Wall clock time and date at job start Tue Mar 31 2020 14:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53002 * 109.46916 * 166.07841 * 3 2 1 5 5 N 1.46897 * 109.47296 * 179.44597 * 4 3 2 6 6 C 1.46896 * 110.99738 * 297.51409 * 5 4 3 7 7 C 1.50699 * 109.47142 * 292.82307 * 6 5 4 8 8 H 1.08004 * 120.00175 * 354.99110 * 7 6 5 9 9 C 1.37876 * 120.00060 * 174.99539 * 7 6 5 10 10 N 1.31516 * 119.99885 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00044 * 180.02562 * 9 7 6 12 12 H 1.48491 * 109.47623 * 89.99892 * 11 9 7 13 13 H 1.48504 * 109.46909 * 209.99584 * 11 9 7 14 14 H 1.48500 * 109.47277 * 329.99265 * 11 9 7 15 15 C 1.46905 * 110.99671 * 61.46807 * 5 4 3 16 16 C 1.53000 * 109.47133 * 66.04833 * 15 5 4 17 17 S 1.81402 * 109.46904 * 179.97438 * 16 15 5 18 18 C 1.76199 * 103.00183 * 179.97438 * 17 16 15 19 19 C 1.38962 * 120.06475 * 0.27431 * 18 17 16 20 20 C 1.38084 * 119.93400 * 180.27298 * 19 18 17 21 21 C 1.38400 * 120.06450 * 359.45389 * 20 19 18 22 22 Cl 1.73591 * 119.93402 * 180.29469 * 21 20 19 23 23 C 1.38400 * 120.13471 * 0.27344 * 21 20 19 24 24 C 1.38083 * 120.06651 * 359.97438 * 23 21 20 25 25 H 1.08995 * 109.47459 * 46.07542 * 3 2 1 26 26 H 1.09006 * 109.47054 * 286.06984 * 3 2 1 27 27 H 1.08998 * 109.47267 * 59.43977 * 4 3 2 28 28 H 1.09008 * 109.46619 * 299.44320 * 4 3 2 29 29 H 1.08995 * 109.47559 * 52.83050 * 6 5 4 30 30 H 1.09005 * 109.47014 * 172.82489 * 6 5 4 31 31 H 0.96999 * 119.99984 * 180.02562 * 10 9 7 32 32 H 1.08997 * 109.47235 * 306.04039 * 15 5 4 33 33 H 1.08997 * 109.46589 * 186.04530 * 15 5 4 34 34 H 1.08995 * 109.47030 * 59.99803 * 16 15 5 35 35 H 1.08997 * 109.47136 * 299.99363 * 16 15 5 36 36 H 1.08008 * 120.03588 * 0.02562 * 19 18 17 37 37 H 1.07998 * 119.97072 * 179.72384 * 20 19 18 38 38 H 1.07993 * 119.96971 * 180.02562 * 23 21 20 39 39 H 1.08002 * 120.03832 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.4011 -0.3471 5 7 4.5863 1.4050 -0.3341 6 6 5.1017 1.0885 1.0045 7 6 4.7558 2.2069 1.9535 8 1 4.2797 3.1024 1.5821 9 6 5.0470 2.0870 3.2958 10 7 5.6263 0.9963 3.7481 11 14 4.6176 3.4730 4.4722 12 1 3.2475 3.2634 5.0050 13 1 5.5886 3.4874 5.5956 14 1 4.6754 4.7699 3.7512 15 6 5.1241 0.4775 -1.3383 16 6 4.7711 0.9816 -2.7391 17 16 5.4358 -0.1634 -3.9791 18 6 4.9379 0.5691 -5.5023 19 6 4.2153 1.7561 -5.5006 20 6 3.8216 2.3248 -6.6957 21 6 4.1558 1.7198 -7.8948 22 17 3.6657 2.4418 -9.3955 23 6 4.8802 0.5406 -7.8999 24 6 5.2724 -0.0356 -6.7079 25 1 2.9717 -0.7120 -0.7401 26 1 2.9715 -0.2837 0.9876 27 1 2.7455 2.1153 0.3875 28 1 2.7620 1.6814 -1.3387 29 1 4.6517 0.1605 1.3571 30 1 6.1846 0.9726 0.9589 31 1 5.8309 0.9118 4.6925 32 1 4.6912 -0.5115 -1.1882 33 1 6.2076 0.4191 -1.2355 34 1 5.2041 1.9706 -2.8891 35 1 3.6875 1.0400 -2.8419 36 1 3.9584 2.2313 -4.5653 37 1 3.2562 3.2449 -6.6949 38 1 5.1399 0.0710 -8.8371 39 1 5.8381 -0.9556 -6.7124 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072947794.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:32 Heat of formation + Delta-G solvation = 31.239932 kcal Electronic energy + Delta-G solvation = -21318.935057 eV Core-core repulsion = 17991.972407 eV Total energy + Delta-G solvation = -3326.962649 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.07230 -39.50053 -37.40744 -37.38962 -34.80343 -32.87739 -32.06528 -31.78034 -31.24948 -28.13447 -25.86085 -24.50493 -23.77377 -23.35862 -21.14663 -18.97047 -18.69065 -18.20494 -17.66564 -17.06233 -16.47010 -16.43356 -16.26838 -15.72465 -15.37643 -15.13089 -14.76944 -14.68720 -14.46674 -14.46068 -14.32809 -13.62964 -13.48296 -13.22052 -12.98752 -12.89624 -12.83834 -12.74718 -12.63260 -12.40340 -12.35223 -12.22784 -11.89965 -11.81697 -11.42206 -11.20038 -11.15676 -10.52848 -10.45053 -10.10992 -8.97873 -8.35672 -8.13243 -6.19684 -0.02084 0.25482 0.45495 1.15712 1.44339 1.44448 1.47447 1.55878 1.75879 1.79574 2.45260 2.52017 2.99522 3.21707 3.46911 3.75507 3.86846 3.89694 3.99656 4.18720 4.23690 4.27249 4.35601 4.44392 4.53434 4.66965 4.78286 4.85915 4.91424 5.00738 5.01752 5.18456 5.19059 5.21447 5.40390 5.42727 5.66830 5.74258 6.13682 6.30565 6.57539 6.64687 6.96688 7.49371 8.96356 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.016547 B = 0.002434 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.706320 B =11503.239808 C =11814.382271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C 0.245 3.755 3 C -0.063 4.063 4 C 0.070 3.930 5 N -0.528 5.528 6 C 0.199 3.801 7 C -0.514 4.514 8 H 0.062 0.938 9 C 0.010 3.990 10 N -0.929 5.929 11 Si 0.950 3.050 12 H -0.280 1.280 13 H -0.288 1.288 14 H -0.267 1.267 15 C 0.065 3.935 16 C -0.096 4.096 17 S -0.110 6.110 18 C -0.087 4.087 19 C -0.130 4.130 20 C -0.095 4.095 21 C -0.054 4.054 22 Cl -0.071 7.071 23 C -0.092 4.092 24 C -0.096 4.096 25 H 0.131 0.869 26 H 0.106 0.894 27 H 0.071 0.929 28 H 0.094 0.906 29 H -0.002 1.002 30 H 0.007 0.993 31 H 0.262 0.738 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.142 0.858 37 H 0.148 0.852 38 H 0.156 0.844 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.272 -1.573 -23.119 23.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.173 5.173 2 C -0.072 4.072 3 C -0.105 4.105 4 C -0.060 4.060 5 N -0.251 5.251 6 C 0.073 3.927 7 C -0.553 4.553 8 H 0.080 0.920 9 C -0.189 4.189 10 N -0.569 5.569 11 Si 0.777 3.223 12 H -0.206 1.206 13 H -0.214 1.214 14 H -0.191 1.191 15 C -0.064 4.064 16 C -0.244 4.244 17 S 0.135 5.865 18 C -0.201 4.201 19 C -0.154 4.154 20 C -0.115 4.115 21 C -0.083 4.083 22 Cl -0.042 7.042 23 C -0.112 4.112 24 C -0.120 4.120 25 H 0.148 0.852 26 H 0.124 0.876 27 H 0.090 0.910 28 H 0.112 0.888 29 H 0.016 0.984 30 H 0.025 0.975 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.116 0.884 35 H 0.120 0.880 36 H 0.160 0.840 37 H 0.165 0.835 38 H 0.174 0.826 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -1.114 -2.129 -22.864 22.990 hybrid contribution -0.603 1.026 0.985 1.545 sum -1.717 -1.103 -21.880 21.975 Atomic orbital electron populations 1.81179 1.14251 1.10712 1.11139 1.29361 0.95217 0.91415 0.91221 1.20185 0.80551 1.03320 1.06443 1.22102 0.87875 0.93381 1.02622 1.62235 1.06141 1.50174 1.06540 1.19531 0.94189 0.94970 0.83968 1.21450 1.38531 1.03198 0.92110 0.91952 1.25656 0.95479 0.97731 1.00026 1.70032 1.43563 1.28300 1.15050 0.85667 0.77674 0.80306 0.78692 1.20560 1.21388 1.19137 1.21780 1.00829 0.94709 0.89103 1.23689 1.04650 1.01169 0.94890 1.85547 1.70494 1.34849 0.95638 1.22040 1.01701 0.98564 0.97746 1.21375 0.99495 0.95277 0.99234 1.21157 0.99489 1.00593 0.90250 1.21076 1.02982 0.96921 0.87367 1.98372 1.90458 1.83060 1.32313 1.21202 0.96736 0.93822 0.99440 1.20948 1.00576 1.00823 0.89644 0.85174 0.87635 0.91020 0.88793 0.98397 0.97513 0.92950 0.92730 0.90897 0.88383 0.88039 0.83989 0.83452 0.82608 0.83192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -16.87 18.54 20.01 0.37 -16.49 16 2 C 0.24 7.19 15.43 89.44 1.38 8.57 16 3 C -0.06 -1.65 5.05 28.79 0.15 -1.51 16 4 C 0.07 1.99 4.91 86.30 0.42 2.42 16 5 N -0.53 -17.29 4.69 -900.79 -4.23 -21.52 16 6 C 0.20 8.69 4.54 85.56 0.39 9.08 16 7 C -0.51 -25.57 8.39 25.60 0.21 -25.35 16 8 H 0.06 3.07 7.39 -2.91 -0.02 3.05 16 9 C 0.01 0.50 5.46 84.65 0.46 0.96 16 10 N -0.93 -51.35 13.29 21.45 0.28 -51.06 16 11 Si 0.95 41.81 29.54 68.60 2.03 43.84 16 12 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 13 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 14 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 15 C 0.06 1.67 4.75 86.30 0.41 2.08 16 16 C -0.10 -1.95 4.26 71.98 0.31 -1.64 16 17 S -0.11 -2.19 21.92 -56.49 -1.24 -3.43 16 18 C -0.09 -1.64 6.11 22.62 0.14 -1.50 16 19 C -0.13 -2.32 9.36 22.41 0.21 -2.11 16 20 C -0.09 -1.58 9.82 22.27 0.22 -1.36 16 21 C -0.05 -0.90 6.32 22.35 0.14 -0.75 16 22 Cl -0.07 -1.11 28.95 -2.72 -0.08 -1.19 16 23 C -0.09 -1.37 9.82 22.27 0.22 -1.15 16 24 C -0.10 -1.56 9.79 22.41 0.22 -1.34 16 25 H 0.13 2.65 6.34 -2.39 -0.02 2.63 16 26 H 0.11 3.26 6.28 -2.38 -0.01 3.24 16 27 H 0.07 2.41 6.98 -2.39 -0.02 2.39 16 28 H 0.09 2.12 6.40 -2.38 -0.02 2.10 16 29 H 0.00 -0.07 6.02 -2.39 -0.01 -0.09 16 30 H 0.01 0.33 7.91 -2.38 -0.02 0.31 16 31 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 32 H 0.05 1.29 6.06 -2.39 -0.01 1.27 16 33 H 0.07 2.05 7.92 -2.39 -0.02 2.03 16 34 H 0.10 2.05 7.74 -2.39 -0.02 2.03 16 35 H 0.10 1.82 6.14 -2.39 -0.01 1.81 16 36 H 0.14 2.30 5.88 -2.91 -0.02 2.29 16 37 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 38 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 39 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 Total: -1.00 -58.92 355.78 3.09 -55.82 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: 1.08 Total: 7.64 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: 4.88 Total: -13.60 kcal Atomic # 7 Polarization: -85.51 SS G_CDS: -3.57 Total: -89.08 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Atomic # 16 Polarization: -2.19 SS G_CDS: -1.24 Total: -3.43 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -0.08 Total: -1.19 kcal Total: -58.92 3.09 -55.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072947794.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.064 kcal (2) G-P(sol) polarization free energy of solvation -58.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds