Wall clock time and date at job start Tue Mar 31 2020 13:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 119.99936 * 2 1 4 4 H 1.48501 * 109.46908 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47314 * 299.99603 * 3 2 1 6 6 H 1.48498 * 109.47145 * 59.99829 * 3 2 1 7 7 C 1.37879 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00300 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99724 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47009 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46860 * 179.97438 * 10 9 7 12 12 O 1.45201 * 109.46699 * 179.97438 * 11 10 9 13 13 C 1.34710 * 116.99994 * 179.97438 * 12 11 10 14 14 O 1.21470 * 120.00077 * 0.02562 * 13 12 11 15 15 C 1.47721 * 120.00177 * 180.02562 * 13 12 11 16 16 C 1.39626 * 120.15128 * 359.72040 * 15 13 12 17 17 C 1.37943 * 119.85196 * 180.25285 * 16 15 13 18 18 N 1.48018 * 119.92654 * 180.02562 * 17 16 15 19 19 O 1.21797 * 120.00114 * 180.02562 * 18 17 16 20 20 O 1.21795 * 120.00144 * 0.02562 * 18 17 16 21 21 C 1.38367 * 120.14839 * 0.02800 * 17 16 15 22 22 C 1.38364 * 120.30292 * 359.97438 * 21 17 16 23 23 N 1.48019 * 119.92363 * 180.02562 * 22 21 17 24 24 O 1.21802 * 119.99793 * 179.97438 * 23 22 21 25 25 O 1.21800 * 120.00438 * 359.97438 * 23 22 21 26 26 C 1.37940 * 120.15303 * 359.97438 * 22 21 17 27 27 H 0.97002 * 119.99996 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47666 * 59.99590 * 9 7 2 29 29 H 1.09001 * 109.46981 * 299.99469 * 9 7 2 30 30 H 1.09001 * 109.46534 * 59.99910 * 10 9 7 31 31 H 1.09001 * 109.46962 * 299.99661 * 10 9 7 32 32 H 1.08990 * 109.47229 * 60.00259 * 11 10 9 33 33 H 1.09001 * 109.47092 * 299.99626 * 11 10 9 34 34 H 1.08004 * 120.07288 * 0.25512 * 16 15 13 35 35 H 1.07999 * 119.85078 * 180.02562 * 21 17 16 36 36 H 1.07998 * 120.07857 * 179.97438 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 8 2.4238 -6.0907 0.0006 13 6 1.9089 -7.3356 0.0016 14 8 0.7047 -7.4948 0.0024 15 6 2.8088 -8.5071 0.0016 16 6 4.1935 -8.3278 -0.0053 17 6 5.0280 -9.4262 -0.0105 18 7 6.4961 -9.2380 -0.0172 19 8 7.2343 -10.2069 -0.0223 20 8 6.9662 -8.1144 -0.0177 21 6 4.4957 -10.7034 -0.0095 22 6 3.1245 -10.8883 -0.0027 23 7 2.5642 -12.2583 -0.0011 24 8 1.3573 -12.4226 0.0053 25 8 3.3099 -13.2213 -0.0062 26 6 2.2785 -9.7988 0.0036 27 1 -0.4850 0.8401 -0.0004 28 1 0.6246 -2.5572 -0.8896 29 1 0.6241 -2.5567 0.8904 30 1 2.8719 -3.6043 0.8905 31 1 2.8719 -3.6044 -0.8895 32 1 0.8533 -5.0451 -0.8885 33 1 0.8539 -5.0446 0.8914 34 1 4.6102 -7.3314 -0.0065 35 1 5.1536 -11.5599 -0.0132 36 1 1.2084 -9.9445 0.0084 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061353013.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:30 Heat of formation + Delta-G solvation = -80.430102 kcal Electronic energy + Delta-G solvation = -25697.304156 eV Core-core repulsion = 21346.204001 eV Total energy + Delta-G solvation = -4351.100156 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.093 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.82911 -43.42196 -42.08732 -40.58426 -38.11812 -37.98676 -37.92812 -35.99312 -34.24370 -34.02547 -33.51161 -29.21072 -28.29553 -28.15766 -26.58843 -24.92014 -23.83816 -22.74445 -22.21117 -21.20242 -20.33474 -19.81352 -19.46615 -19.03061 -18.81390 -18.79674 -18.48677 -18.29505 -17.91703 -17.63473 -16.94451 -16.48659 -15.89398 -15.06015 -14.94665 -14.32843 -14.30644 -14.08582 -13.92820 -13.80853 -12.97827 -12.94351 -12.89859 -12.88486 -12.58436 -12.53229 -12.51573 -12.47837 -12.45319 -12.18504 -12.15627 -11.69607 -11.53863 -11.51431 -11.39774 -11.24366 -10.58143 -8.22799 -6.33402 -1.93267 -1.80313 -0.79799 -0.47629 -0.15618 0.01148 0.75498 1.06575 1.41137 1.42574 1.54998 1.58877 2.39789 2.51403 2.61560 2.64989 2.90932 2.92329 3.12057 3.36658 3.63959 3.93094 3.97084 3.98352 4.11022 4.14209 4.38795 4.75313 4.79306 4.81027 4.87479 5.04350 5.19384 5.49618 5.64340 5.80691 6.11961 6.15359 6.16718 6.25189 6.83417 7.36506 8.89327 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.016937 B = 0.002348 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.759612 B =11919.765424 C =13546.770055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.964 3.036 4 H -0.260 1.260 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.540 4.540 8 H 0.065 0.935 9 C 0.024 3.976 10 C -0.096 4.096 11 C 0.079 3.921 12 O -0.343 6.343 13 C 0.514 3.486 14 O -0.509 6.509 15 C -0.106 4.106 16 C 0.062 3.938 17 C -0.051 4.051 18 N 0.028 4.972 19 O -0.138 6.138 20 O -0.152 6.152 21 C 0.054 3.946 22 C -0.050 4.050 23 N 0.029 4.971 24 O -0.155 6.155 25 O -0.135 6.135 26 C 0.064 3.936 27 H 0.264 0.736 28 H -0.002 1.002 29 H -0.001 1.001 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.199 0.801 35 H 0.207 0.793 36 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.765 -24.019 -0.006 25.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.789 3.211 4 H -0.183 1.183 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.578 4.578 8 H 0.084 0.916 9 C -0.013 4.013 10 C -0.134 4.134 11 C 0.007 3.993 12 O -0.259 6.259 13 C 0.358 3.642 14 O -0.398 6.398 15 C -0.109 4.109 16 C 0.043 3.957 17 C -0.135 4.135 18 N 0.551 4.449 19 O -0.358 6.358 20 O -0.367 6.367 21 C 0.034 3.966 22 C -0.134 4.134 23 N 0.552 4.448 24 O -0.369 6.369 25 O -0.356 6.356 26 C 0.045 3.955 27 H 0.073 0.927 28 H 0.017 0.983 29 H 0.017 0.983 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.216 0.784 35 H 0.224 0.776 36 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 8.783 -23.290 -0.003 24.891 hybrid contribution -0.022 0.774 0.000 0.774 sum 8.762 -22.516 -0.004 24.161 Atomic orbital electron populations 1.70091 1.07793 1.27811 1.51654 1.25960 0.95738 1.03390 0.94759 0.85401 0.79228 0.78804 0.77651 1.18347 1.20576 1.20586 1.21663 0.93780 0.91888 1.50488 0.91635 1.18945 0.94315 0.92365 0.95651 1.21492 0.98813 0.90112 1.02981 1.23342 0.90629 0.82499 1.02866 1.86486 1.41969 1.14449 1.82983 1.20596 0.86572 0.83779 0.73290 1.90933 1.16398 1.86906 1.45598 1.18560 0.91595 0.90892 1.09818 1.21904 0.91202 1.01567 0.80997 1.20511 0.81280 0.94931 1.16778 1.43384 1.02625 1.00911 0.98018 1.94605 1.56803 1.32067 1.52302 1.94670 1.78500 1.10193 1.53377 1.21032 0.93740 0.98507 0.83290 1.20366 0.92853 0.83123 1.17047 1.43346 1.01130 1.02340 0.97996 1.94654 0.96848 1.91905 1.53536 1.94610 1.57624 1.31129 1.52207 1.21534 1.04000 0.88272 0.81714 0.92737 0.98314 0.98306 0.91136 0.91128 0.90903 0.90888 0.78438 0.77619 0.79028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.86 13.29 21.45 0.28 -54.58 16 2 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 3 Si 0.96 42.56 29.54 68.60 2.03 44.59 16 4 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.54 -28.94 9.11 25.60 0.23 -28.71 16 8 H 0.07 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.02 1.18 4.97 29.85 0.15 1.33 16 10 C -0.10 -3.45 5.53 30.60 0.17 -3.28 16 11 C 0.08 2.38 5.48 71.98 0.39 2.77 16 12 O -0.34 -8.18 9.47 -56.20 -0.53 -8.72 16 13 C 0.51 10.79 7.90 70.33 0.56 11.34 16 14 O -0.51 -13.51 16.14 19.93 0.32 -13.19 16 15 C -0.11 -1.42 5.87 -20.10 -0.12 -1.54 16 16 C 0.06 0.70 9.12 22.54 0.21 0.91 16 17 C -0.05 -0.58 6.84 36.34 0.25 -0.33 16 18 N 0.03 0.45 4.45 -46.56 -0.21 0.24 16 19 O -0.14 -2.33 18.44 18.89 0.35 -1.99 16 20 O -0.15 -2.91 18.44 18.89 0.35 -2.56 16 21 C 0.05 0.49 9.06 22.33 0.20 0.69 16 22 C -0.05 -0.56 6.84 36.33 0.25 -0.32 16 23 N 0.03 0.45 4.45 -46.56 -0.21 0.24 16 24 O -0.15 -2.83 18.44 18.88 0.35 -2.48 16 25 O -0.13 -2.21 18.44 18.89 0.35 -1.86 16 26 C 0.06 0.74 9.10 22.54 0.21 0.95 16 27 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 28 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 29 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 30 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.20 2.06 7.16 -2.91 -0.02 2.04 16 35 H 0.21 1.24 7.14 -2.91 -0.02 1.22 16 36 H 0.19 2.17 7.20 -2.91 -0.02 2.15 16 Total: -1.00 -64.70 344.10 7.18 -57.52 By element: Atomic # 1 Polarization: -2.62 SS G_CDS: 1.15 Total: -1.47 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: 2.96 Total: -15.75 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: -0.13 Total: -54.09 kcal Atomic # 8 Polarization: -31.97 SS G_CDS: 1.18 Total: -30.79 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -64.70 7.18 -57.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061353013.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.914 kcal (2) G-P(sol) polarization free energy of solvation -64.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds