Wall clock time and date at job start Tue Mar 31 2020 14:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86802 * 119.99739 * 2 1 4 4 H 1.48499 * 109.46857 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46955 * 299.99807 * 3 2 1 6 6 H 1.48491 * 109.47231 * 59.99552 * 3 2 1 7 7 C 1.38814 * 120.00054 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99433 * 180.02562 * 7 2 1 9 9 O 1.34836 * 120.00358 * 0.02562 * 7 2 1 10 10 C 1.34822 * 117.00360 * 180.02562 * 9 7 2 11 11 O 1.21601 * 119.99577 * 359.97438 * 10 9 7 12 12 C 1.46886 * 120.00407 * 180.02562 * 10 9 7 13 13 C 1.37909 * 126.37203 * 186.40131 * 12 10 9 14 14 C 1.40432 * 107.61023 * 179.97438 * 13 12 10 15 15 C 1.47862 * 125.75675 * 179.97438 * 14 13 12 16 16 C 1.35908 * 125.93093 * 180.02562 * 15 14 13 17 17 C 1.40977 * 106.74323 * 179.71652 * 16 15 14 18 18 C 1.34708 * 107.02519 * 0.41129 * 17 16 15 19 19 O 1.34339 * 108.66773 * 359.58913 * 18 17 16 20 20 N 1.32003 * 108.49438 * 0.26142 * 14 13 12 21 21 N 1.37121 * 126.36914 * 6.34971 * 12 10 9 22 22 C 1.39925 * 126.03165 * 0.04037 * 21 12 10 23 23 C 1.38908 * 120.07090 * 225.76240 * 22 21 12 24 24 C 1.38107 * 119.91941 * 179.75030 * 23 22 21 25 25 C 1.38290 * 120.07662 * 0.53308 * 24 23 22 26 26 C 1.38292 * 120.14610 * 359.74172 * 25 24 23 27 27 C 1.38097 * 120.07432 * 359.97438 * 26 25 24 28 28 H 0.96996 * 120.00541 * 0.02562 * 1 2 3 29 29 H 1.08000 * 126.19154 * 359.93916 * 13 12 10 30 30 H 1.07995 * 126.63154 * 359.97438 * 16 15 14 31 31 H 1.07998 * 126.48859 * 180.26137 * 17 16 15 32 32 H 1.07997 * 125.67226 * 179.84688 * 18 17 16 33 33 H 1.07994 * 120.03859 * 0.02720 * 23 22 21 34 34 H 1.08004 * 119.95891 * 180.29339 * 24 23 22 35 35 H 1.08000 * 119.92753 * 179.76995 * 25 24 23 36 36 H 1.08001 * 119.96397 * 180.02562 * 26 25 24 37 37 H 1.08008 * 120.03797 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8893 2.3965 1.2124 7 6 2.0082 -1.2022 0.0005 8 1 3.0883 -1.2020 0.0010 9 8 1.3342 -2.3699 0.0005 10 6 2.0685 -3.5006 0.0016 11 8 3.2828 -3.4369 0.0021 12 6 1.4017 -4.8094 0.0011 13 6 2.0136 -6.0390 0.1259 14 6 1.0101 -7.0201 0.0752 15 6 1.2234 -8.4801 0.1711 16 6 0.2551 -9.4325 0.1219 17 6 0.9040 -10.6781 0.2441 18 6 2.2213 -10.4259 0.3697 19 8 2.4112 -9.0969 0.3217 20 7 -0.1553 -6.4195 -0.0788 21 7 0.0550 -5.0359 -0.1225 22 6 -0.9339 -4.0573 -0.2721 23 6 -2.0991 -4.1244 0.4810 24 6 -3.0708 -3.1539 0.3345 25 6 -2.8896 -2.1225 -0.5686 26 6 -1.7332 -2.0559 -1.3240 27 6 -0.7549 -3.0197 -1.1783 28 1 -0.4851 0.8400 -0.0004 29 1 3.0728 -6.2155 0.2411 30 1 -0.8059 -9.2674 0.0069 31 1 0.4338 -11.6503 0.2404 32 1 2.9966 -11.1689 0.4852 33 1 -2.2430 -4.9319 1.1834 34 1 -3.9750 -3.2029 0.9232 35 1 -3.6527 -1.3669 -0.6838 36 1 -1.5945 -1.2488 -2.0281 37 1 0.1482 -2.9670 -1.7683 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054248362.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:41 Heat of formation + Delta-G solvation = 59.795326 kcal Electronic energy + Delta-G solvation = -26448.034200 eV Core-core repulsion = 22546.156690 eV Total energy + Delta-G solvation = -3901.877511 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.53527 -41.10101 -38.83950 -38.36379 -35.36517 -33.63389 -32.93675 -32.30554 -30.72804 -30.32188 -29.67837 -27.88630 -25.85879 -23.79741 -23.00872 -22.12845 -21.61017 -21.37678 -19.80012 -19.35700 -18.25179 -17.85681 -17.19436 -16.11798 -16.03744 -15.61430 -15.29663 -15.02811 -14.55362 -14.45570 -14.37535 -14.06073 -13.56691 -13.21152 -12.96107 -12.89564 -12.83190 -12.72216 -12.39012 -12.14718 -11.69557 -11.40168 -11.15170 -10.87452 -10.72482 -10.57257 -10.52014 -10.14969 -10.03744 -9.84947 -9.39700 -8.80612 -8.71209 -8.43526 -8.28911 -7.68430 -6.59428 -4.23678 0.97282 1.46404 1.98760 2.00036 2.27307 2.40150 3.02937 3.05859 3.10434 3.16147 3.20520 3.69120 3.81812 4.22583 4.27762 4.60437 4.95617 4.97907 5.01090 5.11508 5.38871 5.43093 5.46892 5.62872 5.68740 5.85474 5.88710 5.90604 6.05985 6.09748 6.12127 6.42263 6.48177 6.53484 6.62154 6.79360 6.91809 7.05012 7.08926 7.18787 7.23275 7.57049 7.70114 7.75639 8.45222 8.86104 9.56942 10.53039 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.016137 B = 0.004001 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.706917 B = 6995.921340 C = 8559.392804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.049 3.951 3 Si 0.942 3.058 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.378 4.378 8 H 0.099 0.901 9 O -0.191 6.191 10 C 0.443 3.557 11 O -0.531 6.531 12 C 0.093 3.907 13 C -0.192 4.192 14 C 0.127 3.873 15 C 0.069 3.931 16 C -0.173 4.173 17 C -0.215 4.215 18 C -0.032 4.032 19 O -0.165 6.165 20 N -0.250 5.250 21 N -0.286 5.286 22 C 0.130 3.870 23 C -0.109 4.109 24 C -0.119 4.119 25 C -0.108 4.108 26 C -0.050 4.050 27 C -0.054 4.054 28 H 0.271 0.729 29 H 0.165 0.835 30 H 0.154 0.846 31 H 0.151 0.849 32 H 0.206 0.794 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.125 0.875 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.606 -11.562 -0.933 12.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.158 4.158 3 Si 0.767 3.233 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.454 4.454 8 H 0.117 0.883 9 O -0.097 6.097 10 C 0.289 3.711 11 O -0.427 6.427 12 C -0.032 4.032 13 C -0.221 4.221 14 C -0.033 4.033 15 C 0.018 3.982 16 C -0.195 4.195 17 C -0.234 4.234 18 C -0.101 4.101 19 O -0.059 6.059 20 N -0.077 5.077 21 N -0.067 5.067 22 C 0.040 3.960 23 C -0.129 4.129 24 C -0.138 4.138 25 C -0.126 4.126 26 C -0.069 4.069 27 C -0.074 4.074 28 H 0.081 0.919 29 H 0.182 0.818 30 H 0.172 0.828 31 H 0.169 0.831 32 H 0.223 0.777 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.136 0.864 36 H 0.143 0.857 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.461 -11.257 -1.037 12.554 hybrid contribution 1.293 0.769 0.302 1.535 sum -4.167 -10.488 -0.735 11.309 Atomic orbital electron populations 1.70005 1.05660 1.27728 1.43895 1.25325 0.95945 0.98636 0.95849 0.85607 0.79666 0.79844 0.78185 1.18919 1.20077 1.20127 1.21423 0.92739 0.79504 1.51771 0.88307 1.84092 1.38450 1.13097 1.74017 1.19398 0.85678 0.83906 0.82122 1.90716 1.13876 1.86897 1.51212 1.20892 0.83114 0.94463 1.04720 1.21665 1.00741 0.88331 1.11321 1.18827 0.91610 0.89210 1.03674 1.18708 0.83008 0.89149 1.07382 1.21827 1.00424 0.91138 1.06077 1.21780 0.93827 0.99242 1.08577 1.24140 0.98477 0.81721 1.05797 1.84067 1.31792 1.19529 1.70560 1.77599 1.19992 0.86431 1.23635 1.46053 1.04238 1.03360 1.53008 1.17340 0.89122 0.89386 1.00140 1.20767 0.93192 0.99913 0.99052 1.20792 0.98683 0.94924 0.99380 1.21089 0.97914 0.97479 0.96141 1.20670 0.91802 0.95835 0.98596 1.20836 0.98400 0.92684 0.95509 0.91916 0.81775 0.82808 0.83117 0.77699 0.86136 0.86128 0.86390 0.85704 0.85898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -20.85 12.38 55.49 0.69 -20.16 16 2 C 0.05 1.24 5.50 -17.52 -0.10 1.14 16 3 Si 0.94 19.62 29.55 -169.99 -5.02 14.60 16 4 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.55 7.11 56.52 0.40 -5.14 16 6 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 7 C -0.38 -10.29 9.65 30.95 0.30 -9.99 16 8 H 0.10 2.77 6.86 -52.48 -0.36 2.41 16 9 O -0.19 -5.06 5.62 -21.83 -0.12 -5.19 16 10 C 0.44 11.25 7.44 34.23 0.25 11.50 16 11 O -0.53 -14.40 16.15 -19.35 -0.31 -14.71 16 12 C 0.09 2.07 6.76 -82.12 -0.56 1.51 16 13 C -0.19 -3.80 10.57 -38.88 -0.41 -4.21 16 14 C 0.13 2.34 7.06 -83.03 -0.59 1.76 16 15 C 0.07 1.09 7.18 -36.48 -0.26 0.83 16 16 C -0.17 -2.32 10.81 -39.38 -0.43 -2.75 16 17 C -0.22 -2.28 10.89 -39.80 -0.43 -2.72 16 18 C -0.03 -0.33 12.08 29.48 0.36 0.02 16 19 O -0.16 -2.34 10.67 4.57 0.05 -2.29 16 20 N -0.25 -4.84 12.41 33.27 0.41 -4.43 16 21 N -0.29 -5.99 3.72 -7.14 -0.03 -6.02 16 22 C 0.13 2.64 5.83 -83.67 -0.49 2.16 16 23 C -0.11 -1.97 9.89 -39.38 -0.39 -2.36 16 24 C -0.12 -1.89 10.04 -39.61 -0.40 -2.29 16 25 C -0.11 -1.76 10.04 -39.54 -0.40 -2.15 16 26 C -0.05 -0.93 8.76 -39.61 -0.35 -1.28 16 27 C -0.05 -1.11 7.15 -39.38 -0.28 -1.39 16 28 H 0.27 6.25 8.31 -40.82 -0.34 5.91 16 29 H 0.16 3.02 8.06 -52.49 -0.42 2.59 16 30 H 0.15 1.93 8.06 -52.49 -0.42 1.51 16 31 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.21 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.12 2.02 8.06 -52.49 -0.42 1.60 16 34 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 35 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 36 H 0.13 2.23 8.06 -52.49 -0.42 1.81 16 37 H 0.12 2.73 6.85 -52.48 -0.36 2.37 16 LS Contribution 337.94 15.07 5.09 5.09 Total: -1.00 -30.30 337.94 -6.64 -36.94 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -3.24 Total: 6.39 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -4.16 Total: -10.22 kcal Atomic # 7 Polarization: -31.68 SS G_CDS: 1.07 Total: -30.61 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.39 Total: -22.19 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.30 -6.64 -36.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054248362.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.740 kcal (2) G-P(sol) polarization free energy of solvation -30.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds