Wall clock time and date at job start Tue Mar 31 2020 14:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86805 * 120.00066 * 2 1 4 4 H 1.48499 * 109.47247 * 270.00171 * 3 2 1 5 5 H 1.48504 * 109.46937 * 30.00148 * 3 2 1 6 6 H 1.48497 * 109.47019 * 150.00238 * 3 2 1 7 7 C 1.38796 * 120.00021 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00052 * 359.97438 * 7 2 1 9 9 S 1.76202 * 120.00181 * 180.02562 * 7 2 1 10 10 C 1.80994 * 100.00150 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47211 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99905 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99922 * 179.97438 * 11 10 9 14 14 N 1.40106 * 119.99602 * 179.97438 * 13 11 10 15 15 C 1.34775 * 119.99602 * 179.97438 * 14 13 11 16 16 O 1.21286 * 120.00172 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99922 * 180.02562 * 15 14 13 18 18 C 1.53001 * 109.47427 * 179.97438 * 17 15 14 19 19 O 1.42902 * 109.47386 * 179.97438 * 18 17 15 20 20 C 1.35898 * 116.99694 * 180.02562 * 19 18 17 21 21 C 1.38735 * 120.05254 * 179.97438 * 20 19 18 22 22 C 1.38144 * 119.94607 * 179.97438 * 21 20 19 23 23 C 1.38266 * 120.05233 * 0.02562 * 22 21 20 24 24 C 1.38269 * 120.11595 * 359.95530 * 23 22 21 25 25 C 1.38142 * 120.04935 * 0.04230 * 24 23 22 26 26 H 0.97002 * 119.99756 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47142 * 59.99531 * 10 9 7 28 28 H 1.08998 * 109.47213 * 299.99770 * 10 9 7 29 29 H 0.96996 * 120.00132 * 0.02562 * 13 11 10 30 30 H 0.96996 * 120.00265 * 359.97438 * 14 13 11 31 31 H 1.08999 * 109.47374 * 59.99814 * 17 15 14 32 32 H 1.09006 * 109.46766 * 299.99807 * 17 15 14 33 33 H 1.08999 * 109.46920 * 59.99629 * 18 17 15 34 34 H 1.08998 * 109.47220 * 299.99999 * 18 17 15 35 35 H 1.08002 * 120.02704 * 359.70561 * 21 20 19 36 36 H 1.08001 * 119.97447 * 179.97438 * 22 21 20 37 37 H 1.08000 * 119.94089 * 179.97438 * 23 22 21 38 38 H 1.07992 * 119.97577 * 180.02562 * 24 23 22 39 39 H 1.08005 * 120.02748 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 2.4979 2.0465 -1.4000 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4704 -2.1373 -0.0005 9 16 3.7724 -1.2021 0.0001 10 6 4.0867 -2.9845 -0.0001 11 6 5.5731 -3.2325 -0.0002 12 8 6.3441 -2.2962 -0.0006 13 7 6.0457 -4.4947 0.0001 14 7 7.4277 -4.7252 -0.0006 15 6 7.9003 -5.9873 0.0003 16 8 7.1292 -6.9236 0.0011 17 6 9.3867 -6.2354 0.0001 18 6 9.6524 -7.7421 0.0018 19 8 11.0620 -7.9773 0.0011 20 6 11.4712 -9.2732 0.0019 21 6 12.8255 -9.5741 0.0008 22 6 13.2391 -10.8922 0.0021 23 6 12.3044 -11.9111 0.0041 24 6 10.9541 -11.6139 0.0056 25 6 10.5355 -10.2974 0.0043 26 1 -0.4850 0.8401 -0.0004 27 1 3.6440 -3.4313 -0.8903 28 1 3.6434 -3.4317 0.8896 29 1 5.4291 -5.2434 0.0000 30 1 8.0443 -3.9764 -0.0016 31 1 9.8299 -5.7877 0.8897 32 1 9.8294 -5.7890 -0.8904 33 1 9.2092 -8.1902 -0.8875 34 1 9.2098 -8.1881 0.8924 35 1 13.5559 -8.7785 -0.0056 36 1 14.2932 -11.1270 0.0008 37 1 12.6297 -12.9410 0.0047 38 1 10.2260 -12.4115 0.0076 39 1 9.4806 -10.0656 0.0051 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061476674.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:19 Heat of formation + Delta-G solvation = -78.349313 kcal Electronic energy + Delta-G solvation = -22680.923516 eV Core-core repulsion = 18908.499556 eV Total energy + Delta-G solvation = -3772.423960 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.62333 -41.03034 -40.13464 -38.36533 -36.54339 -34.67091 -33.82768 -32.71629 -31.85380 -30.64785 -29.90075 -27.85675 -25.79389 -23.51796 -22.86124 -22.74251 -21.69176 -19.96278 -19.43477 -19.10303 -18.38397 -17.57466 -17.24350 -17.09154 -16.82570 -16.74289 -16.67063 -16.06104 -16.00352 -15.54032 -15.15382 -14.91048 -14.81652 -14.44545 -14.29435 -14.25775 -13.87205 -13.34706 -13.02878 -12.98653 -12.81862 -12.73071 -12.49197 -12.47719 -11.88797 -11.80090 -11.73704 -11.55577 -11.24109 -11.16730 -10.57081 -9.94996 -9.58776 -9.18815 -9.00043 -8.51090 -6.22845 0.39500 0.43790 0.48698 1.09447 1.10589 1.32968 1.48672 1.53959 1.62898 2.08340 2.24871 2.62022 2.85027 2.87448 2.98711 3.39714 3.66454 3.88765 3.90338 3.93953 4.04095 4.16717 4.26048 4.34022 4.43565 4.46658 4.52679 4.65273 4.69568 4.81022 5.09477 5.35633 5.41679 5.49412 5.55653 5.61451 5.70963 5.84772 6.12769 6.30534 6.39598 6.69020 6.93615 7.16018 8.61203 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.054606 B = 0.001601 C = 0.001558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.638094 B =17479.459135 C =17966.348699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.046 3.954 3 Si 0.914 3.086 4 H -0.262 1.262 5 H -0.261 1.261 6 H -0.233 1.233 7 C -0.533 4.533 8 H 0.064 0.936 9 S -0.159 6.159 10 C -0.107 4.107 11 C 0.543 3.457 12 O -0.549 6.549 13 N -0.517 5.517 14 N -0.513 5.513 15 C 0.525 3.475 16 O -0.573 6.573 17 C -0.120 4.120 18 C 0.077 3.923 19 O -0.323 6.323 20 C 0.110 3.890 21 C -0.166 4.166 22 C -0.084 4.084 23 C -0.164 4.164 24 C -0.091 4.091 25 C -0.223 4.223 26 H 0.277 0.723 27 H 0.121 0.879 28 H 0.122 0.878 29 H 0.440 0.560 30 H 0.441 0.559 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.140 0.860 36 H 0.154 0.846 37 H 0.145 0.855 38 H 0.140 0.860 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.256 -21.915 0.100 34.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.159 4.159 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.185 1.185 6 H -0.157 1.157 7 C -0.681 4.681 8 H 0.082 0.918 9 S 0.067 5.933 10 C -0.259 4.259 11 C 0.329 3.671 12 O -0.425 6.425 13 N -0.267 5.267 14 N -0.262 5.262 15 C 0.313 3.687 16 O -0.451 6.451 17 C -0.160 4.160 18 C 0.001 3.999 19 O -0.237 6.237 20 C 0.065 3.935 21 C -0.184 4.184 22 C -0.102 4.102 23 C -0.182 4.182 24 C -0.109 4.109 25 C -0.242 4.242 26 H 0.086 0.914 27 H 0.139 0.861 28 H 0.140 0.860 29 H 0.284 0.716 30 H 0.285 0.715 31 H 0.154 0.846 32 H 0.154 0.846 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.157 0.843 36 H 0.171 0.829 37 H 0.163 0.837 38 H 0.158 0.842 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 27.920 -20.760 0.105 34.792 hybrid contribution -1.750 -0.400 -0.045 1.796 sum 26.169 -21.161 0.060 33.654 Atomic orbital electron populations 1.70023 1.07404 1.29054 1.48981 1.25567 0.95243 1.02311 0.92818 0.85869 0.80749 0.79521 0.80239 1.18663 1.18528 1.15714 1.22481 0.90317 0.96798 1.58473 0.91813 1.84652 1.06348 1.04625 1.97629 1.23158 0.93594 1.00726 1.08416 1.20116 0.90169 0.81245 0.75561 1.90722 1.58720 1.42788 1.50274 1.44760 0.96813 1.08667 1.76446 1.44956 0.95880 1.09814 1.75554 1.21019 0.91897 0.80453 0.75363 1.90761 1.59923 1.42735 1.51685 1.21320 0.88973 0.96545 1.09203 1.22362 0.78880 0.95796 1.02870 1.85926 1.25294 1.23553 1.88928 1.19245 0.94218 0.82785 0.97257 1.20742 0.92730 0.98344 1.06632 1.21339 1.01206 0.91180 0.96501 1.21445 0.92858 1.00682 1.03233 1.21290 0.97040 0.95781 0.96742 1.21509 0.99767 0.93904 1.08972 0.91372 0.86059 0.86022 0.71633 0.71530 0.84644 0.84639 0.91390 0.91379 0.84251 0.82880 0.83709 0.84183 0.85220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.88 13.97 21.65 0.30 -54.57 16 2 C 0.05 2.64 5.50 84.86 0.47 3.11 16 3 Si 0.91 43.52 27.74 68.60 1.90 45.42 16 4 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 6 H -0.23 -10.94 6.74 99.48 0.67 -10.27 16 7 C -0.53 -30.02 10.04 67.95 0.68 -29.34 16 8 H 0.06 3.80 8.03 -2.91 -0.02 3.77 16 9 S -0.16 -7.55 18.55 -56.49 -1.05 -8.59 16 10 C -0.11 -3.70 6.16 71.24 0.44 -3.26 16 11 C 0.54 16.85 7.96 87.66 0.70 17.54 16 12 O -0.55 -20.43 15.70 -3.05 -0.05 -20.48 16 13 N -0.52 -12.25 6.26 -173.53 -1.09 -13.33 16 14 N -0.51 -9.86 6.26 -173.53 -1.09 -10.94 16 15 C 0.52 9.23 7.95 87.66 0.70 9.93 16 16 O -0.57 -13.96 15.82 -3.05 -0.05 -14.01 16 17 C -0.12 -1.26 6.07 29.85 0.18 -1.08 16 18 C 0.08 1.10 4.03 71.98 0.29 1.39 16 19 O -0.32 -5.35 10.14 -92.40 -0.94 -6.29 16 20 C 0.11 1.88 6.69 22.51 0.15 2.03 16 21 C -0.17 -2.38 9.99 22.37 0.22 -2.16 16 22 C -0.08 -0.94 10.04 22.25 0.22 -0.72 16 23 C -0.16 -1.83 10.04 22.28 0.22 -1.61 16 24 C -0.09 -1.20 10.04 22.25 0.22 -0.98 16 25 C -0.22 -3.59 9.04 22.36 0.20 -3.39 16 26 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 27 H 0.12 3.83 8.14 -2.40 -0.02 3.81 16 28 H 0.12 3.84 8.14 -2.40 -0.02 3.82 16 29 H 0.44 9.27 8.00 -213.32 -1.71 7.57 16 30 H 0.44 7.31 8.00 -213.32 -1.71 5.60 16 31 H 0.14 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.14 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.07 1.05 7.62 -2.39 -0.02 1.03 16 34 H 0.07 1.05 7.62 -2.39 -0.02 1.03 16 35 H 0.14 1.62 8.06 -2.91 -0.02 1.59 16 36 H 0.15 0.84 8.06 -2.91 -0.02 0.82 16 37 H 0.15 0.91 8.06 -2.91 -0.02 0.88 16 38 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 39 H 0.13 1.99 6.30 -2.91 -0.02 1.97 16 Total: -1.00 -74.91 357.61 0.30 -74.60 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -2.35 Total: 16.71 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: 4.70 Total: -8.52 kcal Atomic # 7 Polarization: -76.98 SS G_CDS: -1.87 Total: -78.85 kcal Atomic # 8 Polarization: -39.74 SS G_CDS: -1.03 Total: -40.77 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 1.90 Total: 45.42 kcal Atomic # 16 Polarization: -7.55 SS G_CDS: -1.05 Total: -8.59 kcal Total: -74.91 0.30 -74.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061476674.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.746 kcal (2) G-P(sol) polarization free energy of solvation -74.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds