Wall clock time and date at job start Tue Mar 31 2020 13:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 119.99936 * 2 1 4 4 H 1.48501 * 109.46908 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47314 * 299.99603 * 3 2 1 6 6 H 1.48498 * 109.47145 * 59.99829 * 3 2 1 7 7 C 1.37879 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00300 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99724 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47009 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46860 * 179.97438 * 10 9 7 12 12 O 1.45201 * 109.46699 * 179.97438 * 11 10 9 13 13 C 1.34710 * 116.99994 * 179.97438 * 12 11 10 14 14 O 1.21470 * 120.00077 * 0.02562 * 13 12 11 15 15 C 1.47721 * 120.00177 * 180.02562 * 13 12 11 16 16 C 1.39626 * 120.15128 * 359.72040 * 15 13 12 17 17 C 1.37943 * 119.85196 * 180.25285 * 16 15 13 18 18 N 1.48018 * 119.92654 * 180.02562 * 17 16 15 19 19 O 1.21797 * 120.00114 * 180.02562 * 18 17 16 20 20 O 1.21795 * 120.00144 * 0.02562 * 18 17 16 21 21 C 1.38367 * 120.14839 * 0.02800 * 17 16 15 22 22 C 1.38364 * 120.30292 * 359.97438 * 21 17 16 23 23 N 1.48019 * 119.92363 * 180.02562 * 22 21 17 24 24 O 1.21802 * 119.99793 * 179.97438 * 23 22 21 25 25 O 1.21800 * 120.00438 * 359.97438 * 23 22 21 26 26 C 1.37940 * 120.15303 * 359.97438 * 22 21 17 27 27 H 0.97002 * 119.99996 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47666 * 59.99590 * 9 7 2 29 29 H 1.09001 * 109.46981 * 299.99469 * 9 7 2 30 30 H 1.09001 * 109.46534 * 59.99910 * 10 9 7 31 31 H 1.09001 * 109.46962 * 299.99661 * 10 9 7 32 32 H 1.08990 * 109.47229 * 60.00259 * 11 10 9 33 33 H 1.09001 * 109.47092 * 299.99626 * 11 10 9 34 34 H 1.08004 * 120.07288 * 0.25512 * 16 15 13 35 35 H 1.07999 * 119.85078 * 180.02562 * 21 17 16 36 36 H 1.07998 * 120.07857 * 179.97438 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 8 2.4238 -6.0907 0.0006 13 6 1.9089 -7.3356 0.0016 14 8 0.7047 -7.4948 0.0024 15 6 2.8088 -8.5071 0.0016 16 6 4.1935 -8.3278 -0.0053 17 6 5.0280 -9.4262 -0.0105 18 7 6.4961 -9.2380 -0.0172 19 8 7.2343 -10.2069 -0.0223 20 8 6.9662 -8.1144 -0.0177 21 6 4.4957 -10.7034 -0.0095 22 6 3.1245 -10.8883 -0.0027 23 7 2.5642 -12.2583 -0.0011 24 8 1.3573 -12.4226 0.0053 25 8 3.3099 -13.2213 -0.0062 26 6 2.2785 -9.7988 0.0036 27 1 -0.4850 0.8401 -0.0004 28 1 0.6246 -2.5572 -0.8896 29 1 0.6241 -2.5567 0.8904 30 1 2.8719 -3.6043 0.8905 31 1 2.8719 -3.6044 -0.8895 32 1 0.8533 -5.0451 -0.8885 33 1 0.8539 -5.0446 0.8914 34 1 4.6102 -7.3314 -0.0065 35 1 5.1536 -11.5599 -0.0132 36 1 1.2084 -9.9445 0.0084 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061353013.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:31 Heat of formation + Delta-G solvation = -66.281917 kcal Electronic energy + Delta-G solvation = -25696.690645 eV Core-core repulsion = 21346.204001 eV Total energy + Delta-G solvation = -4350.486644 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.093 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.17020 -42.75234 -41.21823 -39.80243 -37.32979 -37.23499 -37.00053 -34.25994 -33.53096 -33.25383 -31.81837 -27.73334 -27.63380 -27.34408 -25.53905 -23.44431 -23.12759 -21.90743 -20.72951 -20.27122 -19.66396 -19.11793 -18.77014 -18.38349 -18.15858 -17.82440 -17.76219 -16.99043 -16.84906 -16.42651 -16.08109 -14.77003 -14.55890 -14.07094 -14.00899 -13.73360 -13.44909 -12.50820 -12.36493 -12.27713 -12.21930 -12.18935 -12.10190 -11.86416 -11.80590 -11.74174 -11.21823 -11.12218 -11.10117 -10.86983 -10.82290 -10.70953 -10.64981 -9.94401 -9.68558 -9.28169 -8.49671 -6.14173 -4.17812 -1.30075 -1.18193 -0.07557 0.17080 0.52220 0.64644 1.50448 1.98442 2.33344 3.17462 3.20220 3.23461 3.27495 3.31622 3.35402 3.51114 3.52286 4.12659 4.26962 4.36185 4.49173 4.71288 4.74166 5.22011 5.25483 5.28745 5.49506 5.56493 5.71792 5.97662 6.31166 6.50145 6.77403 6.84829 6.90432 7.22083 7.45929 7.54703 7.83190 8.22708 8.88505 9.47486 10.97168 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.016937 B = 0.002348 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.759612 B =11919.765424 C =13546.770055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.523 4.523 8 H 0.059 0.941 9 C 0.024 3.976 10 C -0.110 4.110 11 C 0.069 3.931 12 O -0.347 6.347 13 C 0.508 3.492 14 O -0.482 6.482 15 C -0.105 4.105 16 C 0.045 3.955 17 C -0.053 4.053 18 N 0.025 4.975 19 O -0.139 6.139 20 O -0.125 6.125 21 C 0.031 3.969 22 C -0.052 4.052 23 N 0.027 4.973 24 O -0.131 6.131 25 O -0.136 6.136 26 C 0.047 3.953 27 H 0.262 0.738 28 H 0.020 0.980 29 H 0.020 0.980 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.192 0.808 35 H 0.189 0.811 36 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.127 -23.209 -0.005 24.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.562 4.562 8 H 0.077 0.923 9 C -0.013 4.013 10 C -0.148 4.148 11 C -0.003 4.003 12 O -0.263 6.263 13 C 0.350 3.650 14 O -0.371 6.371 15 C -0.108 4.108 16 C 0.026 3.974 17 C -0.136 4.136 18 N 0.551 4.449 19 O -0.356 6.356 20 O -0.346 6.346 21 C 0.011 3.989 22 C -0.136 4.136 23 N 0.552 4.448 24 O -0.350 6.350 25 O -0.355 6.355 26 C 0.028 3.972 27 H 0.072 0.928 28 H 0.039 0.961 29 H 0.039 0.961 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.209 0.791 35 H 0.207 0.793 36 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 7.152 -22.503 -0.002 23.612 hybrid contribution 0.462 0.651 -0.001 0.798 sum 7.614 -21.853 -0.003 23.141 Atomic orbital electron populations 1.69966 1.06116 1.26822 1.50360 1.25031 0.94891 0.99466 0.95048 0.86480 0.80104 0.83433 0.77686 1.19607 1.20913 1.20918 1.21175 0.93180 0.90533 1.51269 0.92290 1.19063 0.93771 0.90646 0.97800 1.21835 1.00127 0.90492 1.02343 1.23780 0.91004 0.82617 1.02901 1.86531 1.42931 1.14205 1.82609 1.20238 0.86439 0.83840 0.74497 1.90932 1.15096 1.86751 1.44284 1.19046 0.91982 0.92135 1.07604 1.21905 0.91759 1.01131 0.82624 1.20714 0.82521 0.94661 1.15698 1.43228 1.02005 1.01200 0.98512 1.94612 1.56105 1.32191 1.52733 1.94659 1.77899 1.09954 1.52039 1.20904 0.93974 0.98317 0.85703 1.20573 0.92756 0.84159 1.16092 1.43208 1.01285 1.01890 0.98419 1.94640 0.96454 1.91566 1.52363 1.94616 1.57779 1.30472 1.52591 1.21541 1.03666 0.88684 0.83277 0.92840 0.96147 0.96139 0.91826 0.91818 0.90754 0.90742 0.79089 0.79340 0.79435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.83 13.29 55.43 0.74 -25.09 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -13.98 9.11 -34.44 -0.31 -14.30 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.11 -2.00 5.53 -26.73 -0.15 -2.15 16 11 C 0.07 1.05 5.48 37.16 0.20 1.25 16 12 O -0.35 -4.38 9.47 -40.52 -0.38 -4.77 16 13 C 0.51 5.68 7.90 34.61 0.27 5.95 16 14 O -0.48 -6.60 16.14 -19.24 -0.31 -6.91 16 15 C -0.10 -0.81 5.87 -104.98 -0.62 -1.43 16 16 C 0.04 0.31 9.12 -39.17 -0.36 -0.05 16 17 C -0.05 -0.36 6.84 -80.01 -0.55 -0.91 16 18 N 0.03 0.23 4.45 33.93 0.15 0.38 16 19 O -0.14 -1.32 18.44 -29.46 -0.54 -1.87 16 20 O -0.12 -1.28 18.44 -29.46 -0.54 -1.82 16 21 C 0.03 0.18 9.06 -39.49 -0.36 -0.17 16 22 C -0.05 -0.36 6.84 -80.01 -0.55 -0.90 16 23 N 0.03 0.23 4.45 33.93 0.15 0.38 16 24 O -0.13 -1.26 18.44 -29.46 -0.54 -1.81 16 25 O -0.14 -1.25 18.44 -29.46 -0.54 -1.79 16 26 C 0.05 0.32 9.10 -39.17 -0.36 -0.03 16 27 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.19 1.21 7.16 -52.48 -0.38 0.83 16 35 H 0.19 0.88 7.14 -52.49 -0.37 0.51 16 36 H 0.19 1.21 7.20 -52.49 -0.38 0.83 16 LS Contribution 344.10 15.07 5.19 5.19 Total: -1.00 -30.21 344.10 -7.87 -38.08 By element: Atomic # 1 Polarization: -1.74 SS G_CDS: -3.21 Total: -4.95 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -3.00 Total: -10.83 kcal Atomic # 7 Polarization: -25.37 SS G_CDS: 1.04 Total: -24.33 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: -2.87 Total: -18.96 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.21 -7.87 -38.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061353013.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.197 kcal (2) G-P(sol) polarization free energy of solvation -30.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds