Wall clock time and date at job start Tue Mar 31 2020 14:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13609 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46491 * 109.47404 * 68.00137 * 3 2 1 5 5 C 1.36720 * 120.00056 * 270.61708 * 4 3 2 6 6 H 1.07996 * 120.00497 * 145.33343 * 5 4 3 7 7 C 1.39129 * 119.99640 * 325.33707 * 5 4 3 8 8 N 1.31317 * 119.99693 * 153.72708 * 7 5 4 9 9 Si 1.86797 * 119.99884 * 333.72727 * 7 5 4 10 10 H 1.48508 * 109.47261 * 94.99816 * 9 7 5 11 11 H 1.48503 * 109.47103 * 214.99776 * 9 7 5 12 12 H 1.48498 * 109.47472 * 334.99664 * 9 7 5 13 13 C 1.34778 * 120.00532 * 90.61361 * 4 3 2 14 14 O 1.21759 * 120.00274 * 179.97438 * 13 4 3 15 15 C 1.46228 * 119.99568 * 0.02562 * 13 4 3 16 16 C 1.34977 * 119.99947 * 179.97438 * 15 13 4 17 17 C 1.47147 * 120.00382 * 180.02562 * 16 15 13 18 18 C 1.39899 * 120.16970 * 0.02562 * 17 16 15 19 19 C 1.37852 * 119.82066 * 179.97438 * 18 17 16 20 20 C 1.38431 * 120.17561 * 0.02562 * 19 18 17 21 21 C 1.38395 * 120.35132 * 359.71842 * 20 19 18 22 22 C 1.50702 * 119.91041 * 180.28253 * 21 20 19 23 23 F 1.39907 * 109.47090 * 270.27515 * 22 21 20 24 24 F 1.39894 * 109.47498 * 30.27634 * 22 21 20 25 25 F 1.39897 * 109.47023 * 150.28175 * 22 21 20 26 26 C 1.37900 * 120.17406 * 0.56182 * 21 20 19 27 27 H 1.08996 * 109.47432 * 307.99497 * 3 2 1 28 28 H 1.09001 * 109.46831 * 187.99932 * 3 2 1 29 29 H 0.97005 * 119.99996 * 180.02562 * 8 7 5 30 30 H 1.08002 * 120.00173 * 359.97438 * 15 13 4 31 31 H 1.08004 * 119.99809 * 359.97438 * 16 15 13 32 32 H 1.08000 * 120.08641 * 359.97438 * 18 17 16 33 33 H 1.08001 * 119.91021 * 180.02562 * 19 18 17 34 34 H 1.08002 * 119.82413 * 179.97438 * 20 19 18 35 35 H 1.07998 * 120.08746 * 179.71440 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0967 -0.5165 -1.2806 5 6 3.3131 -1.8571 -1.4386 6 1 3.1231 -2.3261 -2.3927 7 6 3.7782 -2.6173 -0.3702 8 7 3.5129 -3.9022 -0.3139 9 14 4.7799 -1.8102 0.9842 10 1 3.8823 -1.4308 2.1048 11 1 5.8080 -2.7632 1.4744 12 1 5.4459 -0.5951 0.4503 13 6 3.3328 0.3293 -2.3030 14 8 3.7393 -0.1005 -3.3672 15 6 3.1017 1.7633 -2.1339 16 6 3.3386 2.6104 -3.1577 17 6 3.1067 4.0534 -2.9874 18 6 2.6411 4.5514 -1.7657 19 6 2.4268 5.9047 -1.6140 20 6 2.6705 6.7701 -2.6666 21 6 3.1362 6.2859 -3.8765 22 6 3.4042 7.2378 -5.0138 23 9 2.2433 7.3874 -5.7801 24 9 3.7877 8.4814 -4.5006 25 9 4.4302 6.7280 -5.8165 26 6 3.3500 4.9342 -4.0461 27 1 2.9717 -0.6318 0.8098 28 1 2.9709 1.0185 0.1430 29 1 3.8368 -4.4322 0.4312 30 1 2.7415 2.1446 -1.1898 31 1 3.6992 2.2291 -4.1016 32 1 2.4502 3.8773 -0.9438 33 1 2.0678 6.2907 -0.6714 34 1 2.5002 7.8293 -2.5415 35 1 3.7091 4.5574 -4.9924 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060859722.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:49 Heat of formation + Delta-G solvation = -110.030588 kcal Electronic energy + Delta-G solvation = -25742.552886 eV Core-core repulsion = 21291.454431 eV Total energy + Delta-G solvation = -4451.098455 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.19413 -48.71066 -48.66308 -40.95899 -40.28467 -37.93355 -36.52884 -35.27683 -34.20958 -32.78603 -31.08185 -29.42512 -27.51606 -27.05887 -24.73312 -23.37811 -22.09662 -20.45786 -20.07412 -19.52481 -19.39360 -19.01549 -18.42308 -18.07440 -17.38515 -17.18268 -16.29647 -15.75277 -15.67581 -15.57886 -15.47624 -15.28448 -15.14786 -15.10976 -14.89925 -14.82108 -14.61432 -14.48729 -14.21410 -14.13454 -13.95322 -13.82541 -13.60121 -13.28119 -12.94638 -12.69072 -12.41583 -12.20175 -12.02567 -11.77431 -11.44834 -11.12742 -10.57125 -10.23115 -10.04728 -9.36023 -8.55354 -6.14822 -0.53554 0.00644 0.91306 1.24880 1.40993 1.52410 1.54567 1.62475 1.74518 2.19148 2.28337 2.64174 2.66857 2.74077 2.83129 3.00062 3.25162 3.39816 3.56335 3.78251 3.86592 4.04258 4.09418 4.14893 4.17233 4.34128 4.38997 4.64377 4.84755 4.98315 5.10444 5.22591 5.29839 5.52977 5.54990 5.74100 6.02301 6.41878 6.50630 6.85655 7.15301 7.72736 8.61423 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.022096 B = 0.002755 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.893454 B =10160.050287 C =10517.354900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C 0.221 3.779 3 C 0.175 3.825 4 N -0.459 5.459 5 C -0.350 4.350 6 H 0.045 0.955 7 C 0.015 3.985 8 N -0.897 5.897 9 Si 0.928 3.072 10 H -0.221 1.221 11 H -0.286 1.286 12 H -0.233 1.233 13 C 0.489 3.511 14 O -0.609 6.609 15 C -0.192 4.192 16 C -0.036 4.036 17 C -0.074 4.074 18 C -0.075 4.075 19 C -0.111 4.111 20 C -0.065 4.065 21 C -0.195 4.195 22 C 0.511 3.489 23 F -0.182 7.182 24 F -0.175 7.175 25 F -0.182 7.182 26 C -0.063 4.063 27 H 0.114 0.886 28 H 0.177 0.823 29 H 0.284 0.716 30 H 0.165 0.835 31 H 0.120 0.880 32 H 0.159 0.841 33 H 0.173 0.827 34 H 0.157 0.843 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.435 26.386 2.859 26.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.145 5.145 2 C -0.098 4.098 3 C 0.050 3.950 4 N -0.179 5.179 5 C -0.478 4.478 6 H 0.063 0.937 7 C -0.190 4.190 8 N -0.532 5.532 9 Si 0.748 3.252 10 H -0.145 1.145 11 H -0.212 1.212 12 H -0.155 1.155 13 C 0.283 3.717 14 O -0.494 6.494 15 C -0.213 4.213 16 C -0.056 4.056 17 C -0.074 4.074 18 C -0.092 4.092 19 C -0.128 4.128 20 C -0.083 4.083 21 C -0.197 4.197 22 C 0.457 3.543 23 F -0.163 7.163 24 F -0.157 7.157 25 F -0.164 7.164 26 C -0.081 4.081 27 H 0.131 0.869 28 H 0.194 0.806 29 H 0.094 0.906 30 H 0.182 0.818 31 H 0.138 0.862 32 H 0.176 0.824 33 H 0.190 0.810 34 H 0.175 0.825 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.034 25.961 2.383 26.070 hybrid contribution 0.852 -0.864 -0.455 1.296 sum 0.819 25.097 1.928 25.184 Atomic orbital electron populations 1.81085 1.14119 1.10410 1.08910 1.30091 0.95829 0.91620 0.92277 1.20019 0.80373 1.05519 0.89115 1.43461 1.56832 1.06333 1.11303 1.18584 1.47458 0.82192 0.99565 0.93706 1.26305 0.96147 0.95605 1.00909 1.69882 1.40628 1.09394 1.33269 0.86150 0.79786 0.80480 0.78753 1.14512 1.21231 1.15519 1.18977 0.80613 0.87689 0.84445 1.90684 1.50614 1.79783 1.28331 1.23094 1.05427 0.90753 1.01985 1.22227 0.93727 0.91126 0.98561 1.18914 1.01945 0.91676 0.94890 1.22044 0.93796 0.96973 0.96421 1.21481 0.99116 0.92130 1.00101 1.21417 0.94058 1.02139 0.90709 1.19913 1.10733 0.93659 0.95354 1.18332 0.73940 0.79716 0.82306 1.93224 1.49526 1.95939 1.77659 1.93185 1.91227 1.44526 1.86728 1.93192 1.60394 1.86965 1.75834 1.21209 0.95939 0.91454 0.99496 0.86863 0.80589 0.90577 0.81811 0.86248 0.82357 0.80986 0.82528 0.84370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -17.79 18.54 20.01 0.37 -17.41 16 2 C 0.22 7.58 15.76 89.44 1.41 8.99 16 3 C 0.18 5.42 4.49 84.57 0.38 5.80 16 4 N -0.46 -19.89 2.17 -650.49 -1.41 -21.30 16 5 C -0.35 -19.17 9.37 84.15 0.79 -18.38 16 6 H 0.04 2.97 7.85 -2.91 -0.02 2.94 16 7 C 0.01 0.76 5.25 84.98 0.45 1.21 16 8 N -0.90 -50.15 13.95 21.69 0.30 -49.84 16 9 Si 0.93 34.52 25.22 68.60 1.73 36.25 16 10 H -0.22 -6.59 6.60 99.48 0.66 -5.94 16 11 H -0.29 -11.00 7.11 99.48 0.71 -10.30 16 12 H -0.23 -7.88 7.11 99.48 0.71 -7.17 16 13 C 0.49 20.79 7.55 86.32 0.65 21.44 16 14 O -0.61 -32.17 16.06 -4.54 -0.07 -32.24 16 15 C -0.19 -5.48 8.61 23.60 0.20 -5.28 16 16 C -0.04 -0.95 9.46 23.86 0.23 -0.72 16 17 C -0.07 -1.48 5.87 -20.15 -0.12 -1.60 16 18 C -0.07 -1.06 9.41 22.58 0.21 -0.85 16 19 C -0.11 -1.16 10.03 22.22 0.22 -0.94 16 20 C -0.07 -0.82 9.40 22.35 0.21 -0.61 16 21 C -0.20 -3.34 5.45 -19.91 -0.11 -3.45 16 22 C 0.51 9.20 3.36 71.24 0.24 9.44 16 23 F -0.18 -3.57 17.30 44.97 0.78 -2.79 16 24 F -0.18 -2.97 16.46 44.97 0.74 -2.23 16 25 F -0.18 -3.66 16.45 44.97 0.74 -2.92 16 26 C -0.06 -1.22 9.14 22.58 0.21 -1.01 16 27 H 0.11 3.52 3.15 -2.39 -0.01 3.51 16 28 H 0.18 3.14 6.06 -2.39 -0.01 3.12 16 29 H 0.28 14.42 8.31 -92.70 -0.77 13.65 16 30 H 0.16 3.06 4.21 -2.91 -0.01 3.04 16 31 H 0.12 3.60 7.52 -2.91 -0.02 3.58 16 32 H 0.16 1.53 6.17 -2.91 -0.02 1.52 16 33 H 0.17 0.65 8.06 -2.91 -0.02 0.63 16 34 H 0.16 1.27 7.60 -2.91 -0.02 1.25 16 35 H 0.14 2.62 7.60 -2.91 -0.02 2.60 16 Total: -1.00 -75.31 326.62 9.29 -66.02 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 1.14 Total: 12.44 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: 4.97 Total: 14.02 kcal Atomic # 7 Polarization: -87.82 SS G_CDS: -0.73 Total: -88.56 kcal Atomic # 8 Polarization: -32.17 SS G_CDS: -0.07 Total: -32.24 kcal Atomic # 9 Polarization: -10.20 SS G_CDS: 2.26 Total: -7.94 kcal Atomic # 14 Polarization: 34.52 SS G_CDS: 1.73 Total: 36.25 kcal Total: -75.31 9.29 -66.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060859722.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.007 kcal (2) G-P(sol) polarization free energy of solvation -75.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds