Wall clock time and date at job start Tue Mar 31 2020 14:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86793 * 119.99863 * 2 1 4 4 H 1.48507 * 109.46988 * 269.99913 * 3 2 1 5 5 H 1.48496 * 109.47234 * 29.99846 * 3 2 1 6 6 H 1.48498 * 109.47207 * 150.00264 * 3 2 1 7 7 C 1.39950 * 119.99774 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99325 * 197.86405 * 7 2 1 9 9 C 1.41386 * 120.00280 * 17.86142 * 7 2 1 10 10 C 1.40720 * 120.24525 * 24.40117 * 9 7 2 11 11 C 1.37623 * 119.74445 * 179.97438 * 10 9 7 12 12 C 1.38633 * 120.24875 * 359.97438 * 11 10 9 13 13 S 1.76199 * 119.74749 * 180.02562 * 12 11 10 14 14 O 1.42096 * 106.40326 * 336.46657 * 13 12 11 15 15 O 1.42095 * 106.40360 * 203.54149 * 13 12 11 16 16 N 1.65604 * 107.21647 * 90.00306 * 13 12 11 17 17 C 1.47424 * 125.64919 * 270.03957 * 16 13 12 18 18 C 1.54907 * 104.83275 * 204.09088 * 17 16 13 19 19 C 1.55157 * 101.58382 * 322.99510 * 18 17 16 20 20 C 1.47020 * 125.64591 * 89.99639 * 16 13 12 21 21 H 1.08990 * 109.88675 * 298.39432 * 20 16 13 22 22 C 1.50703 * 109.88080 * 59.56520 * 20 16 13 23 23 N 1.34783 * 119.99833 * 180.02562 * 22 20 16 24 24 O 1.21282 * 120.00130 * 359.97438 * 22 20 16 25 25 C 1.38635 * 120.50239 * 0.28153 * 12 11 10 26 26 C 1.37624 * 120.24644 * 359.44444 * 25 12 11 27 27 H 0.96996 * 120.00006 * 0.02562 * 1 2 3 28 28 H 1.07995 * 120.12475 * 359.95133 * 10 9 7 29 29 H 1.07995 * 119.87038 * 179.97438 * 11 10 9 30 30 H 1.09000 * 110.36643 * 322.93641 * 17 16 13 31 31 H 1.09002 * 110.36392 * 85.14554 * 17 16 13 32 32 H 1.08999 * 110.99980 * 81.06736 * 18 17 16 33 33 H 1.09001 * 111.00252 * 204.91590 * 18 17 16 34 34 H 1.09007 * 110.71582 * 277.13778 * 19 18 17 35 35 H 1.08992 * 110.72081 * 153.86524 * 19 18 17 36 36 H 0.96997 * 120.00075 * 359.97438 * 23 22 20 37 37 H 0.97004 * 119.99473 * 179.97438 * 23 22 20 38 38 H 1.07999 * 119.87688 * 179.70127 * 25 12 11 39 39 H 1.07999 * 120.12614 * 180.27424 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0464 -1.4002 5 1 1.4396 2.6526 0.7000 6 1 3.5398 1.4402 0.7000 7 6 2.0080 -1.2120 -0.0005 8 1 3.0489 -1.2346 0.2864 9 6 1.3521 -2.4068 -0.3766 10 6 0.2211 -2.3616 -1.2127 11 6 -0.4089 -3.5310 -1.5727 12 6 0.0669 -4.7501 -1.1155 13 16 -0.7496 -6.2392 -1.5852 14 8 -2.0823 -5.8775 -1.9201 15 8 -0.4323 -7.2021 -0.5896 16 7 -0.0416 -6.7652 -2.9869 17 6 -0.4646 -6.4026 -4.3518 18 6 0.0444 -7.5610 -5.2455 19 6 1.4021 -7.8986 -4.5748 20 6 1.1135 -7.6704 -3.0761 21 1 1.9797 -7.2144 -2.5970 22 6 0.7883 -8.9832 -2.4112 23 7 1.7093 -9.9666 -2.3750 24 8 -0.3018 -9.1545 -1.9080 25 6 1.1772 -4.8062 -0.2871 26 6 1.8264 -3.6500 0.0812 27 1 -0.4850 0.8400 -0.0004 28 1 -0.1512 -1.4129 -1.5700 29 1 -1.2773 -3.4986 -2.2139 30 1 -1.5509 -6.3308 -4.4058 31 1 -0.0074 -5.4600 -4.6528 32 1 -0.6342 -8.4130 -5.2046 33 1 0.1884 -7.2272 -6.2732 34 1 2.1833 -7.2233 -4.9242 35 1 1.6766 -8.9368 -4.7610 36 1 2.5813 -9.8294 -2.7771 37 1 1.5001 -10.8114 -1.9467 38 1 1.5364 -5.7611 0.0671 39 1 2.6938 -3.6963 0.7230 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081298499.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:11 Heat of formation + Delta-G solvation = -119.925469 kcal Electronic energy + Delta-G solvation = -25823.313731 eV Core-core repulsion = 22049.086893 eV Total energy + Delta-G solvation = -3774.226838 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.02212 -39.40707 -38.43687 -37.99940 -36.69266 -35.82400 -34.67674 -32.09981 -31.76351 -31.32601 -30.31515 -27.62965 -24.44902 -23.30442 -23.00498 -22.64820 -21.50185 -19.93381 -19.44785 -19.08853 -18.35296 -18.02409 -17.51091 -17.17398 -16.62242 -16.26807 -15.85088 -15.42079 -15.22026 -14.99970 -14.72009 -14.57712 -14.39175 -14.12929 -13.98389 -13.83137 -13.53520 -13.03606 -12.99964 -12.96143 -12.87306 -12.59187 -12.56487 -12.30204 -12.09125 -12.00311 -11.91873 -11.56980 -11.36790 -11.21668 -10.96240 -10.53343 -9.95394 -9.79598 -9.58767 -8.88315 -6.66652 -0.38318 0.46211 1.02270 1.36322 1.43979 1.52570 1.71554 2.11157 2.17303 2.51587 2.61566 3.10488 3.32565 3.47471 3.58145 3.88264 4.05989 4.14383 4.26944 4.28652 4.30866 4.60500 4.79965 4.83382 4.88445 4.93490 4.95063 5.01731 5.08106 5.12706 5.21445 5.34068 5.46947 5.52384 5.56916 5.75873 5.91090 6.00171 6.12367 6.46601 6.54737 6.66015 6.78685 7.45567 8.07082 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.022205 B = 0.003575 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.694492 B = 7830.909713 C = 7844.695770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.033 3.967 3 Si 0.996 3.004 4 H -0.256 1.256 5 H -0.267 1.267 6 H -0.251 1.251 7 C -0.462 4.462 8 H 0.096 0.904 9 C 0.112 3.888 10 C -0.205 4.205 11 C -0.022 4.022 12 C -0.801 4.801 13 S 2.730 3.270 14 O -1.012 7.012 15 O -0.982 6.982 16 N -0.998 5.998 17 C 0.100 3.900 18 C -0.121 4.121 19 C -0.106 4.106 20 C 0.119 3.881 21 H 0.116 0.884 22 C 0.491 3.509 23 N -0.833 5.833 24 O -0.570 6.570 25 C -0.001 4.001 26 C -0.253 4.253 27 H 0.299 0.701 28 H 0.112 0.888 29 H 0.109 0.891 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.120 0.880 34 H 0.117 0.883 35 H 0.111 0.889 36 H 0.420 0.580 37 H 0.407 0.593 38 H 0.121 0.879 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.948 -10.586 -12.412 18.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.187 4.187 3 Si 0.815 3.185 4 H -0.181 1.181 5 H -0.191 1.191 6 H -0.174 1.174 7 C -0.489 4.489 8 H 0.114 0.886 9 C 0.108 3.892 10 C -0.225 4.225 11 C -0.042 4.042 12 C -0.894 4.894 13 S 2.828 3.172 14 O -1.002 7.002 15 O -0.973 6.973 16 N -0.836 5.836 17 C -0.024 4.024 18 C -0.160 4.160 19 C -0.145 4.145 20 C 0.009 3.991 21 H 0.133 0.867 22 C 0.274 3.726 23 N -0.399 5.399 24 O -0.448 6.448 25 C -0.021 4.021 26 C -0.273 4.273 27 H 0.110 0.890 28 H 0.130 0.870 29 H 0.127 0.873 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.085 0.915 33 H 0.139 0.861 34 H 0.135 0.865 35 H 0.129 0.871 36 H 0.252 0.748 37 H 0.238 0.762 38 H 0.139 0.861 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 7.229 -10.776 -11.615 17.415 hybrid contribution 0.450 1.057 0.603 1.297 sum 7.679 -9.719 -11.011 16.574 Atomic orbital electron populations 1.69873 1.09627 1.31989 1.30749 1.27100 0.95519 1.05467 0.90583 0.84988 0.79066 0.74486 0.80010 1.18075 1.19148 1.17450 1.20269 0.99109 0.91951 1.37569 0.88587 1.18203 0.90611 0.93375 0.87015 1.21360 1.00793 0.96884 1.03459 1.20415 0.96019 0.92007 0.95790 1.29768 1.18396 1.16548 1.24709 1.00136 0.72481 0.72689 0.71887 1.93405 1.36621 1.85578 1.84638 1.93481 1.85051 1.60454 1.58291 1.58414 1.45352 1.59071 1.20715 1.22373 1.00220 1.00156 0.79676 1.22807 0.96370 0.96834 0.99961 1.22776 0.98902 1.05276 0.87497 1.21632 0.89184 0.86898 1.01346 0.86655 1.21424 0.84706 0.87433 0.78995 1.43521 1.17767 1.16982 1.61605 1.90780 1.25626 1.81853 1.46525 1.20387 0.91710 0.97930 0.92088 1.21253 1.05048 0.92670 1.08335 0.88994 0.86983 0.87287 0.91580 0.89792 0.91483 0.86145 0.86456 0.87116 0.74814 0.76158 0.86095 0.86663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.42 10.95 21.83 0.24 -39.18 16 2 C 0.03 1.51 5.14 85.26 0.44 1.95 16 3 Si 1.00 34.20 29.59 68.60 2.03 36.23 16 4 H -0.26 -8.48 7.11 99.48 0.71 -7.77 16 5 H -0.27 -8.81 7.11 99.48 0.71 -8.11 16 6 H -0.25 -8.27 7.11 99.48 0.71 -7.56 16 7 C -0.46 -22.99 9.05 23.46 0.21 -22.78 16 8 H 0.10 4.44 7.91 -2.91 -0.02 4.41 16 9 C 0.11 5.84 5.57 -21.29 -0.12 5.72 16 10 C -0.20 -10.77 8.70 22.73 0.20 -10.57 16 11 C -0.02 -1.10 9.49 22.22 0.21 -0.89 16 12 C -0.80 -37.74 6.00 22.46 0.13 -37.61 16 13 S 2.73 120.41 5.56 -56.49 -0.31 120.10 16 14 O -1.01 -50.09 16.58 -128.00 -2.12 -52.21 16 15 O -0.98 -47.63 13.89 -118.79 -1.65 -49.28 16 16 N -1.00 -32.55 3.16 -488.14 -1.54 -34.09 16 17 C 0.10 2.55 7.10 86.85 0.62 3.17 16 18 C -0.12 -1.92 7.08 31.99 0.23 -1.70 16 19 C -0.11 -1.35 6.45 31.78 0.20 -1.15 16 20 C 0.12 2.86 3.50 44.60 0.16 3.01 16 21 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 22 C 0.49 13.59 6.84 87.66 0.60 14.19 16 23 N -0.83 -13.08 8.56 -173.52 -1.49 -14.57 16 24 O -0.57 -22.95 14.48 19.52 0.28 -22.67 16 25 C 0.00 -0.06 9.49 22.22 0.21 0.15 16 26 C -0.25 -12.22 9.80 22.73 0.22 -12.00 16 27 H 0.30 13.10 8.30 -92.71 -0.77 12.33 16 28 H 0.11 5.99 6.15 -2.91 -0.02 5.97 16 29 H 0.11 5.10 7.60 -2.91 -0.02 5.07 16 30 H 0.07 1.88 7.78 -2.39 -0.02 1.86 16 31 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.12 0.94 8.14 -2.38 -0.02 0.92 16 35 H 0.11 0.82 7.48 -2.39 -0.02 0.80 16 36 H 0.42 2.89 8.71 -92.71 -0.81 2.08 16 37 H 0.41 5.88 8.93 -92.71 -0.83 5.05 16 38 H 0.12 5.01 7.59 -2.91 -0.02 4.99 16 39 H 0.12 5.04 8.06 -2.91 -0.02 5.02 16 Total: -1.00 -80.78 337.54 -1.78 -82.56 By element: Atomic # 1 Polarization: 32.15 SS G_CDS: -0.53 Total: 31.62 kcal Atomic # 6 Polarization: -61.82 SS G_CDS: 3.31 Total: -58.51 kcal Atomic # 7 Polarization: -85.05 SS G_CDS: -2.79 Total: -87.84 kcal Atomic # 8 Polarization: -120.67 SS G_CDS: -3.49 Total: -124.16 kcal Atomic # 14 Polarization: 34.20 SS G_CDS: 2.03 Total: 36.23 kcal Atomic # 16 Polarization: 120.41 SS G_CDS: -0.31 Total: 120.10 kcal Total: -80.78 -1.78 -82.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081298499.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.370 kcal (2) G-P(sol) polarization free energy of solvation -80.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds