Wall clock time and date at job start Tue Mar 31 2020 14:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86801 * 119.99796 * 2 1 4 4 H 1.48504 * 109.46912 * 239.99948 * 3 2 1 5 5 H 1.48496 * 109.47127 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46927 * 120.00171 * 3 2 1 7 7 C 1.39943 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99691 * 197.85859 * 7 2 1 9 9 C 1.41401 * 120.00196 * 17.86839 * 7 2 1 10 10 C 1.40707 * 120.24416 * 204.38911 * 9 7 2 11 11 C 1.37621 * 119.74844 * 179.97438 * 10 9 7 12 12 C 1.38635 * 120.24384 * 359.97438 * 11 10 9 13 13 S 1.76202 * 119.74842 * 179.97438 * 12 11 10 14 14 O 1.42090 * 106.40116 * 336.46254 * 13 12 11 15 15 O 1.42096 * 106.40238 * 203.53969 * 13 12 11 16 16 N 1.65599 * 107.21606 * 90.00367 * 13 12 11 17 17 C 1.47426 * 125.65209 * 90.02346 * 16 13 12 18 18 C 1.54909 * 104.93110 * 204.15682 * 17 16 13 19 19 C 1.55165 * 101.57917 * 322.93654 * 18 17 16 20 20 C 1.47289 * 125.79209 * 270.02558 * 16 13 12 21 21 H 1.08998 * 109.98747 * 59.42563 * 20 16 13 22 22 C 1.50699 * 109.87231 * 298.35811 * 20 16 13 23 23 N 1.34778 * 120.00053 * 180.69891 * 22 20 16 24 24 O 1.21281 * 120.00117 * 0.69706 * 22 20 16 25 25 C 1.38637 * 120.50269 * 0.27698 * 12 11 10 26 26 C 1.37617 * 120.24587 * 359.44276 * 25 12 11 27 27 H 0.97000 * 119.99929 * 0.02562 * 1 2 3 28 28 H 1.08003 * 120.12774 * 359.95773 * 10 9 7 29 29 H 1.07993 * 119.87784 * 179.97438 * 11 10 9 30 30 H 1.09002 * 110.36234 * 85.25994 * 17 16 13 31 31 H 1.09003 * 110.36626 * 323.04788 * 17 16 13 32 32 H 1.08993 * 111.00543 * 81.00610 * 18 17 16 33 33 H 1.09003 * 111.00349 * 204.86157 * 18 17 16 34 34 H 1.08993 * 110.71694 * 153.87007 * 19 18 17 35 35 H 1.08998 * 110.71778 * 276.96097 * 19 18 17 36 36 H 0.96998 * 120.00322 * 0.02562 * 23 22 20 37 37 H 0.97001 * 120.00420 * 179.97438 * 23 22 20 38 38 H 1.07999 * 119.87803 * 179.70100 * 25 12 11 39 39 H 1.08002 * 120.12876 * 180.27541 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0959 1.6964 -1.2125 5 1 1.2772 2.7464 0.0006 6 1 3.0959 1.6964 1.2125 7 6 2.0079 -1.2120 0.0005 8 1 3.0489 -1.2344 0.2874 9 6 1.3520 -2.4072 -0.3747 10 6 1.8256 -3.6498 0.0852 11 6 1.1791 -4.8067 -0.2859 12 6 0.0650 -4.7508 -1.1091 13 16 -0.7523 -6.2401 -1.5766 14 8 0.2085 -7.2800 -1.4556 15 8 -1.4424 -5.9565 -2.7860 16 7 -1.9136 -6.5411 -0.4351 17 6 -3.3075 -6.0633 -0.4807 18 6 -3.7731 -6.0492 0.9967 19 6 -3.0703 -7.3141 1.5568 20 6 -1.7284 -7.3298 0.7949 21 1 -0.9476 -6.8828 1.4101 22 6 -1.3553 -8.7469 0.4434 23 7 -1.1507 -9.6521 1.4208 24 8 -1.2391 -9.0729 -0.7190 25 6 -0.4072 -3.5324 -1.5723 26 6 0.2200 -2.3625 -1.2093 27 1 -0.4850 0.8401 -0.0004 28 1 2.6932 -3.6956 0.7267 29 1 1.5410 -5.7616 0.0655 30 1 -3.9235 -6.7459 -1.0662 31 1 -3.3507 -5.0587 -0.9016 32 1 -3.4259 -5.1510 1.5072 33 1 -4.8571 -6.1416 1.0656 34 1 -2.9036 -7.2193 2.6297 35 1 -3.6528 -8.2085 1.3360 36 1 -1.2439 -9.3916 2.3505 37 1 -0.9108 -10.5644 1.1946 38 1 -1.2731 -3.5009 -2.2170 39 1 -0.1521 -1.4141 -1.5677 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081298500.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:15 Heat of formation + Delta-G solvation = -94.800333 kcal Electronic energy + Delta-G solvation = -25867.866277 eV Core-core repulsion = 22094.728947 eV Total energy + Delta-G solvation = -3773.137330 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.88065 -37.56467 -37.32994 -36.27467 -34.90792 -34.03306 -33.64102 -30.72128 -30.23618 -29.47462 -29.33320 -25.79699 -23.44293 -21.58365 -21.46327 -21.06237 -20.54084 -18.62240 -17.63132 -17.54184 -17.14237 -16.70780 -16.24969 -15.50029 -15.35830 -14.68673 -14.45695 -14.13925 -13.71303 -13.60154 -13.37096 -13.23319 -13.06733 -12.58648 -12.36541 -12.15828 -11.81230 -11.77155 -11.36963 -11.32442 -11.24111 -11.17281 -11.11416 -11.04166 -10.91969 -10.88795 -10.40107 -9.93305 -9.73017 -9.59231 -9.50513 -9.49317 -8.65332 -7.94667 -7.69707 -7.14341 -4.79708 1.25676 2.28174 2.78793 2.87660 2.89162 2.92223 2.95344 3.44060 3.66116 3.77586 4.24963 4.39068 4.52408 4.72769 4.86918 5.07877 5.17843 5.28084 5.39319 5.49795 5.58336 5.77537 5.78792 5.81961 6.06341 6.11472 6.17524 6.29509 6.54388 6.68171 6.74569 6.84368 6.99370 7.06250 7.34380 7.36467 7.43132 7.64854 7.77240 7.97107 8.32189 8.38290 8.51499 8.65707 9.77113 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.020750 B = 0.003746 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.084866 B = 7473.520250 C = 7659.917545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.073 3.927 3 Si 0.917 3.083 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.437 4.437 8 H 0.087 0.913 9 C 0.139 3.861 10 C -0.239 4.239 11 C 0.001 3.999 12 C -0.790 4.790 13 S 2.708 3.292 14 O -0.960 6.960 15 O -0.979 6.979 16 N -0.995 5.995 17 C 0.121 3.879 18 C -0.129 4.129 19 C -0.118 4.118 20 C 0.135 3.865 21 H 0.102 0.898 22 C 0.500 3.500 23 N -0.859 5.859 24 O -0.509 6.509 25 C -0.016 4.016 26 C -0.182 4.182 27 H 0.289 0.711 28 H 0.100 0.900 29 H 0.102 0.898 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.398 0.602 37 H 0.400 0.600 38 H 0.102 0.898 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.067 -8.177 8.202 13.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.149 4.149 3 Si 0.740 3.260 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.186 1.186 7 C -0.464 4.464 8 H 0.105 0.895 9 C 0.136 3.864 10 C -0.259 4.259 11 C -0.019 4.019 12 C -0.886 4.886 13 S 2.808 3.192 14 O -0.951 6.951 15 O -0.970 6.970 16 N -0.829 5.829 17 C -0.004 4.004 18 C -0.168 4.168 19 C -0.158 4.158 20 C 0.024 3.976 21 H 0.120 0.880 22 C 0.282 3.718 23 N -0.424 5.424 24 O -0.382 6.382 25 C -0.036 4.036 26 C -0.203 4.203 27 H 0.100 0.900 28 H 0.118 0.882 29 H 0.120 0.880 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.096 0.904 36 H 0.226 0.774 37 H 0.230 0.770 38 H 0.120 0.880 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.064 -8.579 6.551 12.900 hybrid contribution 0.613 1.132 0.933 1.590 sum -6.451 -7.447 7.484 12.373 Atomic orbital electron populations 1.69808 1.07907 1.30422 1.30783 1.26121 0.94892 1.02078 0.91805 0.86200 0.80188 0.79145 0.80442 1.18346 1.19893 1.18579 1.19908 0.98468 0.91193 1.36834 0.89492 1.17839 0.90063 0.92104 0.86409 1.21046 1.04388 0.92715 1.07796 1.20147 0.92250 0.97146 0.92393 1.29452 1.16170 1.16438 1.26504 1.01052 0.72026 0.73940 0.72172 1.93511 1.60037 1.55627 1.85895 1.93462 1.74737 1.86670 1.42123 1.58936 1.23331 1.64014 1.36652 1.21932 0.81546 0.99925 0.96997 1.22805 1.00433 0.98066 0.95480 1.22608 0.93763 0.99618 0.99762 1.21183 1.00179 0.88642 0.87569 0.88017 1.21081 0.76590 0.88152 0.85964 1.43747 1.75182 1.13958 1.09514 1.90789 1.48387 1.79922 1.19101 1.20266 0.96774 0.91696 0.94903 1.21337 1.00066 0.96812 1.02040 0.89960 0.88224 0.87995 0.91662 0.90098 0.89813 0.89883 0.89382 0.90374 0.77367 0.76959 0.87978 0.85952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.04 10.95 55.55 0.61 -17.43 16 2 C 0.07 1.67 5.14 -17.34 -0.09 1.58 16 3 Si 0.92 16.95 29.60 -169.99 -5.03 11.92 16 4 H -0.26 -4.82 7.11 56.52 0.40 -4.41 16 5 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 6 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 7 C -0.44 -10.71 9.06 -37.74 -0.34 -11.05 16 8 H 0.09 2.01 7.91 -52.49 -0.41 1.60 16 9 C 0.14 3.56 5.58 -106.83 -0.60 2.96 16 10 C -0.24 -5.69 9.80 -38.87 -0.38 -6.07 16 11 C 0.00 0.02 9.49 -39.66 -0.38 -0.36 16 12 C -0.79 -18.20 6.00 -39.29 -0.24 -18.44 16 13 S 2.71 58.62 5.58 -107.50 -0.60 58.02 16 14 O -0.96 -22.74 14.13 -66.58 -0.94 -23.68 16 15 O -0.98 -23.33 16.84 -57.18 -0.96 -24.29 16 16 N -1.00 -16.93 3.14 -105.45 -0.33 -17.26 16 17 C 0.12 1.69 6.97 -2.53 -0.02 1.67 16 18 C -0.13 -1.28 7.09 -24.58 -0.17 -1.45 16 19 C -0.12 -1.07 6.37 -24.89 -0.16 -1.23 16 20 C 0.14 1.82 3.48 -67.96 -0.24 1.59 16 21 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 22 C 0.50 7.39 6.81 -10.99 -0.07 7.32 16 23 N -0.86 -8.02 8.80 31.22 0.27 -7.74 16 24 O -0.51 -10.26 14.69 -17.42 -0.26 -10.52 16 25 C -0.02 -0.38 9.49 -39.66 -0.38 -0.76 16 26 C -0.18 -4.61 8.70 -38.87 -0.34 -4.95 16 27 H 0.29 6.10 8.30 -40.82 -0.34 5.77 16 28 H 0.10 2.17 8.06 -52.48 -0.42 1.75 16 29 H 0.10 2.12 7.60 -52.49 -0.40 1.72 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.64 7.85 -51.93 -0.41 0.23 16 36 H 0.40 2.22 8.79 -40.82 -0.36 1.86 16 37 H 0.40 3.36 8.93 -40.82 -0.36 3.00 16 38 H 0.10 2.27 7.59 -52.49 -0.40 1.88 16 39 H 0.12 3.11 6.15 -52.49 -0.32 2.79 16 LS Contribution 339.03 15.07 5.11 5.11 Total: -1.00 -34.73 339.03 -10.28 -45.01 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -4.76 Total: 10.06 kcal Atomic # 6 Polarization: -25.80 SS G_CDS: -3.40 Total: -29.20 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: 0.55 Total: -42.43 kcal Atomic # 8 Polarization: -56.33 SS G_CDS: -2.16 Total: -58.49 kcal Atomic # 14 Polarization: 16.95 SS G_CDS: -5.03 Total: 11.92 kcal Atomic # 16 Polarization: 58.62 SS G_CDS: -0.60 Total: 58.02 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.73 -10.28 -45.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081298500.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.785 kcal (2) G-P(sol) polarization free energy of solvation -34.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds