Wall clock time and date at job start Tue Mar 31 2020 13:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35989 * 117.00057 * 2 1 4 4 C 1.39126 * 119.84407 * 0.31465 * 3 2 1 5 5 C 1.37660 * 120.44389 * 180.34168 * 4 3 2 6 6 C 1.39705 * 119.84899 * 359.37848 * 5 4 3 7 7 N 1.36034 * 133.30458 * 180.28384 * 6 5 4 8 8 C 1.30982 * 109.60961 * 179.97438 * 7 6 5 9 9 S 1.76202 * 125.07231 * 180.02562 * 8 7 6 10 10 C 1.81002 * 100.00457 * 359.97438 * 9 8 7 11 11 C 1.52992 * 109.47285 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.47354 * 180.02562 * 11 10 9 13 13 S 1.80996 * 109.47405 * 179.97438 * 12 11 10 14 14 C 1.76203 * 99.99848 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00223 * 0.02562 * 14 13 12 16 16 C 1.38810 * 119.99817 * 179.97438 * 14 13 12 17 17 N 1.31625 * 119.99922 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 119.99894 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47350 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47200 * 119.99978 * 18 16 14 21 21 H 1.48506 * 109.46839 * 240.00081 * 18 16 14 22 22 N 1.36701 * 109.84605 * 359.97438 * 8 7 6 23 23 H 0.97003 * 126.37346 * 179.97438 * 22 8 7 24 24 C 1.38525 * 107.24546 * 0.02562 * 22 8 7 25 25 C 1.38380 * 119.84171 * 180.02562 * 3 2 1 26 26 H 1.08997 * 109.46894 * 59.99922 * 1 2 3 27 27 H 1.08996 * 109.46953 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46800 * 300.00248 * 1 2 3 29 29 H 1.08001 * 119.77524 * 0.02562 * 4 3 2 30 30 H 1.08002 * 120.07786 * 179.65938 * 5 4 3 31 31 H 1.09006 * 109.46477 * 299.99760 * 10 9 8 32 32 H 1.09000 * 109.47048 * 59.99308 * 10 9 8 33 33 H 1.09002 * 109.47140 * 300.00091 * 11 10 9 34 34 H 1.09000 * 109.47644 * 59.99671 * 11 10 9 35 35 H 1.09010 * 109.46906 * 299.99853 * 12 11 10 36 36 H 1.09000 * 109.47023 * 59.99280 * 12 11 10 37 37 H 0.97000 * 120.00124 * 179.97438 * 17 16 14 38 38 H 1.08002 * 120.09850 * 359.94951 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2855 2.3764 0.0066 5 6 1.8976 3.6094 -0.0004 6 6 3.2921 3.6935 -0.0011 7 7 4.1638 4.7378 -0.0022 8 6 5.3927 4.2846 -0.0019 9 16 6.8417 5.2873 -0.0024 10 6 6.0859 6.9320 -0.0040 11 6 7.1837 7.9976 -0.0053 12 6 6.5449 9.3879 -0.0061 13 16 7.8435 10.6486 -0.0068 14 6 6.8543 12.1068 -0.0084 15 1 5.7771 12.0286 -0.0082 16 6 7.4595 13.3560 -0.0088 17 7 8.7723 13.4513 -0.0085 18 14 6.4108 14.9018 -0.0097 19 1 4.9743 14.5255 -0.0105 20 1 6.7119 15.7049 1.2025 21 1 6.7126 15.7039 -1.2225 22 7 5.3832 2.9176 0.0000 23 1 6.1603 2.3369 0.0002 24 6 4.0574 2.5162 0.0003 25 6 3.4285 1.2803 -0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.2074 2.3127 0.0122 30 1 1.3011 4.5098 -0.0007 31 1 5.4676 7.0467 -0.8944 32 1 5.4670 7.0483 0.8856 33 1 7.8024 7.8830 0.8847 34 1 7.8022 7.8811 -0.8952 35 1 5.9259 9.5028 -0.8960 36 1 5.9266 9.5041 0.8840 37 1 9.1952 14.3242 -0.0091 38 1 4.0158 0.3739 -0.0001 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075075280.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:01 Heat of formation + Delta-G solvation = 16.691211 kcal Electronic energy + Delta-G solvation = -20550.872981 eV Core-core repulsion = 17225.323158 eV Total energy + Delta-G solvation = -3325.549823 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.19632 -39.81582 -36.25785 -34.44326 -33.35225 -32.43692 -30.57407 -29.33692 -27.50880 -27.00552 -25.48975 -23.93053 -22.47344 -21.77677 -21.34360 -18.94310 -18.29881 -17.49308 -17.16901 -16.20262 -16.14015 -16.00699 -15.61809 -15.11058 -14.81541 -14.65530 -14.23753 -14.06104 -13.83665 -13.26148 -13.10601 -12.78040 -12.73244 -12.48690 -11.87718 -11.80170 -11.53037 -11.32178 -11.09518 -10.96603 -10.89961 -10.66819 -10.57811 -10.56533 -10.28164 -9.59195 -9.07596 -9.05033 -8.51943 -8.33662 -7.53005 -6.55075 -6.23987 -3.94587 0.59738 0.89191 1.13149 1.96469 2.36984 2.55209 3.14303 3.21257 3.22702 3.30387 3.50591 3.55079 4.13560 4.20928 4.48657 4.61267 4.74019 4.78327 4.83151 5.04819 5.06116 5.07044 5.12619 5.12800 5.16492 5.37421 5.57003 5.58999 5.74950 5.78850 5.94237 5.96966 6.04370 6.20532 6.32494 6.43360 6.65104 6.85488 6.95236 7.45029 7.60657 8.36362 9.22741 10.84271 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.026745 B = 0.001886 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.674683 B =14842.683723 C =15858.305012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.317 6.317 3 C 0.142 3.858 4 C -0.205 4.205 5 C -0.023 4.023 6 C 0.026 3.974 7 N -0.483 5.483 8 C 0.266 3.734 9 S -0.014 6.014 10 C -0.087 4.087 11 C -0.087 4.087 12 C -0.108 4.108 13 S -0.129 6.129 14 C -0.516 4.516 15 H 0.074 0.926 16 C 0.071 3.929 17 N -0.869 5.869 18 Si 0.919 3.081 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.280 1.280 22 N -0.586 5.586 23 H 0.427 0.573 24 C 0.093 3.907 25 C -0.153 4.153 26 H 0.057 0.943 27 H 0.100 0.900 28 H 0.057 0.943 29 H 0.136 0.864 30 H 0.136 0.864 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.267 0.733 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.978 -27.509 0.024 30.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.230 6.230 3 C 0.095 3.905 4 C -0.226 4.226 5 C -0.043 4.043 6 C -0.093 4.093 7 N -0.208 5.208 8 C -0.109 4.109 9 S 0.218 5.782 10 C -0.238 4.238 11 C -0.127 4.127 12 C -0.259 4.259 13 S 0.099 5.901 14 C -0.664 4.664 15 H 0.092 0.908 16 C -0.138 4.138 17 N -0.505 5.505 18 Si 0.745 3.255 19 H -0.196 1.196 20 H -0.206 1.206 21 H -0.206 1.206 22 N -0.201 5.201 23 H 0.267 0.733 24 C -0.019 4.019 25 C -0.175 4.175 26 H 0.076 0.924 27 H 0.118 0.882 28 H 0.076 0.924 29 H 0.154 0.846 30 H 0.154 0.846 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.739 -27.102 0.025 29.152 hybrid contribution -2.887 0.424 -0.001 2.918 sum -13.626 -26.678 0.024 29.956 Atomic orbital electron populations 1.23084 0.78066 1.04025 1.01596 1.86058 1.21556 1.26524 1.88861 1.18380 0.91100 0.84234 0.96818 1.21023 1.00188 0.91447 1.09894 1.20098 0.90672 0.97645 0.95931 1.19017 0.94048 0.88297 1.07950 1.71034 0.97126 1.29467 1.23141 1.25512 0.99058 0.83994 1.02309 1.85730 0.99872 1.00511 1.92048 1.23749 1.01973 0.90497 1.07564 1.21118 0.96072 0.91585 1.03952 1.23237 1.02792 0.96384 1.03459 1.84632 1.10412 0.98173 1.96888 1.22737 0.94304 0.90942 1.58454 0.90768 1.25018 0.95346 0.98859 0.94565 1.70026 1.08353 1.24837 1.47291 0.86104 0.80008 0.81485 0.77883 1.19564 1.20564 1.20567 1.42870 1.06737 1.06279 1.64226 0.73341 1.18404 0.83957 0.95523 1.04064 1.18748 0.91581 0.94959 1.12247 0.92441 0.88179 0.92449 0.84594 0.84624 0.88365 0.88359 0.90428 0.90421 0.91659 0.91661 0.92332 0.85074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.81 101.05 0.99 1.11 16 2 O -0.32 -2.67 10.49 -19.71 -0.21 -2.88 16 3 C 0.14 1.35 6.68 -39.20 -0.26 1.09 16 4 C -0.20 -1.79 9.01 -39.46 -0.36 -2.14 16 5 C -0.02 -0.25 10.09 -39.24 -0.40 -0.64 16 6 C 0.03 0.35 7.22 -84.63 -0.61 -0.26 16 7 N -0.48 -7.00 10.57 -10.88 -0.11 -7.12 16 8 C 0.27 3.39 8.21 -88.44 -0.73 2.66 16 9 S -0.01 -0.16 22.31 -107.50 -2.40 -2.56 16 10 C -0.09 -1.17 5.15 37.15 0.19 -0.98 16 11 C -0.09 -1.35 5.22 -26.74 -0.14 -1.49 16 12 C -0.11 -2.12 5.67 37.16 0.21 -1.91 16 13 S -0.13 -3.32 21.44 -107.50 -2.30 -5.63 16 14 C -0.52 -14.70 9.50 30.94 0.29 -14.40 16 15 H 0.07 2.05 7.80 -52.49 -0.41 1.64 16 16 C 0.07 2.01 5.49 -17.43 -0.10 1.92 16 17 N -0.87 -25.82 13.22 55.49 0.73 -25.09 16 18 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 19 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 N -0.59 -6.15 6.28 -10.57 -0.07 -6.21 16 23 H 0.43 3.07 8.96 -40.82 -0.37 2.71 16 24 C 0.09 1.07 7.29 -83.85 -0.61 0.46 16 25 C -0.15 -1.52 10.00 -39.37 -0.39 -1.92 16 26 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 27 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.21 7.64 -51.93 -0.40 -0.19 16 29 H 0.14 0.80 6.26 -52.49 -0.33 0.47 16 30 H 0.14 1.25 8.06 -52.49 -0.42 0.82 16 31 H 0.10 1.34 8.14 -51.91 -0.42 0.92 16 32 H 0.10 1.34 8.14 -51.92 -0.42 0.92 16 33 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.06 1.27 8.14 -51.91 -0.42 0.84 16 36 H 0.06 1.27 8.14 -51.92 -0.42 0.84 16 37 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 354.27 15.07 5.34 5.34 Total: -1.00 -33.41 354.27 -10.78 -44.20 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -4.84 Total: -0.01 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: -1.90 Total: -16.50 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.55 Total: -38.42 kcal Atomic # 8 Polarization: -2.67 SS G_CDS: -0.21 Total: -2.88 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -3.48 SS G_CDS: -4.70 Total: -8.19 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.41 -10.78 -44.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075075280.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.886 kcal (2) G-P(sol) polarization free energy of solvation -33.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds