Wall clock time and date at job start Tue Mar 31 2020 14:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86798 * 119.99850 * 2 1 4 4 H 1.48503 * 109.47013 * 275.40956 * 3 2 1 5 5 H 1.48498 * 109.47142 * 35.40695 * 3 2 1 6 6 H 1.48500 * 109.47434 * 155.40746 * 3 2 1 7 7 C 1.39936 * 120.00121 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99640 * 341.82263 * 7 2 1 9 9 C 1.41432 * 119.99939 * 161.82956 * 7 2 1 10 10 C 1.40782 * 120.17716 * 150.22344 * 9 7 2 11 11 C 1.37700 * 120.01908 * 179.72114 * 10 9 7 12 12 C 1.38394 * 120.40377 * 359.97438 * 11 10 9 13 13 C 1.39809 * 120.36212 * 0.02562 * 12 11 10 14 14 C 1.48032 * 120.01570 * 180.02562 * 13 12 11 15 15 O 1.35244 * 120.00244 * 180.02562 * 14 13 12 16 16 N 1.29982 * 120.00005 * 359.97438 * 14 13 12 17 17 S 1.65602 * 119.99750 * 180.02562 * 16 14 13 18 18 O 1.42101 * 106.39932 * 293.53530 * 17 16 14 19 19 O 1.42094 * 106.40288 * 66.45922 * 17 16 14 20 20 N 1.65600 * 107.21560 * 179.97438 * 17 16 14 21 21 C 1.47020 * 125.64859 * 269.69200 * 20 17 16 22 22 C 1.54314 * 107.27539 * 180.96873 * 21 20 17 23 23 C 1.55156 * 102.86398 * 22.52222 * 22 21 20 24 24 C 1.47429 * 125.64805 * 89.99372 * 20 17 16 25 25 C 1.38940 * 119.97028 * 0.04113 * 13 12 11 26 26 H 0.96999 * 119.99964 * 0.02562 * 1 2 3 27 27 H 1.07998 * 119.99184 * 359.69850 * 10 9 7 28 28 H 1.08005 * 119.79788 * 179.97438 * 11 10 9 29 29 H 1.08005 * 119.81800 * 180.02562 * 12 11 10 30 30 H 0.96695 * 114.00203 * 180.02562 * 15 14 13 31 31 H 1.09001 * 109.87665 * 300.51099 * 21 20 17 32 32 H 1.09000 * 109.88189 * 61.67508 * 21 20 17 33 33 H 1.09003 * 110.92040 * 264.10561 * 22 21 20 34 34 H 1.09001 * 110.58831 * 140.78458 * 22 21 20 35 35 H 1.09001 * 111.00302 * 206.23035 * 23 22 21 36 36 H 1.09002 * 111.00169 * 82.37938 * 23 22 21 37 37 H 1.08996 * 110.37180 * 274.67459 * 24 20 17 38 38 H 1.09002 * 110.36474 * 36.88829 * 24 20 17 39 39 H 1.08002 * 120.19921 * 179.97438 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3754 2.1124 -1.3939 5 1 1.5015 2.6170 0.8112 6 1 3.5923 1.4100 0.5826 7 6 2.0080 -1.2119 0.0005 8 1 1.5084 -2.1237 0.2928 9 6 3.3695 -1.2425 -0.3814 10 6 4.2367 -2.2065 0.1669 11 6 5.5603 -2.2370 -0.2116 12 6 6.0471 -1.3243 -1.1310 13 6 5.2004 -0.3600 -1.6858 14 6 5.7291 0.6122 -2.6690 15 8 4.9099 1.5452 -3.2051 16 7 6.9809 0.5699 -3.0163 17 16 7.5725 1.6579 -4.1156 18 8 6.9381 1.3635 -5.3527 19 8 7.5071 2.9334 -3.4928 20 7 9.1806 1.3209 -4.3222 21 6 10.2846 1.9019 -3.5444 22 6 11.5977 1.3150 -4.1037 23 6 11.1977 0.8784 -5.5378 24 6 9.7427 0.3932 -5.3208 25 6 3.8625 -0.3144 -1.3138 26 1 -0.4850 0.8400 -0.0004 27 1 3.8639 -2.9220 0.8848 28 1 6.2226 -2.9778 0.2116 29 1 7.0869 -1.3571 -1.4214 30 1 5.3448 2.1344 -3.8366 31 1 10.2848 2.9863 -3.6542 32 1 10.1789 1.6335 -2.4933 33 1 11.9219 0.4565 -3.5155 34 1 12.3756 2.0779 -4.1356 35 1 11.8323 0.0651 -5.8899 36 1 11.2294 1.7228 -6.2264 37 1 9.7362 -0.6269 -4.9369 38 1 9.1789 0.4510 -6.2519 39 1 3.2052 0.4292 -1.7397 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052771351.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:22 Heat of formation + Delta-G solvation = -68.738971 kcal Electronic energy + Delta-G solvation = -25233.292271 eV Core-core repulsion = 21461.285046 eV Total energy + Delta-G solvation = -3772.007225 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.95277 -38.51876 -37.78904 -37.28088 -35.96350 -34.12194 -33.43848 -31.17725 -30.63872 -30.39045 -29.24158 -25.35203 -24.26337 -22.87212 -21.74747 -21.50059 -20.15993 -19.74703 -18.46516 -18.02961 -17.56290 -16.58185 -16.33617 -15.89342 -15.49623 -14.90739 -14.74432 -14.59449 -13.99691 -13.92537 -13.88689 -13.55051 -13.21140 -12.91138 -12.76025 -12.47527 -12.32912 -12.23098 -12.14608 -11.83100 -11.80010 -11.59471 -11.44616 -11.04938 -11.00816 -10.93434 -10.70780 -10.46441 -10.14139 -10.07802 -9.85491 -9.28689 -9.19266 -8.10476 -7.87420 -7.07662 -4.65139 0.43564 0.96468 2.43887 2.68612 2.77525 2.97309 3.09721 3.15411 3.23616 3.29014 3.88215 4.11963 4.24806 4.32140 4.62067 4.72259 5.03341 5.15423 5.18569 5.24769 5.34043 5.45551 5.52988 5.57614 5.60339 5.70671 5.77970 5.85321 5.96333 6.08906 6.20733 6.26748 6.42573 6.52950 6.81079 7.04516 7.15936 7.38820 7.47660 7.59514 7.79945 8.16008 8.38322 8.61711 9.94096 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.022071 B = 0.003680 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.341065 B = 7606.175080 C = 8286.692175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.086 3.914 3 Si 0.893 3.107 4 H -0.260 1.260 5 H -0.285 1.285 6 H -0.243 1.243 7 C -0.444 4.444 8 H 0.096 0.904 9 C 0.077 3.923 10 C -0.165 4.165 11 C -0.101 4.101 12 C -0.157 4.157 13 C -0.051 4.051 14 C 0.557 3.443 15 O -0.486 6.486 16 N -1.013 6.013 17 S 2.739 3.261 18 O -0.994 6.994 19 O -0.995 6.995 20 N -0.995 5.995 21 C 0.120 3.880 22 C -0.127 4.127 23 C -0.129 4.129 24 C 0.116 3.884 25 C -0.179 4.179 26 H 0.288 0.712 27 H 0.110 0.890 28 H 0.108 0.892 29 H 0.120 0.880 30 H 0.385 0.615 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.188 1.912 -6.586 19.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.134 4.134 3 Si 0.718 3.282 4 H -0.185 1.185 5 H -0.211 1.211 6 H -0.166 1.166 7 C -0.472 4.472 8 H 0.114 0.886 9 C 0.074 3.926 10 C -0.185 4.185 11 C -0.119 4.119 12 C -0.178 4.178 13 C -0.055 4.055 14 C 0.345 3.655 15 O -0.278 6.278 16 N -0.881 5.881 17 S 2.750 3.250 18 O -0.977 6.977 19 O -0.977 6.977 20 N -0.837 5.837 21 C -0.005 4.005 22 C -0.166 4.166 23 C -0.168 4.168 24 C -0.009 4.009 25 C -0.201 4.201 26 H 0.098 0.902 27 H 0.128 0.872 28 H 0.127 0.873 29 H 0.138 0.862 30 H 0.241 0.759 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 17.467 2.219 -6.610 18.807 hybrid contribution 0.404 1.397 -0.587 1.568 sum 17.871 3.616 -7.197 19.602 Atomic orbital electron populations 1.69674 1.08040 1.30546 1.34048 1.26133 0.94759 1.01637 0.90889 0.86573 0.81512 0.80227 0.79863 1.18521 1.21143 1.16587 1.19468 0.92717 0.96344 1.38703 0.88576 1.17643 0.93540 0.91150 0.90271 1.21369 0.92831 1.02383 1.01932 1.20681 0.95632 0.98067 0.97521 1.20568 0.98856 0.97082 1.01246 1.17706 0.94656 0.95639 0.97465 1.22565 0.81515 0.80233 0.81192 1.85259 1.42774 1.43021 1.56747 1.74116 1.20242 1.51110 1.42597 1.03279 0.73477 0.73726 0.74472 1.93655 1.72961 1.85147 1.45914 1.93654 1.85625 1.41376 1.77068 1.58132 1.21678 1.57507 1.46347 1.21744 0.85531 0.97891 0.95327 1.22634 0.96293 1.01449 0.96263 1.22767 0.95213 1.01718 0.97115 1.22087 0.94425 0.92922 0.91458 1.21413 0.93605 1.03692 1.01342 0.90153 0.87189 0.87350 0.86169 0.75920 0.91174 0.91235 0.90280 0.90065 0.89729 0.90607 0.91064 0.90043 0.86546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.52 13.93 55.55 0.77 -19.75 16 2 C 0.09 2.17 5.40 -17.34 -0.09 2.07 16 3 Si 0.89 20.18 24.52 -169.99 -4.17 16.01 16 4 H -0.26 -5.82 6.71 56.52 0.38 -5.44 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.24 -5.56 6.87 56.52 0.39 -5.18 16 7 C -0.44 -11.26 9.57 -37.73 -0.36 -11.62 16 8 H 0.10 2.51 8.06 -52.48 -0.42 2.09 16 9 C 0.08 1.82 5.10 -106.87 -0.54 1.27 16 10 C -0.17 -3.42 9.78 -38.82 -0.38 -3.80 16 11 C -0.10 -1.88 10.01 -39.72 -0.40 -2.27 16 12 C -0.16 -3.06 9.58 -38.94 -0.37 -3.43 16 13 C -0.05 -1.09 5.87 -105.03 -0.62 -1.71 16 14 C 0.56 11.27 7.89 -14.32 -0.11 11.16 16 15 O -0.49 -9.55 12.80 -17.61 -0.23 -9.77 16 16 N -1.01 -18.62 10.07 32.00 0.32 -18.30 16 17 S 2.74 46.32 4.91 -107.50 -0.53 45.79 16 18 O -0.99 -18.40 16.78 -58.08 -0.97 -19.37 16 19 O -0.99 -18.59 17.04 -58.10 -0.99 -19.58 16 20 N -0.99 -13.20 3.76 -111.43 -0.42 -13.62 16 21 C 0.12 1.29 6.98 -3.07 -0.02 1.27 16 22 C -0.13 -0.93 6.95 -24.90 -0.17 -1.11 16 23 C -0.13 -0.95 7.08 -24.58 -0.17 -1.12 16 24 C 0.12 1.22 7.11 -2.53 -0.02 1.21 16 25 C -0.18 -4.17 6.75 -38.47 -0.26 -4.43 16 26 H 0.29 6.71 8.30 -40.82 -0.34 6.38 16 27 H 0.11 2.08 8.06 -52.49 -0.42 1.66 16 28 H 0.11 1.65 8.06 -52.48 -0.42 1.22 16 29 H 0.12 2.13 7.54 -52.48 -0.40 1.74 16 30 H 0.39 6.55 5.71 52.38 0.30 6.85 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.88 7.78 -51.93 -0.40 0.48 16 39 H 0.12 2.77 4.28 -52.49 -0.22 2.54 16 LS Contribution 337.32 15.07 5.08 5.08 Total: -1.00 -29.52 337.32 -8.77 -38.29 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -4.12 Total: 7.74 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -3.53 Total: -12.52 kcal Atomic # 7 Polarization: -52.34 SS G_CDS: 0.68 Total: -51.66 kcal Atomic # 8 Polarization: -46.54 SS G_CDS: -2.19 Total: -48.73 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.17 Total: 16.01 kcal Atomic # 16 Polarization: 46.32 SS G_CDS: -0.53 Total: 45.79 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.52 -8.77 -38.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052771351.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.449 kcal (2) G-P(sol) polarization free energy of solvation -29.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds