Wall clock time and date at job start Tue Mar 31 2020 14:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86796 * 120.00413 * 2 1 4 4 H 1.48500 * 109.47398 * 270.00152 * 3 2 1 5 5 H 1.48502 * 109.46881 * 30.00254 * 3 2 1 6 6 H 1.48500 * 109.47249 * 150.00032 * 3 2 1 7 7 C 1.38958 * 119.99595 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99705 * 198.20920 * 7 2 1 9 9 N 1.37091 * 120.00135 * 18.20408 * 7 2 1 10 10 C 1.34778 * 119.99818 * 44.29031 * 9 7 2 11 11 O 1.21289 * 120.00295 * 359.97438 * 10 9 7 12 12 C 1.50707 * 119.99855 * 179.97438 * 10 9 7 13 13 O 1.42902 * 109.46867 * 180.02562 * 12 10 9 14 14 C 1.35896 * 116.99448 * 179.97438 * 13 12 10 15 15 C 1.38768 * 120.04904 * 0.25476 * 14 13 12 16 16 C 1.38135 * 119.99860 * 180.20634 * 15 14 13 17 17 C 1.38256 * 120.07565 * 359.51853 * 16 15 14 18 18 N 1.48021 * 119.95296 * 180.25025 * 17 16 15 19 19 O 1.21799 * 120.00159 * 0.02562 * 18 17 16 20 20 O 1.21796 * 119.99864 * 179.97438 * 18 17 16 21 21 C 1.38471 * 120.08489 * 0.27317 * 17 16 15 22 22 F 1.35105 * 119.99189 * 179.97438 * 21 17 16 23 23 C 1.38384 * 120.00975 * 359.95832 * 21 17 16 24 24 C 1.46495 * 120.00145 * 224.29361 * 9 7 2 25 25 C 1.53001 * 117.49830 * 3.22117 * 24 9 7 26 26 C 1.52992 * 60.00224 * 252.51150 * 25 24 9 27 27 H 0.97004 * 119.99605 * 354.93360 * 1 2 3 28 28 H 1.08997 * 109.46765 * 60.00199 * 12 10 9 29 29 H 1.09000 * 109.47043 * 299.99943 * 12 10 9 30 30 H 1.08001 * 119.99829 * 359.97438 * 15 14 13 31 31 H 1.07993 * 119.95828 * 179.78865 * 16 15 14 32 32 H 1.07993 * 120.04303 * 179.97438 * 23 21 17 33 33 H 1.09005 * 115.55366 * 148.93695 * 24 9 7 34 34 H 1.08997 * 117.50019 * 0.02562 * 25 24 9 35 35 H 1.09001 * 117.49651 * 145.01955 * 25 24 9 36 36 H 1.09005 * 117.50515 * 252.51073 * 26 25 24 37 37 H 1.09002 * 117.51835 * 107.48110 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4958 2.0464 -1.4000 5 1 1.4457 2.6526 0.7001 6 1 3.5458 1.4400 0.7000 7 6 2.0088 -1.2035 -0.0005 8 1 3.0483 -1.2270 0.2917 9 7 1.3748 -2.3608 -0.3719 10 6 0.5782 -2.3737 -1.4591 11 8 0.4219 -1.3613 -2.1085 12 6 -0.1184 -3.6461 -1.8677 13 8 -0.8980 -3.4066 -3.0411 14 6 -1.5942 -4.4595 -3.5447 15 6 -1.5324 -5.6965 -2.9189 16 6 -2.2371 -6.7671 -3.4341 17 6 -3.0124 -6.6054 -4.5674 18 7 -3.7708 -7.7531 -5.1139 19 8 -3.7119 -8.8388 -4.5651 20 8 -4.4544 -7.6114 -6.1120 21 6 -3.0799 -5.3714 -5.1920 22 9 -3.8377 -5.2156 -6.2996 23 6 -2.3715 -4.2977 -4.6816 24 6 1.5630 -3.5834 0.4128 25 6 2.4182 -3.4863 1.6777 26 6 2.9640 -4.1979 0.4382 27 1 -0.4850 0.8368 0.0742 28 1 -0.7699 -3.9792 -1.0598 29 1 0.6244 -4.4161 -2.0763 30 1 -0.9303 -5.8232 -2.0313 31 1 -2.1858 -7.7304 -2.9486 32 1 -2.4235 -3.3351 -5.1685 33 1 0.7136 -4.2664 0.4303 34 1 2.8404 -2.5127 1.9263 35 1 2.1313 -4.1052 2.5279 36 1 3.0362 -5.2850 0.4728 37 1 3.7455 -3.6927 -0.1293 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067015421.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:36 Heat of formation + Delta-G solvation = -60.550137 kcal Electronic energy + Delta-G solvation = -26760.332265 eV Core-core repulsion = 22422.466959 eV Total energy + Delta-G solvation = -4337.865306 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.100 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.51841 -43.24368 -41.68886 -40.32166 -38.71157 -37.68953 -37.62969 -34.81829 -33.10787 -32.73562 -32.03060 -29.91161 -27.34175 -26.49949 -24.58276 -23.60689 -23.09086 -22.81485 -21.39285 -20.61090 -19.96512 -19.59005 -18.76505 -18.72923 -17.95032 -17.76324 -17.51615 -17.33164 -16.94776 -16.56751 -16.26802 -15.66310 -15.51466 -15.43203 -14.90090 -14.57627 -14.40754 -14.13262 -13.76947 -13.61040 -13.01831 -12.87039 -12.85602 -12.76422 -12.55839 -12.33031 -12.31956 -12.31527 -12.16890 -12.06257 -11.68244 -11.21073 -10.77191 -10.48068 -10.06231 -10.05069 -9.04593 -8.26035 -6.04202 -1.33933 -0.39775 0.13219 0.23479 1.33900 1.43651 1.45937 1.49561 1.94914 2.14207 2.34159 2.52706 2.99802 3.11218 3.18808 3.32411 3.35126 3.52115 3.71247 3.91650 4.01478 4.08564 4.15810 4.21623 4.28902 4.43114 4.48337 4.52629 4.73696 4.88499 4.96423 5.06405 5.22359 5.31356 5.46100 5.53391 5.87212 6.16495 6.43479 6.96027 7.11753 7.60212 8.23251 8.82001 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.020617 B = 0.002934 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.760018 B = 9540.878186 C =10667.032506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.023 3.977 3 Si 0.966 3.034 4 H -0.293 1.293 5 H -0.282 1.282 6 H -0.252 1.252 7 C -0.353 4.353 8 H 0.083 0.917 9 N -0.435 5.435 10 C 0.460 3.540 11 O -0.577 6.577 12 C 0.052 3.948 13 O -0.296 6.296 14 C 0.215 3.785 15 C -0.203 4.203 16 C 0.032 3.968 17 C -0.142 4.142 18 N 0.041 4.959 19 O -0.146 6.146 20 O -0.210 6.210 21 C 0.204 3.796 22 F -0.110 7.110 23 C -0.199 4.199 24 C 0.038 3.962 25 C -0.174 4.174 26 C -0.177 4.177 27 H 0.260 0.740 28 H 0.115 0.885 29 H 0.129 0.871 30 H 0.196 0.804 31 H 0.198 0.802 32 H 0.167 0.833 33 H 0.141 0.859 34 H 0.077 0.923 35 H 0.119 0.881 36 H 0.131 0.869 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.548 -15.462 -0.489 15.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.184 4.184 3 Si 0.791 3.209 4 H -0.220 1.220 5 H -0.208 1.208 6 H -0.176 1.176 7 C -0.481 4.481 8 H 0.100 0.900 9 N -0.157 5.157 10 C 0.248 3.752 11 O -0.457 6.457 12 C -0.026 4.026 13 O -0.206 6.206 14 C 0.165 3.835 15 C -0.222 4.222 16 C 0.013 3.987 17 C -0.228 4.228 18 N 0.554 4.446 19 O -0.367 6.367 20 O -0.413 6.413 21 C 0.182 3.818 22 F -0.087 7.087 23 C -0.219 4.219 24 C -0.067 4.067 25 C -0.211 4.211 26 C -0.216 4.216 27 H 0.069 0.931 28 H 0.133 0.867 29 H 0.147 0.853 30 H 0.213 0.787 31 H 0.215 0.785 32 H 0.185 0.815 33 H 0.158 0.842 34 H 0.096 0.904 35 H 0.137 0.863 36 H 0.149 0.851 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.478 -14.011 -0.789 14.042 hybrid contribution -0.222 1.155 -0.467 1.266 sum -0.701 -12.857 -1.257 12.937 Atomic orbital electron populations 1.69898 1.07913 1.27768 1.44774 1.26024 0.95502 1.02592 0.94262 0.85374 0.79219 0.78827 0.77467 1.22007 1.20811 1.17582 1.19092 0.94947 0.84979 1.49064 0.89976 1.42846 1.43334 1.08318 1.21153 1.20279 0.83780 0.89333 0.81790 1.90561 1.63793 1.36640 1.54751 1.22917 0.95623 0.97828 0.86206 1.86272 1.57533 1.33680 1.43094 1.19279 0.86793 0.87256 0.90124 1.21744 1.05779 0.89834 1.04861 1.21075 0.87018 1.02044 0.88523 1.21252 1.10718 0.85869 1.04999 1.43476 0.99243 1.02109 0.99729 1.94481 1.68414 1.13051 1.60788 1.94616 1.39924 1.90947 1.15793 1.16887 0.90162 0.91306 0.83406 1.91651 1.72310 1.95970 1.48816 1.20360 1.02054 1.00255 0.99253 1.22207 0.95628 0.90094 0.98726 1.23124 1.03592 1.02191 0.92201 1.23371 0.96413 1.00827 1.00968 0.93081 0.86710 0.85331 0.78688 0.78472 0.81548 0.84185 0.90410 0.86284 0.85075 0.90900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -50.12 11.74 21.67 0.25 -49.86 16 2 C 0.02 1.24 4.39 84.93 0.37 1.61 16 3 Si 0.97 43.64 29.59 68.60 2.03 45.67 16 4 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.25 -10.38 7.11 99.48 0.71 -9.68 16 7 C -0.35 -17.88 7.92 84.04 0.67 -17.22 16 8 H 0.08 4.02 7.26 -2.91 -0.02 4.00 16 9 N -0.43 -18.99 2.83 -613.12 -1.74 -20.73 16 10 C 0.46 20.77 7.04 87.66 0.62 21.39 16 11 O -0.58 -33.11 14.26 15.98 0.23 -32.88 16 12 C 0.05 1.48 3.84 71.24 0.27 1.75 16 13 O -0.30 -9.30 9.67 -73.35 -0.71 -10.01 16 14 C 0.21 4.89 6.68 22.50 0.15 5.04 16 15 C -0.20 -2.98 9.04 22.37 0.20 -2.78 16 16 C 0.03 0.47 9.55 22.25 0.21 0.68 16 17 C -0.14 -3.13 6.86 36.43 0.25 -2.88 16 18 N 0.04 1.08 4.45 -46.32 -0.21 0.87 16 19 O -0.15 -3.64 18.44 18.89 0.35 -3.29 16 20 O -0.21 -6.40 17.42 18.89 0.33 -6.07 16 21 C 0.20 4.83 7.25 22.36 0.16 4.99 16 22 F -0.11 -2.92 15.47 44.97 0.70 -2.22 16 23 C -0.20 -4.63 9.97 22.41 0.22 -4.41 16 24 C 0.04 1.13 5.87 44.99 0.26 1.40 16 25 C -0.17 -4.82 9.80 30.59 0.30 -4.53 16 26 C -0.18 -4.28 10.36 30.59 0.32 -3.97 16 27 H 0.26 14.63 8.32 -92.71 -0.77 13.85 16 28 H 0.12 2.56 7.07 -2.39 -0.02 2.54 16 29 H 0.13 2.53 7.64 -2.39 -0.02 2.51 16 30 H 0.20 1.48 6.30 -2.91 -0.02 1.47 16 31 H 0.20 1.64 7.60 -2.91 -0.02 1.62 16 32 H 0.17 3.83 8.06 -2.91 -0.02 3.81 16 33 H 0.14 3.07 6.96 -2.38 -0.02 3.05 16 34 H 0.08 2.67 6.72 -2.39 -0.02 2.66 16 35 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 36 H 0.13 2.06 8.14 -2.38 -0.02 2.04 16 37 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -76.40 334.11 6.38 -70.01 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: 1.14 Total: 7.43 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: 4.01 Total: 1.09 kcal Atomic # 7 Polarization: -68.03 SS G_CDS: -1.69 Total: -69.72 kcal Atomic # 8 Polarization: -52.46 SS G_CDS: 0.20 Total: -52.26 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.70 Total: -2.22 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -76.40 6.38 -70.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067015421.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.465 kcal (2) G-P(sol) polarization free energy of solvation -76.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds