Wall clock time and date at job start Tue Mar 31 2020 14:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31392 * 1 3 3 Si 1.86798 * 119.99940 * 2 1 4 4 H 1.48496 * 109.47271 * 239.99908 * 3 2 1 5 5 H 1.48504 * 109.47376 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47042 * 119.99659 * 3 2 1 7 7 C 1.38906 * 120.00110 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00034 * 171.14999 * 7 2 1 9 9 N 1.37344 * 119.99520 * 351.42826 * 7 2 1 10 10 C 1.35477 * 127.83537 * 319.01762 * 9 7 2 11 11 O 1.21583 * 126.86780 * 0.02562 * 10 9 7 12 12 O 1.34287 * 106.26460 * 179.86186 * 10 9 7 13 13 N 1.21001 * 110.92350 * 0.43667 * 12 10 9 14 14 C 1.29965 * 111.55448 * 359.72779 * 13 12 10 15 15 C 1.48052 * 126.53723 * 180.02562 * 14 13 12 16 16 C 1.39514 * 120.10691 * 171.84468 * 15 14 13 17 17 C 1.37996 * 119.98368 * 179.78244 * 16 15 14 18 18 C 1.38261 * 120.19336 * 0.46853 * 17 16 15 19 19 C 1.38816 * 120.21764 * 359.78652 * 18 17 16 20 20 O 1.35898 * 119.99689 * 180.02562 * 19 18 17 21 21 C 1.35884 * 118.00161 * 256.91097 * 20 19 18 22 22 C 1.38760 * 120.05312 * 4.24891 * 21 20 19 23 23 C 1.38138 * 119.93611 * 179.74262 * 22 21 20 24 24 C 1.38269 * 120.06057 * 0.51374 * 23 22 21 25 25 C 1.38274 * 120.11720 * 359.76179 * 24 23 22 26 26 C 1.38145 * 120.05408 * 359.97438 * 25 24 23 27 27 C 1.38545 * 120.01719 * 359.97438 * 19 18 17 28 28 H 0.96998 * 119.99662 * 0.02562 * 1 2 3 29 29 H 1.08008 * 120.00695 * 0.02562 * 16 15 14 30 30 H 1.07998 * 119.90082 * 180.20551 * 17 16 15 31 31 H 1.08011 * 119.89077 * 179.76069 * 18 17 16 32 32 H 1.07996 * 120.03538 * 0.02562 * 22 21 20 33 33 H 1.08000 * 119.96995 * 180.23204 * 23 22 21 34 34 H 1.07997 * 119.94662 * 179.74298 * 24 23 22 35 35 H 1.08000 * 119.97279 * 180.02562 * 25 24 23 36 36 H 1.07996 * 120.02637 * 179.97438 * 26 25 24 37 37 H 1.08001 * 120.09519 * 179.97438 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 3.1017 1.6964 -1.2124 5 1 1.2829 2.7465 -0.0006 6 1 3.1016 1.6964 1.2126 7 6 2.0085 -1.2030 0.0005 8 1 3.0788 -1.2086 -0.1433 9 7 1.3332 -2.3856 0.1784 10 6 0.3196 -2.6424 1.0398 11 8 -0.1861 -1.8632 1.8242 12 8 -0.0173 -3.9286 0.8515 13 7 0.6781 -4.4375 0.0020 14 6 1.5390 -3.5917 -0.4801 15 6 2.5462 -3.8616 -1.5311 16 6 3.2922 -2.8137 -2.0712 17 6 4.2335 -3.0688 -3.0474 18 6 4.4338 -4.3599 -3.4999 19 6 3.6924 -5.4080 -2.9720 20 8 3.8932 -6.6753 -3.4196 21 6 2.9826 -7.1994 -4.2814 22 6 1.9365 -6.4162 -4.7479 23 6 1.0152 -6.9498 -5.6280 24 6 1.1287 -8.2661 -6.0359 25 6 2.1670 -9.0503 -5.5680 26 6 3.0941 -8.5200 -4.6919 27 6 2.7484 -5.1627 -1.9880 28 1 -0.4849 0.8401 -0.0004 29 1 3.1357 -1.8035 -1.7225 30 1 4.8126 -2.2570 -3.4623 31 1 5.1692 -4.5534 -4.2669 32 1 1.8452 -5.3892 -4.4268 33 1 0.2028 -6.3397 -5.9944 34 1 0.4050 -8.6826 -6.7208 35 1 2.2537 -10.0781 -5.8884 36 1 3.9047 -9.1331 -4.3265 37 1 2.1706 -5.9772 -1.5767 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110152929.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:14 Heat of formation + Delta-G solvation = 50.331565 kcal Electronic energy + Delta-G solvation = -26244.920126 eV Core-core repulsion = 22342.632236 eV Total energy + Delta-G solvation = -3902.287890 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.85271 -40.87034 -38.76767 -37.40651 -36.93364 -35.36919 -32.86828 -31.43166 -31.23534 -30.58580 -29.54229 -29.30508 -26.48309 -24.02427 -23.63018 -22.74534 -22.58369 -21.40204 -20.72681 -18.70656 -18.27163 -17.13856 -17.00558 -16.38360 -16.01613 -15.90842 -15.76673 -15.18866 -14.68414 -14.59320 -14.42225 -14.03041 -13.65137 -13.53714 -13.44515 -13.36141 -12.69370 -12.57417 -12.16322 -12.06564 -11.85498 -11.71623 -11.59966 -11.35379 -11.17064 -10.97040 -10.88979 -10.66354 -10.36165 -9.39416 -9.11029 -9.08609 -8.78991 -8.58227 -8.29186 -7.57757 -6.75961 -4.67628 0.98703 1.20997 1.26551 1.35767 2.72329 2.95116 3.02001 3.05571 3.22362 3.42708 3.68327 3.80659 3.96091 4.03638 4.35637 4.68703 4.75819 4.81958 4.94947 5.04003 5.07241 5.14857 5.26946 5.32928 5.46877 5.51645 5.56984 5.82338 5.87144 5.92021 6.11275 6.21131 6.30985 6.37260 6.42441 6.51438 6.61030 6.68347 6.78024 6.92743 7.01258 7.58416 7.85743 8.29118 8.64649 9.35540 9.44442 10.29148 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.017237 B = 0.003576 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.017240 B = 7828.829550 C = 8607.845356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.058 3.942 3 Si 0.937 3.063 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.352 4.352 8 H 0.115 0.885 9 N -0.359 5.359 10 C 0.524 3.476 11 O -0.484 6.484 12 O -0.027 6.027 13 N -0.381 5.381 14 C 0.218 3.782 15 C 0.017 3.983 16 C -0.091 4.091 17 C -0.110 4.110 18 C -0.116 4.116 19 C 0.070 3.930 20 O -0.256 6.256 21 C 0.124 3.876 22 C -0.190 4.190 23 C -0.081 4.081 24 C -0.157 4.157 25 C -0.087 4.087 26 C -0.149 4.149 27 C -0.099 4.099 28 H 0.282 0.718 29 H 0.167 0.833 30 H 0.135 0.865 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.125 0.875 34 H 0.122 0.878 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.925 -9.640 -12.730 17.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.158 4.158 3 Si 0.761 3.239 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.478 4.478 8 H 0.132 0.868 9 N -0.081 5.081 10 C 0.277 3.723 11 O -0.364 6.364 12 O -0.071 6.071 13 N -0.125 5.125 14 C -0.045 4.045 15 C 0.015 3.985 16 C -0.110 4.110 17 C -0.128 4.128 18 C -0.135 4.135 19 C 0.028 3.972 20 O -0.168 6.168 21 C 0.081 3.919 22 C -0.209 4.209 23 C -0.099 4.099 24 C -0.176 4.176 25 C -0.105 4.105 26 C -0.168 4.168 27 C -0.119 4.119 28 H 0.093 0.907 29 H 0.184 0.816 30 H 0.153 0.847 31 H 0.148 0.852 32 H 0.149 0.851 33 H 0.143 0.857 34 H 0.140 0.860 35 H 0.146 0.854 36 H 0.148 0.852 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 7.166 -10.137 -12.189 17.398 hybrid contribution 0.265 1.637 0.132 1.663 sum 7.430 -8.500 -12.057 16.518 Atomic orbital electron populations 1.69879 1.06579 1.29570 1.37551 1.25668 0.95584 1.00595 0.93928 0.85843 0.79123 0.79345 0.79582 1.18948 1.20171 1.18960 1.19252 0.92087 0.79544 1.56912 0.86781 1.42197 1.29688 1.08861 1.27362 1.20544 0.84928 0.82146 0.84655 1.90962 1.59319 1.46870 1.39297 1.85314 1.49722 1.25179 1.46848 1.73997 1.07830 1.21624 1.09033 1.22495 0.98075 0.86824 0.97143 1.17189 0.94338 0.92869 0.94057 1.22253 0.92837 1.01636 0.94315 1.21007 0.98529 0.95911 0.97391 1.21310 1.00488 0.91756 0.99955 1.18322 0.99117 0.82953 0.96799 1.84386 1.46586 1.27459 1.58382 1.19244 0.89231 0.92962 0.90417 1.21423 0.96632 1.01057 1.01742 1.21002 0.97837 0.95355 0.95748 1.21084 0.99517 0.94480 1.02475 1.20936 0.93842 0.99635 0.96054 1.20417 1.02082 0.92596 1.01712 1.21418 0.97235 0.96779 0.96511 0.90704 0.81585 0.84693 0.85223 0.85095 0.85690 0.85971 0.85415 0.85164 0.84380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.06 11.44 55.49 0.64 -21.43 16 2 C 0.06 1.44 5.21 -17.49 -0.09 1.35 16 3 Si 0.94 18.43 29.56 -169.99 -5.02 13.40 16 4 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 5 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 6 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.35 -8.60 7.95 -14.83 -0.12 -8.72 16 8 H 0.11 2.46 6.29 -52.49 -0.33 2.13 16 9 N -0.36 -9.15 2.85 -64.24 -0.18 -9.34 16 10 C 0.52 14.49 8.56 54.34 0.47 14.96 16 11 O -0.48 -14.66 16.18 -18.87 -0.31 -14.97 16 12 O -0.03 -0.69 11.25 -7.67 -0.09 -0.78 16 13 N -0.38 -8.89 11.74 32.16 0.38 -8.51 16 14 C 0.22 4.93 7.76 -153.42 -1.19 3.74 16 15 C 0.02 0.32 5.87 -104.98 -0.62 -0.29 16 16 C -0.09 -1.50 9.24 -39.19 -0.36 -1.86 16 17 C -0.11 -1.43 10.03 -39.66 -0.40 -1.83 16 18 C -0.12 -1.48 9.98 -39.36 -0.39 -1.87 16 19 C 0.07 1.02 4.32 -39.25 -0.17 0.85 16 20 O -0.26 -3.67 9.98 -3.56 -0.04 -3.71 16 21 C 0.12 1.66 6.61 -39.20 -0.26 1.40 16 22 C -0.19 -2.51 8.98 -39.43 -0.35 -2.86 16 23 C -0.08 -0.92 10.04 -39.61 -0.40 -1.32 16 24 C -0.16 -1.57 10.04 -39.56 -0.40 -1.96 16 25 C -0.09 -0.84 10.04 -39.60 -0.40 -1.24 16 26 C -0.15 -1.69 9.99 -39.43 -0.39 -2.08 16 27 C -0.10 -1.64 8.77 -39.05 -0.34 -1.98 16 28 H 0.28 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.17 2.92 4.54 -52.48 -0.24 2.68 16 30 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 31 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 32 H 0.13 1.83 6.46 -52.49 -0.34 1.49 16 33 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 34 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 36 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 37 H 0.14 2.34 7.89 -52.49 -0.41 1.93 16 LS Contribution 329.54 15.07 4.97 4.97 Total: -1.00 -30.75 329.54 -8.06 -38.82 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -2.99 Total: 5.25 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -5.41 Total: -3.71 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: 0.83 Total: -39.27 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -0.43 Total: -19.45 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.02 Total: 13.40 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.75 -8.06 -38.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110152929.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.148 kcal (2) G-P(sol) polarization free energy of solvation -30.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds