Wall clock time and date at job start Tue Mar 31 2020 14:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86793 * 119.99863 * 2 1 4 4 H 1.48507 * 109.46988 * 269.99913 * 3 2 1 5 5 H 1.48496 * 109.47234 * 29.99846 * 3 2 1 6 6 H 1.48498 * 109.47207 * 150.00264 * 3 2 1 7 7 C 1.39950 * 119.99774 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99325 * 197.86405 * 7 2 1 9 9 C 1.41386 * 120.00280 * 17.86142 * 7 2 1 10 10 C 1.40720 * 120.24525 * 24.40117 * 9 7 2 11 11 C 1.37623 * 119.74445 * 179.97438 * 10 9 7 12 12 C 1.38633 * 120.24875 * 359.97438 * 11 10 9 13 13 S 1.76199 * 119.74749 * 180.02562 * 12 11 10 14 14 O 1.42096 * 106.40326 * 336.46657 * 13 12 11 15 15 O 1.42095 * 106.40360 * 203.54149 * 13 12 11 16 16 N 1.65604 * 107.21647 * 90.00306 * 13 12 11 17 17 C 1.47424 * 125.64919 * 270.03957 * 16 13 12 18 18 C 1.54907 * 104.83275 * 204.09088 * 17 16 13 19 19 C 1.55157 * 101.58382 * 322.99510 * 18 17 16 20 20 C 1.47020 * 125.64591 * 89.99639 * 16 13 12 21 21 H 1.08990 * 109.88675 * 298.39432 * 20 16 13 22 22 C 1.50703 * 109.88080 * 59.56520 * 20 16 13 23 23 N 1.34783 * 119.99833 * 180.02562 * 22 20 16 24 24 O 1.21282 * 120.00130 * 359.97438 * 22 20 16 25 25 C 1.38635 * 120.50239 * 0.28153 * 12 11 10 26 26 C 1.37624 * 120.24644 * 359.44444 * 25 12 11 27 27 H 0.96996 * 120.00006 * 0.02562 * 1 2 3 28 28 H 1.07995 * 120.12475 * 359.95133 * 10 9 7 29 29 H 1.07995 * 119.87038 * 179.97438 * 11 10 9 30 30 H 1.09000 * 110.36643 * 322.93641 * 17 16 13 31 31 H 1.09002 * 110.36392 * 85.14554 * 17 16 13 32 32 H 1.08999 * 110.99980 * 81.06736 * 18 17 16 33 33 H 1.09001 * 111.00252 * 204.91590 * 18 17 16 34 34 H 1.09007 * 110.71582 * 277.13778 * 19 18 17 35 35 H 1.08992 * 110.72081 * 153.86524 * 19 18 17 36 36 H 0.96997 * 120.00075 * 359.97438 * 23 22 20 37 37 H 0.97004 * 119.99473 * 179.97438 * 23 22 20 38 38 H 1.07999 * 119.87688 * 179.70127 * 25 12 11 39 39 H 1.07999 * 120.12614 * 180.27424 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0464 -1.4002 5 1 1.4396 2.6526 0.7000 6 1 3.5398 1.4402 0.7000 7 6 2.0080 -1.2120 -0.0005 8 1 3.0489 -1.2346 0.2864 9 6 1.3521 -2.4068 -0.3766 10 6 0.2211 -2.3616 -1.2127 11 6 -0.4089 -3.5310 -1.5727 12 6 0.0669 -4.7501 -1.1155 13 16 -0.7496 -6.2392 -1.5852 14 8 -2.0823 -5.8775 -1.9201 15 8 -0.4323 -7.2021 -0.5896 16 7 -0.0416 -6.7652 -2.9869 17 6 -0.4646 -6.4026 -4.3518 18 6 0.0444 -7.5610 -5.2455 19 6 1.4021 -7.8986 -4.5748 20 6 1.1135 -7.6704 -3.0761 21 1 1.9797 -7.2144 -2.5970 22 6 0.7883 -8.9832 -2.4112 23 7 1.7093 -9.9666 -2.3750 24 8 -0.3018 -9.1545 -1.9080 25 6 1.1772 -4.8062 -0.2871 26 6 1.8264 -3.6500 0.0812 27 1 -0.4850 0.8400 -0.0004 28 1 -0.1512 -1.4129 -1.5700 29 1 -1.2773 -3.4986 -2.2139 30 1 -1.5509 -6.3308 -4.4058 31 1 -0.0074 -5.4600 -4.6528 32 1 -0.6342 -8.4130 -5.2046 33 1 0.1884 -7.2272 -6.2732 34 1 2.1833 -7.2233 -4.9242 35 1 1.6766 -8.9368 -4.7610 36 1 2.5813 -9.8294 -2.7771 37 1 1.5001 -10.8114 -1.9467 38 1 1.5364 -5.7611 0.0671 39 1 2.6938 -3.6963 0.7230 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081298499.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:11 Heat of formation + Delta-G solvation = -93.202339 kcal Electronic energy + Delta-G solvation = -25822.154929 eV Core-core repulsion = 22049.086893 eV Total energy + Delta-G solvation = -3773.068036 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.95330 -37.55301 -37.30778 -36.26172 -34.89591 -34.02251 -33.65832 -30.76152 -30.22507 -29.46643 -29.34029 -25.78716 -23.42502 -21.76471 -21.47042 -21.08841 -20.43597 -18.63770 -17.65675 -17.60222 -17.05854 -16.69090 -16.21413 -15.56476 -15.38888 -14.78386 -14.22753 -14.11053 -13.66797 -13.57531 -13.48624 -13.20939 -13.09241 -12.91839 -12.38730 -12.16429 -11.71450 -11.50056 -11.41012 -11.36831 -11.25779 -11.18960 -11.15433 -11.07059 -10.97680 -10.86329 -10.38163 -9.94508 -9.72314 -9.58273 -9.53568 -9.42377 -8.66998 -7.94035 -7.69028 -7.12525 -4.78736 1.25490 2.28823 2.78529 2.88190 2.91145 2.93007 2.93982 3.43370 3.66638 3.75736 4.25512 4.37697 4.51261 4.72401 4.86700 4.96565 5.23249 5.25819 5.39502 5.46957 5.54923 5.70411 5.75026 5.82250 6.07319 6.10620 6.12849 6.27246 6.53537 6.69366 6.75435 6.84486 7.00159 7.07177 7.35158 7.36180 7.43947 7.65722 7.78041 7.98132 8.33291 8.38536 8.52422 8.66622 9.79115 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.022205 B = 0.003575 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.694492 B = 7830.909713 C = 7844.695770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.072 3.928 3 Si 0.918 3.082 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.437 4.437 8 H 0.087 0.913 9 C 0.139 3.861 10 C -0.184 4.184 11 C -0.015 4.015 12 C -0.792 4.792 13 S 2.708 3.292 14 O -0.979 6.979 15 O -0.958 6.958 16 N -0.996 5.996 17 C 0.116 3.884 18 C -0.129 4.129 19 C -0.119 4.119 20 C 0.135 3.865 21 H 0.102 0.898 22 C 0.499 3.501 23 N -0.860 5.860 24 O -0.505 6.505 25 C 0.001 3.999 26 C -0.239 4.239 27 H 0.289 0.711 28 H 0.122 0.878 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.398 0.602 37 H 0.400 0.600 38 H 0.102 0.898 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.450 -10.305 -10.745 16.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.150 4.150 3 Si 0.741 3.259 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.465 4.465 8 H 0.105 0.895 9 C 0.136 3.864 10 C -0.204 4.204 11 C -0.036 4.036 12 C -0.887 4.887 13 S 2.808 3.192 14 O -0.970 6.970 15 O -0.948 6.948 16 N -0.830 5.830 17 C -0.009 4.009 18 C -0.168 4.168 19 C -0.158 4.158 20 C 0.023 3.977 21 H 0.119 0.881 22 C 0.281 3.719 23 N -0.425 5.425 24 O -0.377 6.377 25 C -0.019 4.019 26 C -0.260 4.260 27 H 0.101 0.899 28 H 0.140 0.860 29 H 0.120 0.880 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.226 0.774 37 H 0.231 0.769 38 H 0.120 0.880 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.667 -10.478 -9.946 15.182 hybrid contribution 1.227 1.096 0.135 1.650 sum 5.894 -9.382 -9.811 14.800 Atomic orbital electron populations 1.69830 1.07928 1.30396 1.30565 1.26144 0.94877 1.02122 0.91884 0.86139 0.80488 0.79537 0.79727 1.18812 1.19864 1.18215 1.19934 0.98531 0.91229 1.36760 0.89458 1.17847 0.90101 0.92117 0.86355 1.21347 0.99815 0.96884 1.02343 1.20267 0.95850 0.91809 0.95638 1.29440 1.18584 1.15966 1.24717 1.01039 0.73175 0.73634 0.71340 1.93458 1.34440 1.85195 1.83904 1.93521 1.84820 1.60303 1.56204 1.58889 1.44161 1.58830 1.21091 1.22010 1.00724 0.97611 0.80596 1.22784 0.96199 0.98840 0.98997 1.22658 0.98899 1.02693 0.91576 1.21136 0.90416 0.88275 0.97836 0.88063 1.21050 0.84999 0.86245 0.79636 1.43752 1.17767 1.17930 1.63087 1.90800 1.22866 1.80597 1.43466 1.20144 0.91926 0.97319 0.92538 1.21016 1.04226 0.92826 1.07902 0.89934 0.85980 0.87951 0.89908 0.91083 0.90682 0.89685 0.89255 0.90026 0.77402 0.76925 0.88019 0.88222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.56 10.95 55.55 0.61 -17.95 16 2 C 0.07 1.67 5.14 -17.34 -0.09 1.58 16 3 Si 0.92 17.03 29.59 -169.99 -5.03 12.00 16 4 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 5 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 6 H -0.26 -4.73 7.11 56.52 0.40 -4.32 16 7 C -0.44 -10.77 9.05 -37.74 -0.34 -11.12 16 8 H 0.09 2.02 7.91 -52.48 -0.42 1.61 16 9 C 0.14 3.57 5.57 -106.83 -0.60 2.98 16 10 C -0.18 -4.67 8.70 -38.87 -0.34 -5.01 16 11 C -0.02 -0.37 9.49 -39.66 -0.38 -0.75 16 12 C -0.79 -18.32 6.00 -39.29 -0.24 -18.56 16 13 S 2.71 58.56 5.56 -107.50 -0.60 57.97 16 14 O -0.98 -23.41 16.58 -57.17 -0.95 -24.35 16 15 O -0.96 -22.78 13.89 -66.81 -0.93 -23.70 16 16 N -1.00 -16.52 3.16 -105.64 -0.33 -16.86 16 17 C 0.12 1.54 7.10 -2.53 -0.02 1.52 16 18 C -0.13 -1.23 7.08 -24.58 -0.17 -1.41 16 19 C -0.12 -1.02 6.45 -24.90 -0.16 -1.18 16 20 C 0.13 1.76 3.50 -68.10 -0.24 1.52 16 21 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 22 C 0.50 7.26 6.84 -10.98 -0.08 7.19 16 23 N -0.86 -7.88 8.56 31.22 0.27 -7.62 16 24 O -0.50 -10.10 14.48 -18.03 -0.26 -10.36 16 25 C 0.00 0.02 9.49 -39.66 -0.38 -0.36 16 26 C -0.24 -5.73 9.80 -38.87 -0.38 -6.11 16 27 H 0.29 6.29 8.30 -40.82 -0.34 5.95 16 28 H 0.12 3.12 6.15 -52.49 -0.32 2.80 16 29 H 0.10 2.29 7.60 -52.49 -0.40 1.89 16 30 H 0.08 1.16 7.78 -51.93 -0.40 0.75 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.09 0.61 8.14 -51.92 -0.42 0.18 16 35 H 0.08 0.52 7.48 -51.93 -0.39 0.13 16 36 H 0.40 2.13 8.71 -40.82 -0.36 1.77 16 37 H 0.40 3.33 8.93 -40.82 -0.36 2.96 16 38 H 0.10 2.12 7.59 -52.49 -0.40 1.72 16 39 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 LS Contribution 337.54 15.07 5.09 5.09 Total: -1.00 -35.31 337.54 -10.26 -45.56 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -4.72 Total: 9.92 kcal Atomic # 6 Polarization: -26.29 SS G_CDS: -3.40 Total: -29.69 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: 0.54 Total: -42.42 kcal Atomic # 8 Polarization: -56.28 SS G_CDS: -2.14 Total: -58.42 kcal Atomic # 14 Polarization: 17.03 SS G_CDS: -5.03 Total: 12.00 kcal Atomic # 16 Polarization: 58.56 SS G_CDS: -0.60 Total: 57.97 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -35.31 -10.26 -45.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081298499.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.641 kcal (2) G-P(sol) polarization free energy of solvation -35.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds