Wall clock time and date at job start Tue Mar 31 2020 14:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99995 * 2 1 4 4 H 1.48501 * 109.46866 * 270.00038 * 3 2 1 5 5 H 1.48501 * 109.47078 * 29.99799 * 3 2 1 6 6 H 1.48500 * 109.47056 * 149.99992 * 3 2 1 7 7 C 1.37880 * 120.00273 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00112 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99854 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47313 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47262 * 179.97438 * 10 9 7 12 12 O 1.45197 * 109.47415 * 180.02562 * 11 10 9 13 13 C 1.34230 * 117.00518 * 180.02562 * 12 11 10 14 14 O 1.20827 * 119.99565 * 359.97438 * 13 12 11 15 15 C 1.50696 * 120.00181 * 179.97438 * 13 12 11 16 16 C 1.52997 * 109.47055 * 179.97438 * 15 13 12 17 17 C 1.50706 * 109.47238 * 179.97438 * 16 15 13 18 18 O 1.21267 * 119.99837 * 0.02562 * 17 16 15 19 19 C 1.47084 * 119.99940 * 179.97438 * 17 16 15 20 20 C 1.39896 * 120.16015 * 359.72942 * 19 17 16 21 21 C 1.37816 * 119.83652 * 179.80805 * 20 19 17 22 22 C 1.38561 * 120.15980 * 0.44280 * 21 20 19 23 23 Cl 1.73600 * 119.83963 * 179.76325 * 22 21 20 24 24 C 1.38569 * 120.32356 * 359.78762 * 22 21 20 25 25 C 1.37816 * 120.15317 * 359.97438 * 24 22 21 26 26 H 0.96991 * 120.00363 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.47034 * 59.99935 * 9 7 2 28 28 H 1.09003 * 109.47248 * 299.99812 * 9 7 2 29 29 H 1.09003 * 109.46841 * 60.00163 * 10 9 7 30 30 H 1.09003 * 109.47093 * 300.00254 * 10 9 7 31 31 H 1.09003 * 109.47398 * 60.00067 * 11 10 9 32 32 H 1.09003 * 109.47381 * 300.00209 * 11 10 9 33 33 H 1.09001 * 109.47328 * 59.99716 * 15 13 12 34 34 H 1.09004 * 109.47043 * 299.99526 * 15 13 12 35 35 H 1.09001 * 109.46832 * 59.99966 * 16 15 13 36 36 H 1.09000 * 109.47611 * 300.00263 * 16 15 13 37 37 H 1.08002 * 120.08130 * 0.02562 * 20 19 17 38 38 H 1.08005 * 119.91742 * 180.18977 * 21 20 19 39 39 H 1.07998 * 119.92109 * 179.97438 * 24 22 21 40 40 H 1.07999 * 120.07234 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 8 2.4239 -6.0907 0.0018 13 6 1.9109 -7.3311 0.0019 14 8 0.7131 -7.4894 0.0019 15 6 2.8289 -8.5262 0.0019 16 6 1.9957 -9.8094 0.0026 17 6 2.9137 -11.0046 0.0020 18 8 4.1159 -10.8456 0.0016 19 6 2.3515 -12.3637 0.0032 20 6 0.9651 -12.5508 0.0105 21 6 0.4455 -13.8273 0.0075 22 6 1.2927 -14.9238 0.0065 23 17 0.6292 -16.5280 0.0089 24 6 2.6669 -14.7461 0.0041 25 6 3.2007 -13.4755 0.0021 26 1 -0.4850 0.8399 -0.0004 27 1 0.6248 -2.5571 -0.8897 28 1 0.6241 -2.5568 0.8903 29 1 2.8720 -3.6044 0.8906 30 1 2.8721 -3.6044 -0.8895 31 1 0.8534 -5.0452 -0.8886 32 1 0.8540 -5.0446 0.8914 33 1 3.4578 -8.5013 0.8918 34 1 3.4577 -8.5014 -0.8882 35 1 1.3665 -9.8345 -0.8871 36 1 1.3671 -9.8340 0.8928 37 1 0.3036 -11.6971 0.0149 38 1 -0.6246 -13.9733 0.0100 39 1 3.3212 -15.6053 0.0037 40 1 4.2719 -13.3385 0.0006 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057878538.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:29 Heat of formation + Delta-G solvation = -146.250011 kcal Electronic energy + Delta-G solvation = -22673.077225 eV Core-core repulsion = 18863.372412 eV Total energy + Delta-G solvation = -3809.704813 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.096 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.66126 -41.04787 -39.44842 -37.90692 -37.47167 -35.92653 -34.32520 -33.63653 -32.25209 -32.09633 -29.20866 -27.51474 -25.27054 -24.36865 -23.62217 -22.15905 -21.76955 -20.65030 -19.02195 -18.63382 -18.25323 -17.90438 -17.40148 -16.83239 -16.59932 -16.58872 -16.48705 -15.63936 -15.49650 -15.19639 -14.66171 -14.62305 -14.54012 -14.20559 -13.98639 -13.77107 -13.58788 -13.34074 -13.01720 -12.82084 -12.56786 -12.51356 -12.50603 -12.34491 -12.27026 -12.05662 -11.87107 -11.79041 -11.40514 -11.39139 -11.21861 -10.88592 -10.56844 -10.17082 -9.86572 -8.21570 -6.33001 -0.58778 0.22101 1.01112 1.16512 1.22846 1.41936 1.43223 1.54209 1.63287 2.41689 2.60116 2.89131 3.12378 3.47914 3.69588 3.81859 3.86354 3.99993 4.05466 4.07294 4.10438 4.17058 4.32944 4.43208 4.55313 4.56161 4.75353 4.81096 4.87175 4.89894 4.92387 5.04620 5.08658 5.10558 5.22532 5.44236 5.55005 5.61299 5.64475 5.80560 6.19790 6.39179 6.69558 6.82951 7.36572 8.90478 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.045673 B = 0.001470 C = 0.001427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.905755 B =19038.791573 C =19615.341682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.025 3.975 10 C -0.096 4.096 11 C 0.078 3.922 12 O -0.361 6.361 13 C 0.459 3.541 14 O -0.537 6.537 15 C -0.099 4.099 16 C -0.153 4.153 17 C 0.410 3.590 18 O -0.476 6.476 19 C -0.178 4.178 20 C -0.053 4.053 21 C -0.127 4.127 22 C -0.014 4.014 23 Cl -0.063 7.063 24 C -0.127 4.127 25 C -0.056 4.056 26 H 0.264 0.736 27 H -0.002 1.002 28 H -0.002 1.002 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.165 0.835 38 H 0.158 0.842 39 H 0.154 0.846 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.698 -34.421 0.018 34.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.082 0.918 9 C -0.012 4.012 10 C -0.134 4.134 11 C 0.005 3.995 12 O -0.278 6.278 13 C 0.304 3.696 14 O -0.427 6.427 15 C -0.137 4.137 16 C -0.190 4.190 17 C 0.290 3.710 18 O -0.353 6.353 19 C -0.179 4.179 20 C -0.071 4.071 21 C -0.145 4.145 22 C -0.040 4.040 23 Cl -0.034 7.034 24 C -0.145 4.145 25 C -0.074 4.074 26 H 0.073 0.927 27 H 0.016 0.984 28 H 0.016 0.984 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.183 0.817 38 H 0.176 0.824 39 H 0.171 0.829 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.763 -34.379 0.023 34.584 hybrid contribution -0.254 0.862 -0.011 0.899 sum 3.508 -33.516 0.012 33.699 Atomic orbital electron populations 1.70089 1.07820 1.27912 1.51404 1.25984 0.95780 1.03425 0.94561 0.85403 0.78648 0.78215 0.78521 1.19742 1.20770 1.18655 1.21639 0.93746 0.91979 1.50958 0.91780 1.18941 0.94272 0.92431 0.95536 1.21469 0.98770 0.90683 1.02460 1.23117 0.90877 0.83599 1.01949 1.86492 1.42180 1.15765 1.83363 1.24296 0.88860 0.85106 0.71376 1.90649 1.18204 1.87024 1.46856 1.21215 0.97132 0.87233 1.08091 1.21893 0.98941 0.90362 1.07819 1.22448 0.88792 0.89791 0.69982 1.90564 1.18486 1.88754 1.37516 1.20607 0.95128 0.94580 1.07602 1.21747 0.93767 0.98115 0.93519 1.21341 1.01434 0.90739 1.00997 1.21490 0.94105 0.86825 1.01625 1.98404 1.85857 1.22641 1.96523 1.21232 0.93349 0.98501 1.01466 1.21512 1.01050 0.90962 0.93925 0.92683 0.98391 0.98374 0.91621 0.91593 0.91731 0.91740 0.86042 0.86037 0.85833 0.85816 0.81710 0.82439 0.82852 0.83775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.36 13.29 21.45 0.28 -56.08 16 2 C 0.00 0.03 5.46 84.66 0.46 0.49 16 3 Si 0.97 43.85 29.54 68.60 2.03 45.88 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 6 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.55 -30.81 9.11 25.60 0.23 -30.58 16 8 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 9 C 0.03 1.33 4.97 29.85 0.15 1.48 16 10 C -0.10 -3.96 5.53 30.59 0.17 -3.79 16 11 C 0.08 2.81 5.47 71.98 0.39 3.20 16 12 O -0.36 -11.30 10.22 -51.41 -0.53 -11.82 16 13 C 0.46 12.04 7.96 71.23 0.57 12.60 16 14 O -0.54 -16.47 15.73 21.96 0.35 -16.13 16 15 C -0.10 -1.72 5.10 29.85 0.15 -1.57 16 16 C -0.15 -1.99 3.60 29.85 0.11 -1.88 16 17 C 0.41 5.97 7.11 28.01 0.20 6.17 16 18 O -0.48 -9.67 15.97 -2.99 -0.05 -9.71 16 19 C -0.18 -2.21 5.87 -20.15 -0.12 -2.33 16 20 C -0.05 -0.49 9.47 22.57 0.21 -0.27 16 21 C -0.13 -1.16 9.81 22.25 0.22 -0.94 16 22 C -0.01 -0.15 6.33 22.43 0.14 -0.01 16 23 Cl -0.06 -0.69 28.95 -2.72 -0.08 -0.77 16 24 C -0.13 -1.33 9.81 22.25 0.22 -1.11 16 25 C -0.06 -0.68 9.60 22.57 0.22 -0.47 16 26 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 27 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 28 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 29 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 30 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 31 H 0.06 2.34 8.13 -2.39 -0.02 2.32 16 32 H 0.06 2.34 8.13 -2.39 -0.02 2.32 16 33 H 0.12 1.91 8.10 -2.39 -0.02 1.90 16 34 H 0.12 1.92 8.10 -2.38 -0.02 1.90 16 35 H 0.12 1.36 8.05 -2.39 -0.02 1.34 16 36 H 0.12 1.36 8.04 -2.39 -0.02 1.34 16 37 H 0.17 0.82 7.05 -2.91 -0.02 0.80 16 38 H 0.16 0.89 8.06 -2.91 -0.02 0.86 16 39 H 0.15 1.09 8.06 -2.91 -0.02 1.06 16 40 H 0.14 1.69 7.65 -2.91 -0.02 1.67 16 Total: -1.00 -69.55 368.19 6.37 -63.17 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: 1.04 Total: 4.45 kcal Atomic # 6 Polarization: -22.32 SS G_CDS: 3.32 Total: -19.00 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: 0.28 Total: -56.08 kcal Atomic # 8 Polarization: -37.43 SS G_CDS: -0.23 Total: -37.66 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -0.08 Total: -0.77 kcal Total: -69.55 6.37 -63.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057878538.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.075 kcal (2) G-P(sol) polarization free energy of solvation -69.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds