Wall clock time and date at job start Tue Mar 31 2020 14:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86802 * 119.99739 * 2 1 4 4 H 1.48499 * 109.46857 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46955 * 299.99807 * 3 2 1 6 6 H 1.48491 * 109.47231 * 59.99552 * 3 2 1 7 7 C 1.38814 * 120.00054 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99433 * 180.02562 * 7 2 1 9 9 O 1.34836 * 120.00358 * 0.02562 * 7 2 1 10 10 C 1.34822 * 117.00360 * 180.02562 * 9 7 2 11 11 O 1.21601 * 119.99577 * 359.97438 * 10 9 7 12 12 C 1.46886 * 120.00407 * 180.02562 * 10 9 7 13 13 C 1.37909 * 126.37203 * 186.40131 * 12 10 9 14 14 C 1.40432 * 107.61023 * 179.97438 * 13 12 10 15 15 C 1.47862 * 125.75675 * 179.97438 * 14 13 12 16 16 C 1.35908 * 125.93093 * 180.02562 * 15 14 13 17 17 C 1.40977 * 106.74323 * 179.71652 * 16 15 14 18 18 C 1.34708 * 107.02519 * 0.41129 * 17 16 15 19 19 O 1.34339 * 108.66773 * 359.58913 * 18 17 16 20 20 N 1.32003 * 108.49438 * 0.26142 * 14 13 12 21 21 N 1.37121 * 126.36914 * 6.34971 * 12 10 9 22 22 C 1.39925 * 126.03165 * 0.04037 * 21 12 10 23 23 C 1.38908 * 120.07090 * 225.76240 * 22 21 12 24 24 C 1.38107 * 119.91941 * 179.75030 * 23 22 21 25 25 C 1.38290 * 120.07662 * 0.53308 * 24 23 22 26 26 C 1.38292 * 120.14610 * 359.74172 * 25 24 23 27 27 C 1.38097 * 120.07432 * 359.97438 * 26 25 24 28 28 H 0.96996 * 120.00541 * 0.02562 * 1 2 3 29 29 H 1.08000 * 126.19154 * 359.93916 * 13 12 10 30 30 H 1.07995 * 126.63154 * 359.97438 * 16 15 14 31 31 H 1.07998 * 126.48859 * 180.26137 * 17 16 15 32 32 H 1.07997 * 125.67226 * 179.84688 * 18 17 16 33 33 H 1.07994 * 120.03859 * 0.02720 * 23 22 21 34 34 H 1.08004 * 119.95891 * 180.29339 * 24 23 22 35 35 H 1.08000 * 119.92753 * 179.76995 * 25 24 23 36 36 H 1.08001 * 119.96397 * 180.02562 * 26 25 24 37 37 H 1.08008 * 120.03797 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8893 2.3965 1.2124 7 6 2.0082 -1.2022 0.0005 8 1 3.0883 -1.2020 0.0010 9 8 1.3342 -2.3699 0.0005 10 6 2.0685 -3.5006 0.0016 11 8 3.2828 -3.4369 0.0021 12 6 1.4017 -4.8094 0.0011 13 6 2.0136 -6.0390 0.1259 14 6 1.0101 -7.0201 0.0752 15 6 1.2234 -8.4801 0.1711 16 6 0.2551 -9.4325 0.1219 17 6 0.9040 -10.6781 0.2441 18 6 2.2213 -10.4259 0.3697 19 8 2.4112 -9.0969 0.3217 20 7 -0.1553 -6.4195 -0.0788 21 7 0.0550 -5.0359 -0.1225 22 6 -0.9339 -4.0573 -0.2721 23 6 -2.0991 -4.1244 0.4810 24 6 -3.0708 -3.1539 0.3345 25 6 -2.8896 -2.1225 -0.5686 26 6 -1.7332 -2.0559 -1.3240 27 6 -0.7549 -3.0197 -1.1783 28 1 -0.4851 0.8400 -0.0004 29 1 3.0728 -6.2155 0.2411 30 1 -0.8059 -9.2674 0.0069 31 1 0.4338 -11.6503 0.2404 32 1 2.9966 -11.1689 0.4852 33 1 -2.2430 -4.9319 1.1834 34 1 -3.9750 -3.2029 0.9232 35 1 -3.6527 -1.3669 -0.6838 36 1 -1.5945 -1.2488 -2.0281 37 1 0.1482 -2.9670 -1.7683 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054248362.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:41 Heat of formation + Delta-G solvation = 43.659767 kcal Electronic energy + Delta-G solvation = -26448.733891 eV Core-core repulsion = 22546.156690 eV Total energy + Delta-G solvation = -3902.577201 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.55240 -42.65609 -40.79267 -39.78876 -37.38068 -35.05234 -34.27765 -33.94395 -32.23855 -31.68722 -31.04598 -29.18293 -27.80446 -25.38534 -24.46042 -23.62174 -22.74747 -22.60324 -21.08684 -20.98507 -19.97777 -19.73820 -18.34675 -17.65909 -17.37288 -17.15209 -16.82900 -16.59043 -16.25172 -16.17818 -15.77931 -15.56426 -15.02209 -14.74677 -14.60051 -14.30837 -13.86670 -13.81188 -13.68892 -13.48517 -13.37704 -13.23879 -12.56049 -12.50412 -12.33345 -12.19223 -12.10356 -12.02166 -11.52436 -11.38937 -10.85927 -10.67892 -10.37848 -9.73627 -9.64641 -9.01339 -8.51681 -6.29413 -0.54570 0.17857 0.48517 0.57634 0.84845 1.35672 1.36840 1.44350 1.50803 1.81558 1.87967 2.00481 2.05002 2.45483 2.88061 2.99321 3.40434 3.64036 3.82703 4.02097 4.03493 4.07391 4.16145 4.30777 4.37523 4.54643 4.56672 4.65946 4.68843 4.83842 4.99345 5.05269 5.12243 5.13155 5.14918 5.38167 5.50055 5.55569 5.65700 5.73626 5.75406 5.99158 6.15450 6.26429 6.43857 6.86570 7.56105 8.60814 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.016137 B = 0.004001 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.706917 B = 6995.921340 C = 8559.392804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.020 3.980 3 Si 1.010 2.990 4 H -0.275 1.275 5 H -0.258 1.258 6 H -0.262 1.262 7 C -0.427 4.427 8 H 0.078 0.922 9 O -0.194 6.194 10 C 0.438 3.562 11 O -0.562 6.562 12 C 0.062 3.938 13 C -0.187 4.187 14 C 0.139 3.861 15 C 0.020 3.980 16 C -0.158 4.158 17 C -0.221 4.221 18 C -0.010 4.010 19 O -0.183 6.183 20 N -0.251 5.251 21 N -0.290 5.290 22 C 0.104 3.896 23 C -0.116 4.116 24 C -0.107 4.107 25 C -0.101 4.101 26 C -0.061 4.061 27 C -0.075 4.075 28 H 0.282 0.718 29 H 0.172 0.828 30 H 0.158 0.842 31 H 0.186 0.814 32 H 0.254 0.746 33 H 0.131 0.869 34 H 0.164 0.836 35 H 0.154 0.846 36 H 0.124 0.876 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.362 -12.794 -0.185 14.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.186 4.186 3 Si 0.830 3.170 4 H -0.199 1.199 5 H -0.182 1.182 6 H -0.187 1.187 7 C -0.502 4.502 8 H 0.095 0.905 9 O -0.100 6.100 10 C 0.286 3.714 11 O -0.460 6.460 12 C -0.063 4.063 13 C -0.216 4.216 14 C -0.022 4.022 15 C -0.032 4.032 16 C -0.180 4.180 17 C -0.239 4.239 18 C -0.079 4.079 19 O -0.078 6.078 20 N -0.077 5.077 21 N -0.071 5.071 22 C 0.014 3.986 23 C -0.136 4.136 24 C -0.125 4.125 25 C -0.119 4.119 26 C -0.079 4.079 27 C -0.096 4.096 28 H 0.092 0.908 29 H 0.190 0.810 30 H 0.176 0.824 31 H 0.203 0.797 32 H 0.270 0.730 33 H 0.149 0.851 34 H 0.181 0.819 35 H 0.172 0.828 36 H 0.142 0.858 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.268 -12.486 -0.296 14.451 hybrid contribution 1.782 0.929 0.069 2.011 sum -5.486 -11.557 -0.226 12.795 Atomic orbital electron populations 1.70050 1.06437 1.29273 1.42138 1.26234 0.97073 1.00909 0.94414 0.84673 0.77696 0.75462 0.79198 1.19949 1.18201 1.18705 1.21529 0.92319 0.80750 1.55646 0.90451 1.84128 1.38448 1.13264 1.74134 1.19916 0.85631 0.84790 0.81075 1.90658 1.15045 1.87540 1.52754 1.20674 0.84418 0.93584 1.07581 1.21874 1.01490 0.87985 1.10292 1.19180 0.90507 0.90748 1.01763 1.18512 0.84465 0.87991 1.12189 1.22134 1.00416 0.92019 1.03422 1.22178 0.93813 0.99494 1.08462 1.25225 0.99916 0.80694 1.02023 1.84063 1.31418 1.21356 1.70988 1.77550 1.20450 0.85688 1.24008 1.46146 1.03693 1.04008 1.53253 1.17662 0.90066 0.89671 1.01169 1.21044 0.92779 1.00967 0.98812 1.21277 0.99217 0.93336 0.98681 1.21486 0.97453 0.98133 0.94868 1.20787 0.92488 0.95338 0.99329 1.20686 0.98140 0.94308 0.96438 0.90794 0.81022 0.82384 0.79674 0.73037 0.85088 0.81879 0.82823 0.85822 0.89183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -42.27 12.38 21.64 0.27 -42.00 16 2 C 0.02 1.02 5.50 84.89 0.47 1.49 16 3 Si 1.01 40.41 29.55 68.60 2.03 42.44 16 4 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 6 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 7 C -0.43 -24.61 9.65 67.96 0.66 -23.95 16 8 H 0.08 4.67 6.86 -2.91 -0.02 4.65 16 9 O -0.19 -11.04 5.62 10.61 0.06 -10.98 16 10 C 0.44 24.04 7.44 70.09 0.52 24.56 16 11 O -0.56 -32.85 16.15 19.51 0.32 -32.54 16 12 C 0.06 2.96 6.76 40.50 0.27 3.23 16 13 C -0.19 -7.83 10.57 22.73 0.24 -7.59 16 14 C 0.14 5.25 7.06 42.20 0.30 5.54 16 15 C 0.02 0.60 7.18 24.28 0.17 0.78 16 16 C -0.16 -3.96 10.81 22.40 0.24 -3.72 16 17 C -0.22 -3.88 10.89 22.13 0.24 -3.64 16 18 C -0.01 -0.18 12.08 67.01 0.81 0.63 16 19 O -0.18 -4.92 10.67 -6.55 -0.07 -4.99 16 20 N -0.25 -9.99 12.41 -48.65 -0.60 -10.59 16 21 N -0.29 -12.82 3.72 -176.52 -0.66 -13.47 16 22 C 0.10 4.40 5.83 38.17 0.22 4.62 16 23 C -0.12 -4.13 9.89 22.40 0.22 -3.91 16 24 C -0.11 -3.14 10.04 22.25 0.22 -2.92 16 25 C -0.10 -3.11 10.04 22.29 0.22 -2.88 16 26 C -0.06 -2.28 8.76 22.25 0.19 -2.09 16 27 C -0.08 -3.28 7.15 22.40 0.16 -3.12 16 28 H 0.28 12.73 8.31 -92.71 -0.77 11.95 16 29 H 0.17 6.69 8.06 -2.91 -0.02 6.67 16 30 H 0.16 3.72 8.06 -2.91 -0.02 3.70 16 31 H 0.19 1.92 8.06 -2.91 -0.02 1.89 16 32 H 0.25 1.57 8.06 -2.91 -0.02 1.54 16 33 H 0.13 4.29 8.06 -2.91 -0.02 4.27 16 34 H 0.16 3.40 8.06 -2.91 -0.02 3.38 16 35 H 0.15 3.60 8.06 -2.91 -0.02 3.57 16 36 H 0.12 4.55 8.06 -2.91 -0.02 4.52 16 37 H 0.09 4.42 6.85 -2.91 -0.02 4.40 16 Total: -1.00 -70.91 337.94 7.63 -63.28 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: 1.12 Total: 21.82 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: 5.17 Total: -12.97 kcal Atomic # 7 Polarization: -65.07 SS G_CDS: -0.99 Total: -66.06 kcal Atomic # 8 Polarization: -48.81 SS G_CDS: 0.30 Total: -48.51 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 2.03 Total: 42.44 kcal Total: -70.91 7.63 -63.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054248362.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.939 kcal (2) G-P(sol) polarization free energy of solvation -70.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds