Wall clock time and date at job start Tue Mar 31 2020 14:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86796 * 120.00413 * 2 1 4 4 H 1.48500 * 109.47398 * 270.00152 * 3 2 1 5 5 H 1.48502 * 109.46881 * 30.00254 * 3 2 1 6 6 H 1.48500 * 109.47249 * 150.00032 * 3 2 1 7 7 C 1.38958 * 119.99595 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99705 * 198.20920 * 7 2 1 9 9 N 1.37091 * 120.00135 * 18.20408 * 7 2 1 10 10 C 1.34778 * 119.99818 * 44.29031 * 9 7 2 11 11 O 1.21289 * 120.00295 * 359.97438 * 10 9 7 12 12 C 1.50707 * 119.99855 * 179.97438 * 10 9 7 13 13 O 1.42902 * 109.46867 * 180.02562 * 12 10 9 14 14 C 1.35896 * 116.99448 * 179.97438 * 13 12 10 15 15 C 1.38768 * 120.04904 * 0.25476 * 14 13 12 16 16 C 1.38135 * 119.99860 * 180.20634 * 15 14 13 17 17 C 1.38256 * 120.07565 * 359.51853 * 16 15 14 18 18 N 1.48021 * 119.95296 * 180.25025 * 17 16 15 19 19 O 1.21799 * 120.00159 * 0.02562 * 18 17 16 20 20 O 1.21796 * 119.99864 * 179.97438 * 18 17 16 21 21 C 1.38471 * 120.08489 * 0.27317 * 17 16 15 22 22 F 1.35105 * 119.99189 * 179.97438 * 21 17 16 23 23 C 1.38384 * 120.00975 * 359.95832 * 21 17 16 24 24 C 1.46495 * 120.00145 * 224.29361 * 9 7 2 25 25 C 1.53001 * 117.49830 * 3.22117 * 24 9 7 26 26 C 1.52992 * 60.00224 * 252.51150 * 25 24 9 27 27 H 0.97004 * 119.99605 * 354.93360 * 1 2 3 28 28 H 1.08997 * 109.46765 * 60.00199 * 12 10 9 29 29 H 1.09000 * 109.47043 * 299.99943 * 12 10 9 30 30 H 1.08001 * 119.99829 * 359.97438 * 15 14 13 31 31 H 1.07993 * 119.95828 * 179.78865 * 16 15 14 32 32 H 1.07993 * 120.04303 * 179.97438 * 23 21 17 33 33 H 1.09005 * 115.55366 * 148.93695 * 24 9 7 34 34 H 1.08997 * 117.50019 * 0.02562 * 25 24 9 35 35 H 1.09001 * 117.49651 * 145.01955 * 25 24 9 36 36 H 1.09005 * 117.50515 * 252.51073 * 26 25 24 37 37 H 1.09002 * 117.51835 * 107.48110 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4958 2.0464 -1.4000 5 1 1.4457 2.6526 0.7001 6 1 3.5458 1.4400 0.7000 7 6 2.0088 -1.2035 -0.0005 8 1 3.0483 -1.2270 0.2917 9 7 1.3748 -2.3608 -0.3719 10 6 0.5782 -2.3737 -1.4591 11 8 0.4219 -1.3613 -2.1085 12 6 -0.1184 -3.6461 -1.8677 13 8 -0.8980 -3.4066 -3.0411 14 6 -1.5942 -4.4595 -3.5447 15 6 -1.5324 -5.6965 -2.9189 16 6 -2.2371 -6.7671 -3.4341 17 6 -3.0124 -6.6054 -4.5674 18 7 -3.7708 -7.7531 -5.1139 19 8 -3.7119 -8.8388 -4.5651 20 8 -4.4544 -7.6114 -6.1120 21 6 -3.0799 -5.3714 -5.1920 22 9 -3.8377 -5.2156 -6.2996 23 6 -2.3715 -4.2977 -4.6816 24 6 1.5630 -3.5834 0.4128 25 6 2.4182 -3.4863 1.6777 26 6 2.9640 -4.1979 0.4382 27 1 -0.4850 0.8368 0.0742 28 1 -0.7699 -3.9792 -1.0598 29 1 0.6244 -4.4161 -2.0763 30 1 -0.9303 -5.8232 -2.0313 31 1 -2.1858 -7.7304 -2.9486 32 1 -2.4235 -3.3351 -5.1685 33 1 0.7136 -4.2664 0.4303 34 1 2.8404 -2.5127 1.9263 35 1 2.1313 -4.1052 2.5279 36 1 3.0362 -5.2850 0.4728 37 1 3.7455 -3.6927 -0.1293 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067015421.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:36 Heat of formation + Delta-G solvation = -42.222832 kcal Electronic energy + Delta-G solvation = -26759.537534 eV Core-core repulsion = 22422.466959 eV Total energy + Delta-G solvation = -4337.070575 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.100 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.54275 -42.20650 -40.62960 -38.85554 -37.61702 -36.61977 -36.15921 -33.05102 -31.94083 -31.23700 -31.12505 -28.54412 -26.21855 -24.89406 -23.63817 -22.54605 -21.92894 -21.46822 -19.85972 -19.63598 -18.90679 -18.50496 -17.73220 -17.38994 -16.78294 -16.43053 -16.31632 -16.13722 -15.88203 -15.04012 -14.79000 -14.77600 -14.28773 -13.88477 -13.66509 -13.48723 -13.23798 -12.95331 -12.56126 -12.13890 -11.68034 -11.63347 -11.43678 -11.27074 -11.24595 -11.23013 -11.09317 -11.00219 -10.76146 -10.33174 -10.21413 -10.00020 -9.61511 -9.07922 -8.92671 -8.34393 -7.31378 -6.32655 -4.10720 -0.33475 0.44090 1.13919 1.21691 2.54256 2.82461 3.19287 3.26288 3.30059 3.43902 3.72895 3.95453 4.08345 4.19264 4.37453 4.48899 4.61994 4.64493 4.93034 4.96970 5.07568 5.19274 5.26393 5.30981 5.36603 5.39948 5.52310 5.60590 5.74496 5.79167 6.01684 6.19247 6.24615 6.49167 6.72867 6.88546 7.42311 7.52941 8.02700 8.77014 8.86598 9.37490 9.94347 10.76121 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.020617 B = 0.002934 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.760018 B = 9540.878186 C =10667.032506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.073 3.927 3 Si 0.917 3.083 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.351 4.351 8 H 0.083 0.917 9 N -0.418 5.418 10 C 0.479 3.521 11 O -0.509 6.509 12 C 0.038 3.962 13 O -0.260 6.260 14 C 0.227 3.773 15 C -0.225 4.225 16 C 0.016 3.984 17 C -0.137 4.137 18 N 0.041 4.959 19 O -0.168 6.168 20 O -0.161 6.161 21 C 0.213 3.787 22 F -0.099 7.099 23 C -0.197 4.197 24 C 0.063 3.937 25 C -0.168 4.168 26 C -0.205 4.205 27 H 0.268 0.732 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.160 0.840 31 H 0.165 0.835 32 H 0.170 0.830 33 H 0.101 0.899 34 H 0.109 0.891 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.609 -12.208 -2.203 12.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.138 4.138 3 Si 0.744 3.256 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.477 4.477 8 H 0.101 0.899 9 N -0.140 5.140 10 C 0.265 3.735 11 O -0.384 6.384 12 C -0.040 4.040 13 O -0.169 6.169 14 C 0.176 3.824 15 C -0.244 4.244 16 C -0.003 4.003 17 C -0.223 4.223 18 N 0.558 4.442 19 O -0.381 6.381 20 O -0.375 6.375 21 C 0.192 3.808 22 F -0.077 7.077 23 C -0.217 4.217 24 C -0.043 4.043 25 C -0.205 4.205 26 C -0.244 4.244 27 H 0.078 0.922 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.178 0.822 31 H 0.182 0.818 32 H 0.187 0.813 33 H 0.119 0.881 34 H 0.128 0.872 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.528 -10.757 -2.461 11.140 hybrid contribution 0.003 0.273 0.012 0.273 sum -1.525 -10.484 -2.449 10.874 Atomic orbital electron populations 1.69806 1.06663 1.27946 1.41860 1.25300 0.94911 0.99694 0.93927 0.86139 0.79271 0.81710 0.78525 1.20122 1.21106 1.19727 1.18888 0.94740 0.83446 1.50625 0.89918 1.42582 1.43816 1.07287 1.20342 1.19136 0.84216 0.87672 0.82511 1.90606 1.61574 1.33530 1.52700 1.23112 0.94429 1.01298 0.85193 1.86334 1.56457 1.31503 1.42557 1.19164 0.86616 0.86866 0.89752 1.21437 1.06628 0.91652 1.04696 1.20696 0.88821 1.00738 0.90019 1.21010 1.10334 0.86785 1.04137 1.43239 0.99316 1.01697 0.99918 1.94519 1.69445 1.12617 1.61558 1.94596 1.37933 1.90569 1.14445 1.16817 0.89760 0.90908 0.83327 1.91678 1.71936 1.95882 1.48183 1.20353 1.02024 1.00294 0.98993 1.21789 0.92801 0.91414 0.98299 1.23071 1.03809 1.02704 0.90961 1.23352 0.99234 0.98703 1.03152 0.92217 0.89749 0.89593 0.82240 0.81781 0.81297 0.88118 0.87236 0.89541 0.89549 0.88853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.13 11.74 55.50 0.65 -22.48 16 2 C 0.07 1.93 4.39 -17.46 -0.08 1.85 16 3 Si 0.92 20.67 29.59 -169.99 -5.03 15.64 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 7 C -0.35 -8.77 7.92 -14.93 -0.12 -8.89 16 8 H 0.08 2.00 7.26 -52.49 -0.38 1.61 16 9 N -0.42 -9.32 2.83 -107.72 -0.31 -9.62 16 10 C 0.48 10.94 7.04 -10.98 -0.08 10.86 16 11 O -0.51 -14.13 14.26 -14.36 -0.20 -14.34 16 12 C 0.04 0.61 3.84 36.01 0.14 0.74 16 13 O -0.26 -4.29 9.67 -39.32 -0.38 -4.67 16 14 C 0.23 2.85 6.68 -39.22 -0.26 2.59 16 15 C -0.22 -2.20 9.04 -39.42 -0.36 -2.56 16 16 C 0.02 0.16 9.55 -39.61 -0.38 -0.22 16 17 C -0.14 -1.66 6.86 -79.85 -0.55 -2.21 16 18 N 0.04 0.58 4.45 34.01 0.15 0.73 16 19 O -0.17 -2.33 18.44 -29.46 -0.54 -2.87 16 20 O -0.16 -2.44 17.42 -29.46 -0.51 -2.96 16 21 C 0.21 2.61 7.25 -39.44 -0.29 2.32 16 22 F -0.10 -1.29 15.47 2.25 0.03 -1.25 16 23 C -0.20 -2.35 9.97 -39.37 -0.39 -2.74 16 24 C 0.06 1.06 5.87 -67.93 -0.40 0.66 16 25 C -0.17 -2.59 9.80 -26.73 -0.26 -2.85 16 26 C -0.21 -2.92 10.36 -26.73 -0.28 -3.20 16 27 H 0.27 7.19 8.32 -40.82 -0.34 6.85 16 28 H 0.08 1.15 7.07 -51.93 -0.37 0.78 16 29 H 0.09 1.08 7.64 -51.93 -0.40 0.68 16 30 H 0.16 1.19 6.30 -52.49 -0.33 0.86 16 31 H 0.16 1.20 7.60 -52.49 -0.40 0.80 16 32 H 0.17 1.87 8.06 -52.49 -0.42 1.45 16 33 H 0.10 1.40 6.96 -51.93 -0.36 1.03 16 34 H 0.11 1.93 6.72 -51.93 -0.35 1.58 16 35 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 334.11 15.07 5.04 5.04 Total: -1.00 -32.11 334.11 -7.81 -39.92 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -3.41 Total: 0.50 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -3.29 Total: -3.65 kcal Atomic # 7 Polarization: -31.87 SS G_CDS: 0.50 Total: -31.37 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -1.64 Total: -24.83 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.03 Total: -1.25 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.64 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.11 -7.81 -39.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067015421.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.299 kcal (2) G-P(sol) polarization free energy of solvation -32.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds