240211 eV Core-core repulsion = 21525.598035 eV Total energy + Delta-G solvation = -3906.642176 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.38694 -41.55555 -39.70894 -38.98591 -38.30683 -36.66293 -35.69384 -35.18653 -32.28451 -31.35380 -31.15780 -29.72673 -27.21944 -25.38371 -24.64433 -24.00686 -23.53694 -22.78088 -21.31019 -20.07078 -19.80837 -19.27712 -18.52342 -18.03471 -17.73920 -17.03242 -16.81747 -16.57212 -16.37985 -16.11645 -15.63399 -15.57736 -15.09937 -14.77280 -14.59071 -14.51452 -14.27751 -14.02055 -13.92185 -13.48347 -12.98072 -12.91049 -12.82796 -12.59959 -12.49443 -12.23437 -12.18803 -11.88371 -11.50619 -11.15314 -11.09292 -10.85096 -9.67884 -9.53142 -9.38018 -9.04425 -8.66473 -6.38394 -0.15645 -0.01462 0.41527 1.01351 1.09697 1.23345 1.36906 1.47233 1.50002 1.68762 1.97756 2.08508 2.18498 2.50581 2.78715 3.24102 3.68287 3.69815 3.88602 4.00411 4.09530 4.15942 4.44277 4.52993 4.61259 4.74534 4.91040 4.95466 5.07940 5.13524 5.18018 5.21479 5.31667 5.34700 5.51001 5.57287 5.84357 5.92145 5.98712 6.05591 6.28564 6.41669 6.49517 6.62144 6.88612 6.93958 7.13631 8.29662 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.016525 B = 0.002920 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.971706 B = 9587.287445 C =10970.139883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.032 3.968 3 Si 0.979 3.021 4 H -0.267 1.267 5 H -0.271 1.271 6 H -0.252 1.252 7 C -0.497 4.497 8 H 0.082 0.918 9 C 0.065 3.935 10 C -0.213 4.213 11 C -0.097 4.097 12 C -0.190 4.190 13 C -0.140 4.140 14 C 0.566 3.434 15 O -0.561 6.561 16 N -0.652 5.652 17 C 0.168 3.832 18 C -0.112 4.112 19 C -0.040 4.040 20 C -0.002 4.002 21 O -0.238 6.238 22 C 0.639 3.361 23 O -0.527 6.527 24 N -0.635 5.635 25 H 0.452 0.548 26 C 0.078 3.922 27 C -0.124 4.124 28 C -0.126 4.126 29 H 0.286 0.714 30 H 0.106 0.894 31 H 0.141 0.859 32 H 0.146 0.854 33 H 0.432 0.568 34 H 0.189 0.811 35 H 0.185 0.815 36 H 0.124 0.876 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.517 -13.097 -4.871 15.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.183 4.183 3 Si 0.800 3.200 4 H -0.192 1.192 5 H -0.196 1.196 6 H -0.176 1.176 7 C -0.527 4.527 8 H 0.100 0.900 9 C 0.062 3.938 10 C -0.233 4.233 11 C -0.115 4.115 12 C -0.210 4.210 13 C -0.143 4.143 14 C 0.358 3.642 15 O -0.439 6.439 16 N -0.300 5.300 17 C 0.072 3.928 18 C -0.132 4.132 19 C -0.058 4.058 20 C -0.049 4.049 21 O -0.143 6.143 22 C 0.393 3.607 23 O -0.413 6.413 24 N -0.292 5.292 25 H 0.297 0.703 26 C -0.022 4.022 27 C -0.147 4.147 28 C -0.146 4.146 29 H 0.096 0.904 30 H 0.125 0.875 31 H 0.158 0.842 32 H 0.164 0.836 33 H 0.274 0.726 34 H 0.206 0.794 35 H 0.202 0.798 36 H 0.142 0.858 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.573 -12.153 -5.685 15.406 hybrid contribution 0.928 1.612 -0.148 1.866 sum -6.646 -10.541 -5.833 13.759 Atomic orbital electron populations 1.69865 1.09027 1.30477 1.35710 1.26765 0.95412 1.04695 0.91458 0.85239 0.79293 0.76147 0.79318 1.19187 1.19584 1.17551 1.19859 0.98162 0.92114 1.42537 0.90002 1.17937 0.91966 0.93859 0.89992 1.21457 1.03707 0.92972 1.05148 1.20958 0.95373 0.97631 0.97511 1.20931 1.00168 0.95317 1.04577 1.19614 0.96603 0.95678 1.02389 1.18831 0.82946 0.83099 0.79330 1.90724 1.66037 1.31835 1.55341 1.43287 1.32359 1.10909 1.43429 1.17626 0.89550 0.97054 0.88583 1.21138 0.90057 1.01058 1.00977 1.20231 1.00231 0.96419 0.88967 1.19399 0.89020 1.02281 0.94185 1.84938 1.44646 1.48627 1.36138 1.18447 0.80481 0.79050 0.82696 1.91156 1.64079 1.60966 1.25125 1.43541 1.22093 1.37137 1.26445 0.70329 1.18199 0.97651 0.95195 0.91106 1.19908 0.98386 1.02832 0.93597 1.21449 0.98038 0.96438 0.98724 0.90382 0.87548 0.84163 0.83636 0.72629 0.79401 0.79763 0.85760 0.88207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.18 10.94 21.82 0.24 -43.94 16 2 C 0.03 1.59 5.16 85.25 0.44 2.03 16 3 Si 0.98 38.43 29.59 68.60 2.03 40.46 16 4 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 5 H -0.27 -10.25 7.11 99.48 0.71 -9.55 16 6 H -0.25 -9.38 7.11 99.48 0.71 -8.67 16 7 C -0.50 -25.95 9.05 23.47 0.21 -25.73 16 8 H 0.08 4.06 7.90 -2.91 -0.02 4.04 16 9 C 0.06 3.30 5.57 -21.32 -0.12 3.19 16 10 C -0.21 -9.21 9.78 22.77 0.22 -8.98 16 11 C -0.10 -3.39 10.01 22.18 0.22 -3.16 16 12 C -0.19 -6.33 9.55 22.70 0.22 -6.11 16 13 C -0.14 -5.80 5.87 -20.14 -0.12 -5.92 16 14 C 0.57 21.18 7.50 86.79 0.65 21.83 16 15 O -0.56 -25.36 14.07 -3.91 -0.06 -25.41 16 16 N -0.65 -16.19 5.28 -305.98 -1.62 -17.81 16 17 C 0.17 3.80 6.26 38.15 0.24 4.04 16 18 C -0.11 -1.56 9.95 22.41 0.22 -1.34 16 19 C -0.04 -0.55 10.05 22.32 0.22 -0.33 16 20 C 0.00 -0.05 7.35 22.67 0.17 0.12 16 21 O -0.24 -5.94 10.72 7.81 0.08 -5.85 16 22 C 0.64 17.40 9.44 129.79 1.23 18.63 16 23 O -0.53 -17.29 18.05 19.17 0.35 -16.94 16 24 N -0.63 -14.81 6.22 -430.07 -2.68 -17.49 16 25 H 0.45 8.58 8.96 -92.71 -0.83 7.75 16 26 C 0.08 1.89 7.25 38.30 0.28 2.17 16 27 C -0.12 -3.31 8.67 22.46 0.19 -3.11 16 28 C -0.13 -6.46 8.23 23.01 0.19 -6.27 16 29 H 0.29 14.17 8.30 -92.71 -0.77 13.40 16 30 H 0.11 4.28 8.06 -2.91 -0.02 4.26 16 31 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 32 H 0.15 3.22 6.39 -2.91 -0.02 3.20 16 33 H 0.43 7.33 6.85 -92.71 -0.64 6.70 16 34 H 0.19 1.13 8.06 -2.91 -0.02 1.10 16 35 H 0.19 1.20 8.06 -2.91 -0.02 1.17 16 36 H 0.12 3.96 6.47 -2.92 -0.02 3.94 16 37 H 0.10 5.77 5.75 -2.91 -0.02 5.75 16 Total: -1.00 -71.38 328.75 2.53 -68.84 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: -0.29 Total: 27.11 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: 4.47 Total: -8.97 kcal Atomic # 7 Polarization: -75.18 SS G_CDS: -4.05 Total: -79.24 kcal Atomic # 8 Polarization: -48.58 SS G_CDS: 0.37 Total: -48.21 kcal Atomic # 14 Polarization: 38.43 SS G_CDS: 2.03 Total: 40.46 kcal Total: -71.38 2.53 -68.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052426353.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.760 kcal (2) G-P(sol) polarization free energy of solvation -71.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds