Wall clock time and date at job start Tue Mar 31 2020 14:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86805 * 120.00066 * 2 1 4 4 H 1.48499 * 109.47247 * 270.00171 * 3 2 1 5 5 H 1.48504 * 109.46937 * 30.00148 * 3 2 1 6 6 H 1.48497 * 109.47019 * 150.00238 * 3 2 1 7 7 C 1.38796 * 120.00021 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00052 * 359.97438 * 7 2 1 9 9 S 1.76202 * 120.00181 * 180.02562 * 7 2 1 10 10 C 1.80994 * 100.00150 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47211 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99905 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99922 * 179.97438 * 11 10 9 14 14 N 1.40106 * 119.99602 * 179.97438 * 13 11 10 15 15 C 1.34775 * 119.99602 * 179.97438 * 14 13 11 16 16 O 1.21286 * 120.00172 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99922 * 180.02562 * 15 14 13 18 18 C 1.53001 * 109.47427 * 179.97438 * 17 15 14 19 19 O 1.42902 * 109.47386 * 179.97438 * 18 17 15 20 20 C 1.35898 * 116.99694 * 180.02562 * 19 18 17 21 21 C 1.38735 * 120.05254 * 179.97438 * 20 19 18 22 22 C 1.38144 * 119.94607 * 179.97438 * 21 20 19 23 23 C 1.38266 * 120.05233 * 0.02562 * 22 21 20 24 24 C 1.38269 * 120.11595 * 359.95530 * 23 22 21 25 25 C 1.38142 * 120.04935 * 0.04230 * 24 23 22 26 26 H 0.97002 * 119.99756 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47142 * 59.99531 * 10 9 7 28 28 H 1.08998 * 109.47213 * 299.99770 * 10 9 7 29 29 H 0.96996 * 120.00132 * 0.02562 * 13 11 10 30 30 H 0.96996 * 120.00265 * 359.97438 * 14 13 11 31 31 H 1.08999 * 109.47374 * 59.99814 * 17 15 14 32 32 H 1.09006 * 109.46766 * 299.99807 * 17 15 14 33 33 H 1.08999 * 109.46920 * 59.99629 * 18 17 15 34 34 H 1.08998 * 109.47220 * 299.99999 * 18 17 15 35 35 H 1.08002 * 120.02704 * 359.70561 * 21 20 19 36 36 H 1.08001 * 119.97447 * 179.97438 * 22 21 20 37 37 H 1.08000 * 119.94089 * 179.97438 * 23 22 21 38 38 H 1.07992 * 119.97577 * 180.02562 * 24 23 22 39 39 H 1.08005 * 120.02748 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 2.4979 2.0465 -1.4000 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4704 -2.1373 -0.0005 9 16 3.7724 -1.2021 0.0001 10 6 4.0867 -2.9845 -0.0001 11 6 5.5731 -3.2325 -0.0002 12 8 6.3441 -2.2962 -0.0006 13 7 6.0457 -4.4947 0.0001 14 7 7.4277 -4.7252 -0.0006 15 6 7.9003 -5.9873 0.0003 16 8 7.1292 -6.9236 0.0011 17 6 9.3867 -6.2354 0.0001 18 6 9.6524 -7.7421 0.0018 19 8 11.0620 -7.9773 0.0011 20 6 11.4712 -9.2732 0.0019 21 6 12.8255 -9.5741 0.0008 22 6 13.2391 -10.8922 0.0021 23 6 12.3044 -11.9111 0.0041 24 6 10.9541 -11.6139 0.0056 25 6 10.5355 -10.2974 0.0043 26 1 -0.4850 0.8401 -0.0004 27 1 3.6440 -3.4313 -0.8903 28 1 3.6434 -3.4317 0.8896 29 1 5.4291 -5.2434 0.0000 30 1 8.0443 -3.9764 -0.0016 31 1 9.8299 -5.7877 0.8897 32 1 9.8294 -5.7890 -0.8904 33 1 9.2092 -8.1902 -0.8875 34 1 9.2098 -8.1881 0.8924 35 1 13.5559 -8.7785 -0.0056 36 1 14.2932 -11.1270 0.0008 37 1 12.6297 -12.9410 0.0047 38 1 10.2260 -12.4115 0.0076 39 1 9.4806 -10.0656 0.0051 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061476674.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:20 Heat of formation + Delta-G solvation = -54.110453 kcal Electronic energy + Delta-G solvation = -22679.872440 eV Core-core repulsion = 18908.499556 eV Total energy + Delta-G solvation = -3771.372884 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.75881 -40.29766 -39.02256 -37.79518 -35.46262 -33.04325 -32.50699 -31.75064 -31.28318 -29.97044 -28.74517 -25.70359 -25.11540 -22.96200 -22.24360 -21.64866 -20.79192 -18.93218 -18.12839 -17.93872 -17.25480 -16.92005 -16.45662 -16.12901 -15.81831 -15.74256 -15.08114 -15.01292 -14.92643 -14.39562 -14.06679 -13.91422 -13.74622 -13.64623 -13.56292 -12.86331 -12.62508 -12.38641 -12.26240 -11.99794 -11.37861 -11.35154 -11.23427 -11.21138 -11.06884 -10.81300 -10.55528 -10.01179 -9.86558 -9.41925 -9.07227 -8.62748 -8.62310 -8.53695 -7.02164 -6.35179 -4.08945 0.92526 1.03325 1.48949 2.02622 2.63958 2.70976 2.87866 3.27663 3.38424 3.43358 3.44848 3.89559 4.11392 4.26177 4.39498 4.41834 4.44234 4.53923 4.66187 4.72910 4.87937 4.95407 4.99088 5.03715 5.11698 5.17794 5.20576 5.31422 5.58662 5.58875 5.86202 5.89048 6.00174 6.12670 6.34614 6.46090 6.48142 6.96988 7.33091 7.64442 7.87580 8.26106 8.35789 9.10162 10.73898 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.054606 B = 0.001601 C = 0.001558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.638094 B =17479.459135 C =17966.348699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.097 3.903 3 Si 0.856 3.144 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.236 1.236 7 C -0.525 4.525 8 H 0.090 0.910 9 S -0.132 6.132 10 C -0.117 4.117 11 C 0.534 3.466 12 O -0.517 6.517 13 N -0.530 5.530 14 N -0.516 5.516 15 C 0.519 3.481 16 O -0.543 6.543 17 C -0.131 4.131 18 C 0.076 3.924 19 O -0.317 6.317 20 C 0.132 3.868 21 C -0.153 4.153 22 C -0.083 4.083 23 C -0.160 4.160 24 C -0.080 4.080 25 C -0.208 4.208 26 H 0.272 0.728 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.432 0.568 30 H 0.434 0.566 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.840 -21.120 0.083 32.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.160 1.160 7 C -0.673 4.673 8 H 0.108 0.892 9 S 0.094 5.906 10 C -0.269 4.269 11 C 0.321 3.679 12 O -0.390 6.390 13 N -0.282 5.282 14 N -0.263 5.263 15 C 0.305 3.695 16 O -0.419 6.419 17 C -0.172 4.172 18 C 0.000 4.000 19 O -0.231 6.231 20 C 0.087 3.913 21 C -0.172 4.172 22 C -0.101 4.101 23 C -0.179 4.179 24 C -0.098 4.098 25 C -0.226 4.226 26 H 0.082 0.918 27 H 0.123 0.877 28 H 0.123 0.877 29 H 0.274 0.726 30 H 0.276 0.724 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.149 0.851 36 H 0.146 0.854 37 H 0.141 0.859 38 H 0.143 0.857 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 25.494 -19.925 0.087 32.357 hybrid contribution -1.066 -0.391 -0.035 1.136 sum 24.428 -20.316 0.052 31.772 Atomic orbital electron populations 1.69936 1.05904 1.27867 1.47649 1.24700 0.94448 0.98949 0.93084 0.86746 0.81848 0.83329 0.79969 1.19147 1.19819 1.15960 1.22299 0.87998 0.97704 1.59265 0.89164 1.84816 1.09642 0.98685 1.97486 1.23215 0.91606 1.05344 1.06703 1.20669 0.91267 0.80568 0.75444 1.90729 1.58356 1.41640 1.48305 1.45129 0.95118 1.09645 1.78259 1.44766 0.97272 1.09024 1.75240 1.20428 0.90795 0.81440 0.76883 1.90763 1.58838 1.41893 1.50454 1.21326 0.91672 0.97183 1.07006 1.22392 0.79137 0.95015 1.03429 1.85959 1.25080 1.23344 1.88684 1.18979 0.93511 0.82685 0.96131 1.20471 0.92911 0.97327 1.06485 1.20984 0.99801 0.91709 0.97576 1.21099 0.93124 0.99434 1.04201 1.20998 0.96073 0.95777 0.96983 1.21381 0.99729 0.93286 1.08237 0.91833 0.87703 0.87658 0.72568 0.72417 0.86915 0.86911 0.90733 0.90724 0.85143 0.85354 0.85914 0.85706 0.85093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.91 13.97 55.49 0.78 -25.14 16 2 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 3 Si 0.86 21.12 27.74 -169.99 -4.72 16.40 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 6 H -0.24 -5.76 6.74 56.52 0.38 -5.38 16 7 C -0.53 -14.63 10.04 30.94 0.31 -14.32 16 8 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 9 S -0.13 -3.18 18.55 -107.50 -1.99 -5.17 16 10 C -0.12 -2.09 6.16 36.01 0.22 -1.87 16 11 C 0.53 8.71 7.96 -10.99 -0.09 8.62 16 12 O -0.52 -9.98 15.70 5.55 0.09 -9.89 16 13 N -0.53 -6.77 6.26 31.22 0.20 -6.57 16 14 N -0.52 -5.49 6.26 31.22 0.20 -5.29 16 15 C 0.52 5.05 7.95 -10.99 -0.09 4.96 16 16 O -0.54 -6.94 15.82 5.55 0.09 -6.86 16 17 C -0.13 -0.83 6.07 -27.88 -0.17 -1.00 16 18 C 0.08 0.58 4.03 37.16 0.15 0.73 16 19 O -0.32 -2.76 10.14 -19.42 -0.20 -2.96 16 20 C 0.13 1.17 6.69 -39.22 -0.26 0.90 16 21 C -0.15 -1.18 9.99 -39.43 -0.39 -1.58 16 22 C -0.08 -0.53 10.04 -39.61 -0.40 -0.93 16 23 C -0.16 -1.04 10.04 -39.56 -0.40 -1.44 16 24 C -0.08 -0.57 10.04 -39.61 -0.40 -0.97 16 25 C -0.21 -1.70 9.04 -39.44 -0.36 -2.06 16 26 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 27 H 0.10 1.73 8.14 -51.92 -0.42 1.30 16 28 H 0.11 1.73 8.14 -51.92 -0.42 1.31 16 29 H 0.43 4.95 8.00 -182.60 -1.46 3.49 16 30 H 0.43 4.08 8.00 -182.60 -1.46 2.62 16 31 H 0.11 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.11 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.59 7.62 -51.93 -0.40 0.19 16 34 H 0.07 0.59 7.62 -51.93 -0.40 0.19 16 35 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 37 H 0.12 0.54 8.06 -52.49 -0.42 0.12 16 38 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 39 H 0.13 0.98 6.30 -52.48 -0.33 0.65 16 LS Contribution 357.61 15.07 5.39 5.39 Total: -1.00 -34.66 357.61 -9.14 -43.80 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -7.00 Total: 2.57 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: -1.96 Total: -6.28 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 1.17 Total: -37.00 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.02 Total: -19.71 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.72 Total: 16.40 kcal Atomic # 16 Polarization: -3.18 SS G_CDS: -1.99 Total: -5.17 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.66 -9.14 -43.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061476674.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.312 kcal (2) G-P(sol) polarization free energy of solvation -34.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds