Wall clock time and date at job start Tue Mar 31 2020 14:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31392 * 1 3 3 Si 1.86798 * 119.99940 * 2 1 4 4 H 1.48496 * 109.47271 * 239.99908 * 3 2 1 5 5 H 1.48504 * 109.47376 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47042 * 119.99659 * 3 2 1 7 7 C 1.38906 * 120.00110 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00034 * 171.14999 * 7 2 1 9 9 N 1.37344 * 119.99520 * 351.42826 * 7 2 1 10 10 C 1.35477 * 127.83537 * 319.01762 * 9 7 2 11 11 O 1.21583 * 126.86780 * 0.02562 * 10 9 7 12 12 O 1.34287 * 106.26460 * 179.86186 * 10 9 7 13 13 N 1.21001 * 110.92350 * 0.43667 * 12 10 9 14 14 C 1.29965 * 111.55448 * 359.72779 * 13 12 10 15 15 C 1.48052 * 126.53723 * 180.02562 * 14 13 12 16 16 C 1.39514 * 120.10691 * 171.84468 * 15 14 13 17 17 C 1.37996 * 119.98368 * 179.78244 * 16 15 14 18 18 C 1.38261 * 120.19336 * 0.46853 * 17 16 15 19 19 C 1.38816 * 120.21764 * 359.78652 * 18 17 16 20 20 O 1.35898 * 119.99689 * 180.02562 * 19 18 17 21 21 C 1.35884 * 118.00161 * 256.91097 * 20 19 18 22 22 C 1.38760 * 120.05312 * 4.24891 * 21 20 19 23 23 C 1.38138 * 119.93611 * 179.74262 * 22 21 20 24 24 C 1.38269 * 120.06057 * 0.51374 * 23 22 21 25 25 C 1.38274 * 120.11720 * 359.76179 * 24 23 22 26 26 C 1.38145 * 120.05408 * 359.97438 * 25 24 23 27 27 C 1.38545 * 120.01719 * 359.97438 * 19 18 17 28 28 H 0.96998 * 119.99662 * 0.02562 * 1 2 3 29 29 H 1.08008 * 120.00695 * 0.02562 * 16 15 14 30 30 H 1.07998 * 119.90082 * 180.20551 * 17 16 15 31 31 H 1.08011 * 119.89077 * 179.76069 * 18 17 16 32 32 H 1.07996 * 120.03538 * 0.02562 * 22 21 20 33 33 H 1.08000 * 119.96995 * 180.23204 * 23 22 21 34 34 H 1.07997 * 119.94662 * 179.74298 * 24 23 22 35 35 H 1.08000 * 119.97279 * 180.02562 * 25 24 23 36 36 H 1.07996 * 120.02637 * 179.97438 * 26 25 24 37 37 H 1.08001 * 120.09519 * 179.97438 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 3.1017 1.6964 -1.2124 5 1 1.2829 2.7465 -0.0006 6 1 3.1016 1.6964 1.2126 7 6 2.0085 -1.2030 0.0005 8 1 3.0788 -1.2086 -0.1433 9 7 1.3332 -2.3856 0.1784 10 6 0.3196 -2.6424 1.0398 11 8 -0.1861 -1.8632 1.8242 12 8 -0.0173 -3.9286 0.8515 13 7 0.6781 -4.4375 0.0020 14 6 1.5390 -3.5917 -0.4801 15 6 2.5462 -3.8616 -1.5311 16 6 3.2922 -2.8137 -2.0712 17 6 4.2335 -3.0688 -3.0474 18 6 4.4338 -4.3599 -3.4999 19 6 3.6924 -5.4080 -2.9720 20 8 3.8932 -6.6753 -3.4196 21 6 2.9826 -7.1994 -4.2814 22 6 1.9365 -6.4162 -4.7479 23 6 1.0152 -6.9498 -5.6280 24 6 1.1287 -8.2661 -6.0359 25 6 2.1670 -9.0503 -5.5680 26 6 3.0941 -8.5200 -4.6919 27 6 2.7484 -5.1627 -1.9880 28 1 -0.4849 0.8401 -0.0004 29 1 3.1357 -1.8035 -1.7225 30 1 4.8126 -2.2570 -3.4623 31 1 5.1692 -4.5534 -4.2669 32 1 1.8452 -5.3892 -4.4268 33 1 0.2028 -6.3397 -5.9944 34 1 0.4050 -8.6826 -6.7208 35 1 2.2537 -10.0781 -5.8884 36 1 3.9047 -9.1331 -4.3265 37 1 2.1706 -5.9772 -1.5767 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110152929.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:13 Heat of formation + Delta-G solvation = 34.917080 kcal Electronic energy + Delta-G solvation = -26245.588548 eV Core-core repulsion = 22342.632236 eV Total energy + Delta-G solvation = -3902.956312 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.79405 -41.92120 -39.87039 -39.07474 -38.42003 -37.23989 -34.69040 -33.05160 -32.17777 -31.55573 -31.19330 -30.35155 -28.42338 -25.56288 -24.80357 -24.36427 -23.55096 -22.61492 -22.20998 -20.30068 -19.72143 -19.06246 -18.29753 -17.92372 -17.36328 -17.10243 -16.84095 -16.81837 -16.45911 -16.14084 -15.54789 -15.30469 -14.81640 -14.63987 -14.59794 -14.56863 -14.35497 -14.10264 -13.93394 -13.50815 -13.35622 -13.03458 -12.94394 -12.55864 -12.52798 -12.22200 -12.09330 -12.03321 -11.88948 -11.27230 -11.02252 -10.17500 -9.96973 -9.90888 -9.42604 -9.22891 -8.63894 -6.64273 -0.34671 0.06697 0.38777 0.45163 1.13870 1.28349 1.44905 1.52948 1.61429 1.76032 2.11578 2.28493 2.60843 2.74457 2.82963 2.86871 3.33956 3.83693 3.85382 3.92253 3.99177 4.20338 4.24832 4.28534 4.35774 4.46994 4.49603 4.59146 4.66929 4.78055 4.90762 5.07899 5.11441 5.19750 5.34102 5.36179 5.46992 5.48493 5.59206 5.64390 5.94143 5.95824 6.34300 6.53766 6.72025 7.33661 7.45925 8.43858 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.017237 B = 0.003576 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.017240 B = 7828.829550 C = 8607.845356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.007 3.993 3 Si 1.012 2.988 4 H -0.229 1.229 5 H -0.284 1.284 6 H -0.263 1.263 7 C -0.367 4.367 8 H 0.143 0.857 9 N -0.367 5.367 10 C 0.504 3.496 11 O -0.526 6.526 12 O -0.037 6.037 13 N -0.392 5.392 14 C 0.234 3.766 15 C -0.016 4.016 16 C -0.096 4.096 17 C -0.091 4.091 18 C -0.096 4.096 19 C 0.073 3.927 20 O -0.263 6.263 21 C 0.100 3.900 22 C -0.209 4.209 23 C -0.094 4.094 24 C -0.154 4.154 25 C -0.082 4.082 26 C -0.155 4.155 27 C -0.101 4.101 28 H 0.281 0.719 29 H 0.156 0.844 30 H 0.178 0.822 31 H 0.165 0.835 32 H 0.115 0.885 33 H 0.136 0.864 34 H 0.150 0.850 35 H 0.162 0.838 36 H 0.145 0.855 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.936 -10.185 -15.894 21.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.203 4.203 3 Si 0.831 3.169 4 H -0.152 1.152 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.492 4.492 8 H 0.160 0.840 9 N -0.088 5.088 10 C 0.257 3.743 11 O -0.410 6.410 12 O -0.077 6.077 13 N -0.137 5.137 14 C -0.030 4.030 15 C -0.018 4.018 16 C -0.116 4.116 17 C -0.108 4.108 18 C -0.115 4.115 19 C 0.031 3.969 20 O -0.176 6.176 21 C 0.057 3.943 22 C -0.228 4.228 23 C -0.112 4.112 24 C -0.172 4.172 25 C -0.100 4.100 26 C -0.173 4.173 27 C -0.122 4.122 28 H 0.091 0.909 29 H 0.173 0.827 30 H 0.195 0.805 31 H 0.182 0.818 32 H 0.133 0.867 33 H 0.154 0.846 34 H 0.168 0.832 35 H 0.179 0.821 36 H 0.163 0.837 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 10.192 -10.729 -15.374 21.339 hybrid contribution -0.606 1.577 0.929 1.928 sum 9.585 -9.152 -14.445 19.604 Atomic orbital electron populations 1.70045 1.08913 1.30407 1.39785 1.26905 0.96188 1.04638 0.92591 0.84751 0.77727 0.73564 0.80907 1.15155 1.20935 1.18793 1.20014 0.93452 0.79354 1.56356 0.84007 1.42477 1.29186 1.10037 1.27058 1.20881 0.85898 0.82482 0.84990 1.90888 1.60954 1.48123 1.41022 1.85283 1.50393 1.24390 1.47670 1.73965 1.08672 1.21664 1.09380 1.23292 0.97786 0.85172 0.96738 1.17259 0.95256 0.94522 0.94742 1.22219 0.93631 1.00329 0.95396 1.21382 0.96944 0.97188 0.95336 1.21717 0.99579 0.90873 0.99293 1.18421 0.98490 0.83904 0.96115 1.84354 1.47009 1.27282 1.58955 1.19496 0.89621 0.93964 0.91189 1.21416 0.97697 1.00625 1.03013 1.21259 0.97846 0.96490 0.95599 1.21472 0.99881 0.93745 1.02112 1.21373 0.92756 1.01081 0.94754 1.20749 1.02921 0.91878 1.01797 1.21286 0.97979 0.95580 0.97317 0.90937 0.82685 0.80493 0.81761 0.86694 0.84604 0.83199 0.82066 0.83722 0.85857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -48.94 11.44 21.65 0.25 -48.69 16 2 C 0.01 0.33 5.21 84.92 0.44 0.78 16 3 Si 1.01 37.17 29.56 68.60 2.03 39.20 16 4 H -0.23 -7.06 7.11 99.48 0.71 -6.35 16 5 H -0.28 -10.66 7.11 99.48 0.71 -9.95 16 6 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 7 C -0.37 -18.12 7.95 83.99 0.67 -17.45 16 8 H 0.14 5.98 6.29 -2.91 -0.02 5.96 16 9 N -0.37 -19.39 2.85 -588.44 -1.68 -21.07 16 10 C 0.50 29.46 8.56 129.69 1.11 30.57 16 11 O -0.53 -33.82 16.18 19.13 0.31 -33.51 16 12 O -0.04 -2.02 11.25 92.28 1.04 -0.98 16 13 N -0.39 -19.19 11.74 -53.82 -0.63 -19.82 16 14 C 0.23 10.96 7.76 136.18 1.06 12.01 16 15 C -0.02 -0.58 5.87 -20.09 -0.12 -0.70 16 16 C -0.10 -3.00 9.24 22.52 0.21 -2.79 16 17 C -0.09 -2.00 10.03 22.22 0.22 -1.78 16 18 C -0.10 -2.09 9.98 22.41 0.22 -1.87 16 19 C 0.07 2.01 4.32 22.48 0.10 2.11 16 20 O -0.26 -7.19 9.98 -35.67 -0.36 -7.55 16 21 C 0.10 2.54 6.61 22.52 0.15 2.68 16 22 C -0.21 -5.38 8.98 22.37 0.20 -5.18 16 23 C -0.09 -2.01 10.04 22.25 0.22 -1.78 16 24 C -0.15 -2.62 10.04 22.29 0.22 -2.40 16 25 C -0.08 -1.32 10.04 22.26 0.22 -1.10 16 26 C -0.16 -3.15 9.99 22.37 0.22 -2.92 16 27 C -0.10 -3.36 8.77 22.62 0.20 -3.16 16 28 H 0.28 15.02 8.31 -92.71 -0.77 14.25 16 29 H 0.16 5.21 4.54 -2.91 -0.01 5.19 16 30 H 0.18 2.47 8.06 -2.91 -0.02 2.45 16 31 H 0.16 2.55 8.06 -2.90 -0.02 2.53 16 32 H 0.12 3.24 6.46 -2.91 -0.02 3.22 16 33 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 34 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 35 H 0.16 1.49 8.06 -2.91 -0.02 1.46 16 36 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 37 H 0.12 4.37 7.89 -2.91 -0.02 4.35 16 Total: -1.00 -72.05 329.54 7.45 -64.60 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: 1.14 Total: 20.79 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: 5.35 Total: 7.02 kcal Atomic # 7 Polarization: -87.52 SS G_CDS: -2.06 Total: -89.58 kcal Atomic # 8 Polarization: -43.02 SS G_CDS: 0.99 Total: -42.03 kcal Atomic # 14 Polarization: 37.17 SS G_CDS: 2.03 Total: 39.20 kcal Total: -72.05 7.45 -64.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110152929.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.522 kcal (2) G-P(sol) polarization free energy of solvation -72.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds