Wall clock time and date at job start Tue Mar 31 2020 14:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99995 * 2 1 4 4 H 1.48501 * 109.46866 * 270.00038 * 3 2 1 5 5 H 1.48501 * 109.47078 * 29.99799 * 3 2 1 6 6 H 1.48500 * 109.47056 * 149.99992 * 3 2 1 7 7 C 1.37880 * 120.00273 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00112 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99854 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47313 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47262 * 179.97438 * 10 9 7 12 12 O 1.45197 * 109.47415 * 180.02562 * 11 10 9 13 13 C 1.34230 * 117.00518 * 180.02562 * 12 11 10 14 14 O 1.20827 * 119.99565 * 359.97438 * 13 12 11 15 15 C 1.50696 * 120.00181 * 179.97438 * 13 12 11 16 16 C 1.52997 * 109.47055 * 179.97438 * 15 13 12 17 17 C 1.50706 * 109.47238 * 179.97438 * 16 15 13 18 18 O 1.21267 * 119.99837 * 0.02562 * 17 16 15 19 19 C 1.47084 * 119.99940 * 179.97438 * 17 16 15 20 20 C 1.39896 * 120.16015 * 359.72942 * 19 17 16 21 21 C 1.37816 * 119.83652 * 179.80805 * 20 19 17 22 22 C 1.38561 * 120.15980 * 0.44280 * 21 20 19 23 23 Cl 1.73600 * 119.83963 * 179.76325 * 22 21 20 24 24 C 1.38569 * 120.32356 * 359.78762 * 22 21 20 25 25 C 1.37816 * 120.15317 * 359.97438 * 24 22 21 26 26 H 0.96991 * 120.00363 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.47034 * 59.99935 * 9 7 2 28 28 H 1.09003 * 109.47248 * 299.99812 * 9 7 2 29 29 H 1.09003 * 109.46841 * 60.00163 * 10 9 7 30 30 H 1.09003 * 109.47093 * 300.00254 * 10 9 7 31 31 H 1.09003 * 109.47398 * 60.00067 * 11 10 9 32 32 H 1.09003 * 109.47381 * 300.00209 * 11 10 9 33 33 H 1.09001 * 109.47328 * 59.99716 * 15 13 12 34 34 H 1.09004 * 109.47043 * 299.99526 * 15 13 12 35 35 H 1.09001 * 109.46832 * 59.99966 * 16 15 13 36 36 H 1.09000 * 109.47611 * 300.00263 * 16 15 13 37 37 H 1.08002 * 120.08130 * 0.02562 * 20 19 17 38 38 H 1.08005 * 119.91742 * 180.18977 * 21 20 19 39 39 H 1.07998 * 119.92109 * 179.97438 * 24 22 21 40 40 H 1.07999 * 120.07234 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 8 2.4239 -6.0907 0.0018 13 6 1.9109 -7.3311 0.0019 14 8 0.7131 -7.4894 0.0019 15 6 2.8289 -8.5262 0.0019 16 6 1.9957 -9.8094 0.0026 17 6 2.9137 -11.0046 0.0020 18 8 4.1159 -10.8456 0.0016 19 6 2.3515 -12.3637 0.0032 20 6 0.9651 -12.5508 0.0105 21 6 0.4455 -13.8273 0.0075 22 6 1.2927 -14.9238 0.0065 23 17 0.6292 -16.5280 0.0089 24 6 2.6669 -14.7461 0.0041 25 6 3.2007 -13.4755 0.0021 26 1 -0.4850 0.8399 -0.0004 27 1 0.6248 -2.5571 -0.8897 28 1 0.6241 -2.5568 0.8903 29 1 2.8720 -3.6044 0.8906 30 1 2.8721 -3.6044 -0.8895 31 1 0.8534 -5.0452 -0.8886 32 1 0.8540 -5.0446 0.8914 33 1 3.4578 -8.5013 0.8918 34 1 3.4577 -8.5014 -0.8882 35 1 1.3665 -9.8345 -0.8871 36 1 1.3671 -9.8340 0.8928 37 1 0.3036 -11.6971 0.0149 38 1 -0.6246 -13.9733 0.0100 39 1 3.3212 -15.6053 0.0037 40 1 4.2719 -13.3385 0.0006 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057878538.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:30 Heat of formation + Delta-G solvation = -130.412860 kcal Electronic energy + Delta-G solvation = -22672.390475 eV Core-core repulsion = 18863.372412 eV Total energy + Delta-G solvation = -3809.018063 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.096 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.79549 -40.16100 -38.88515 -37.01172 -36.61106 -34.01098 -33.54053 -31.86838 -31.66301 -31.54602 -27.64299 -26.41134 -24.10571 -23.38720 -22.87858 -20.81366 -20.34698 -19.96319 -18.25404 -17.51381 -16.78207 -16.76354 -16.36558 -16.17735 -15.70767 -15.68327 -14.93740 -14.55654 -14.46671 -14.42182 -14.22273 -13.95101 -13.26720 -13.10410 -12.85781 -12.42025 -12.19460 -12.12771 -12.10582 -12.01844 -11.81655 -11.57923 -11.43007 -10.97994 -10.68753 -10.65004 -10.41405 -10.40223 -10.25463 -9.74523 -9.73859 -9.51643 -9.38831 -9.17494 -8.39716 -6.04548 -4.07600 -0.08248 0.64668 1.46359 1.78221 2.28041 2.73472 3.06884 3.30581 3.36782 3.40350 3.55178 4.06758 4.20838 4.28382 4.42888 4.57735 4.59632 4.67902 4.81493 4.94234 4.97139 5.23102 5.29157 5.31507 5.41072 5.48227 5.53538 5.55968 5.56099 5.60776 5.68569 5.99230 6.04165 6.47905 6.52516 6.82126 6.96789 6.99336 7.58878 7.69718 7.86944 7.93772 8.34919 8.98656 9.56826 11.06869 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.045673 B = 0.001470 C = 0.001427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.905755 B =19038.791573 C =19615.341682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.024 3.976 10 C -0.110 4.110 11 C 0.068 3.932 12 O -0.357 6.357 13 C 0.458 3.542 14 O -0.516 6.516 15 C -0.107 4.107 16 C -0.156 4.156 17 C 0.400 3.600 18 O -0.445 6.445 19 C -0.165 4.165 20 C -0.058 4.058 21 C -0.123 4.123 22 C -0.007 4.007 23 Cl -0.062 7.062 24 C -0.124 4.124 25 C -0.048 4.048 26 H 0.261 0.739 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.147 0.853 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.999 -33.740 0.021 33.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.076 0.924 9 C -0.013 4.013 10 C -0.148 4.148 11 C -0.005 4.005 12 O -0.273 6.273 13 C 0.302 3.698 14 O -0.406 6.406 15 C -0.145 4.145 16 C -0.194 4.194 17 C 0.277 3.723 18 O -0.319 6.319 19 C -0.166 4.166 20 C -0.076 4.076 21 C -0.142 4.142 22 C -0.034 4.034 23 Cl -0.033 7.033 24 C -0.143 4.143 25 C -0.067 4.067 26 H 0.071 0.929 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.165 0.835 38 H 0.160 0.840 39 H 0.158 0.842 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.059 -33.670 0.027 33.809 hybrid contribution 0.010 0.756 -0.012 0.756 sum 3.069 -32.914 0.015 33.057 Atomic orbital electron populations 1.69959 1.06089 1.26770 1.50535 1.25026 0.94875 0.99362 0.95165 0.86543 0.79819 0.83208 0.78144 1.20610 1.21187 1.19802 1.21179 0.93151 0.90689 1.51034 0.92407 1.19057 0.93841 0.90767 0.97675 1.21773 0.99948 0.91006 1.02025 1.23518 0.91186 0.83620 1.02154 1.86504 1.42703 1.15190 1.82881 1.23489 0.88474 0.85282 0.72597 1.90655 1.17020 1.87008 1.45880 1.21119 0.97601 0.88604 1.07154 1.21865 0.99122 0.91711 1.06660 1.22370 0.89348 0.89290 0.71268 1.90567 1.17319 1.88400 1.35656 1.20613 0.94417 0.95160 1.06417 1.21548 0.94158 0.97421 0.94488 1.21102 1.00576 0.90965 1.01536 1.21325 0.93806 0.86630 1.01600 1.98403 1.85873 1.22526 1.96527 1.21081 0.93109 0.98286 1.01823 1.21423 1.00900 0.90646 0.93708 0.92894 0.96239 0.96220 0.92115 0.92109 0.91473 0.91478 0.87054 0.87048 0.86979 0.86973 0.83531 0.84021 0.84176 0.83762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.70 13.29 55.43 0.74 -25.97 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.52 -14.69 9.11 -34.44 -0.31 -15.01 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.11 -2.27 5.53 -26.73 -0.15 -2.42 16 11 C 0.07 1.23 5.47 37.15 0.20 1.44 16 12 O -0.36 -5.77 10.22 -39.26 -0.40 -6.17 16 13 C 0.46 6.33 7.96 36.00 0.29 6.62 16 14 O -0.52 -8.23 15.73 -18.75 -0.29 -8.52 16 15 C -0.11 -1.02 5.10 -27.89 -0.14 -1.17 16 16 C -0.16 -1.17 3.60 -27.88 -0.10 -1.27 16 17 C 0.40 3.19 7.11 -30.72 -0.22 2.97 16 18 O -0.44 -4.72 15.97 5.57 0.09 -4.63 16 19 C -0.16 -1.14 5.87 -105.07 -0.62 -1.75 16 20 C -0.06 -0.32 9.47 -39.12 -0.37 -0.69 16 21 C -0.12 -0.68 9.81 -39.62 -0.39 -1.07 16 22 C -0.01 -0.04 6.33 -39.34 -0.25 -0.29 16 23 Cl -0.06 -0.38 28.95 -51.86 -1.50 -1.88 16 24 C -0.12 -0.72 9.81 -39.61 -0.39 -1.11 16 25 C -0.05 -0.32 9.60 -39.11 -0.38 -0.69 16 26 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.07 1.22 8.13 -51.93 -0.42 0.79 16 32 H 0.07 1.21 8.13 -51.93 -0.42 0.79 16 33 H 0.11 0.98 8.10 -51.93 -0.42 0.56 16 34 H 0.11 0.99 8.10 -51.93 -0.42 0.56 16 35 H 0.11 0.75 8.05 -51.93 -0.42 0.33 16 36 H 0.11 0.75 8.04 -51.93 -0.42 0.33 16 37 H 0.15 0.55 7.05 -52.49 -0.37 0.18 16 38 H 0.14 0.55 8.06 -52.48 -0.42 0.13 16 39 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 40 H 0.14 0.87 7.65 -52.49 -0.40 0.47 16 LS Contribution 368.19 15.07 5.55 5.55 Total: -1.00 -32.64 368.19 -9.27 -41.91 By element: Atomic # 1 Polarization: 1.03 SS G_CDS: -5.37 Total: -4.34 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -3.06 Total: -12.44 kcal Atomic # 7 Polarization: -26.70 SS G_CDS: 0.74 Total: -25.97 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -0.61 Total: -19.32 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -1.50 Total: -1.88 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.64 -9.27 -41.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057878538.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.502 kcal (2) G-P(sol) polarization free energy of solvation -32.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds