Wall clock time and date at job start Tue Mar 31 2020 14:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53003 * 109.47320 * 53.69798 * 3 2 1 5 5 C 1.53003 * 109.46897 * 179.97438 * 4 3 2 6 6 S 1.81399 * 109.46989 * 180.02562 * 5 4 3 7 7 O 1.42095 * 110.54518 * 68.37004 * 6 5 4 8 8 O 1.42104 * 110.54136 * 291.62446 * 6 5 4 9 9 N 1.65594 * 104.44982 * 179.97438 * 6 5 4 10 10 C 1.46506 * 119.99712 * 65.00062 * 9 6 5 11 11 C 1.50699 * 109.46983 * 165.00095 * 10 9 6 12 12 C 1.38328 * 119.96224 * 270.02054 * 11 10 9 13 13 C 1.38280 * 120.13484 * 180.02562 * 12 11 10 14 14 C 1.38120 * 120.07150 * 359.67534 * 13 12 11 15 15 C 1.38861 * 119.92830 * 0.59673 * 14 13 12 16 16 O 1.35751 * 120.06597 * 179.69892 * 15 14 13 17 17 C 1.34829 * 117.00376 * 354.17384 * 16 15 14 18 18 H 1.07998 * 119.99999 * 5.03596 * 17 16 15 19 19 C 1.38657 * 120.00083 * 185.03464 * 17 16 15 20 20 N 1.31555 * 119.99797 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99748 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47410 * 90.00109 * 21 19 17 23 23 H 1.48504 * 109.46801 * 209.99865 * 21 19 17 24 24 H 1.48497 * 109.47495 * 329.99577 * 21 19 17 25 25 C 1.38073 * 119.96952 * 89.99494 * 11 10 9 26 26 H 1.08996 * 109.47126 * 293.69083 * 3 2 1 27 27 H 1.09002 * 109.46890 * 173.69764 * 3 2 1 28 28 H 1.08997 * 109.46937 * 59.99914 * 4 3 2 29 29 H 1.08997 * 109.46716 * 299.99227 * 4 3 2 30 30 H 1.08996 * 109.47288 * 59.99445 * 5 4 3 31 31 H 1.09002 * 109.47151 * 299.99867 * 5 4 3 32 32 H 0.97001 * 120.00325 * 244.99491 * 9 6 5 33 33 H 1.08996 * 109.47397 * 44.99663 * 10 9 6 34 34 H 1.08997 * 109.47015 * 284.99506 * 10 9 6 35 35 H 1.08001 * 119.93314 * 359.97438 * 12 11 10 36 36 H 1.08007 * 119.96121 * 179.97438 * 13 12 11 37 37 H 1.08001 * 120.03709 * 180.32387 * 14 13 12 38 38 H 0.96998 * 119.99749 * 179.97438 * 20 19 17 39 39 H 1.08001 * 120.03594 * 0.04940 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1185 -0.8531 -1.1625 5 6 4.6485 -0.8519 -1.1628 6 16 5.2537 -1.8635 -2.5415 7 8 4.9567 -1.2417 -3.7842 8 8 4.9587 -3.2358 -2.3201 9 7 6.9032 -1.7758 -2.4255 10 6 7.5872 -2.3477 -1.2629 11 6 9.0598 -2.4723 -1.5576 12 6 9.5544 -3.6310 -2.1289 13 6 10.9052 -3.7493 -2.4002 14 6 11.7637 -2.7077 -2.1076 15 6 11.2711 -1.5456 -1.5289 16 8 12.1135 -0.5225 -1.2345 17 6 13.4311 -0.7427 -1.4164 18 1 13.7679 -1.6693 -1.8572 19 6 14.3538 0.2204 -1.0374 20 7 15.6395 0.0052 -1.2144 21 14 13.7713 1.8227 -0.2742 22 1 13.6967 1.6701 1.2010 23 1 14.7270 2.9080 -0.6118 24 1 12.4271 2.1641 -0.8051 25 6 9.9139 -1.4298 -1.2575 26 1 2.9715 -0.4121 0.9410 27 1 2.9709 1.0223 -0.1128 28 1 2.7549 -0.4403 -2.1035 29 1 2.7557 -1.8747 -1.0496 30 1 5.0124 -1.2643 -0.2218 31 1 5.0110 0.1699 -1.2759 32 1 7.4167 -1.3458 -3.1272 33 1 7.1750 -3.3335 -1.0475 34 1 7.4430 -1.6972 -0.4003 35 1 8.8844 -4.4451 -2.3627 36 1 11.2884 -4.6554 -2.8460 37 1 12.8178 -2.7988 -2.3246 38 1 16.2850 0.6792 -0.9497 39 1 9.5272 -0.5255 -0.8111 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113303591.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:55 Heat of formation + Delta-G solvation = -54.761830 kcal Electronic energy + Delta-G solvation = -23672.678899 eV Core-core repulsion = 19901.277769 eV Total energy + Delta-G solvation = -3771.401130 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.39287 -37.59538 -37.43072 -37.16349 -36.18308 -35.16133 -34.95199 -32.47742 -30.61231 -29.38202 -29.21289 -25.80116 -25.02515 -23.22870 -21.89689 -20.84931 -19.60230 -18.48710 -18.03125 -17.70689 -17.24597 -16.71839 -16.35146 -16.00058 -15.36788 -15.08402 -14.88321 -14.65582 -14.35524 -14.07702 -13.94062 -13.64636 -13.51080 -13.16245 -12.91551 -12.70002 -12.53314 -12.43306 -12.36856 -12.33329 -12.28238 -12.19171 -12.07062 -11.53616 -11.43190 -11.07404 -10.95059 -10.86854 -10.82429 -10.26008 -9.66223 -9.48932 -8.96889 -8.38495 -7.51920 -6.49858 -4.17419 -0.05394 1.76766 2.11586 2.24717 2.31163 2.61860 3.15109 3.18702 3.30350 3.31868 3.57757 3.84475 4.11492 4.15212 4.22801 4.31231 4.36389 4.56316 4.68843 4.80777 4.85622 4.99727 5.01793 5.15916 5.19372 5.32193 5.42370 5.53673 5.69192 5.78435 5.97788 6.10269 6.37198 6.63014 6.81697 6.96233 7.07074 7.07134 7.17452 7.45966 7.69564 7.93783 8.84787 9.45236 10.57595 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.016258 B = 0.002541 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.764703 B =11018.182099 C =12279.986754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C 0.203 3.797 3 C -0.018 4.018 4 C -0.110 4.110 5 C -0.637 4.637 6 S 2.613 3.387 7 O -0.957 6.957 8 O -0.953 6.953 9 N -1.112 6.112 10 C 0.162 3.838 11 C -0.068 4.068 12 C -0.185 4.185 13 C -0.077 4.077 14 C -0.212 4.212 15 C 0.155 3.845 16 O -0.216 6.216 17 C -0.391 4.391 18 H 0.107 0.893 19 C 0.063 3.937 20 N -0.877 5.877 21 Si 0.907 3.093 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.260 1.260 25 C -0.175 4.175 26 H 0.116 0.884 27 H 0.115 0.885 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.140 0.860 31 H 0.142 0.858 32 H 0.423 0.577 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.134 0.866 38 H 0.280 0.720 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.297 -1.339 2.473 19.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.109 5.109 2 C -0.115 4.115 3 C -0.059 4.059 4 C -0.150 4.150 5 C -0.765 4.765 6 S 2.705 3.295 7 O -0.947 6.947 8 O -0.943 6.943 9 N -0.872 5.872 10 C 0.037 3.963 11 C -0.070 4.070 12 C -0.204 4.204 13 C -0.096 4.096 14 C -0.231 4.231 15 C 0.103 3.897 16 O -0.121 6.121 17 C -0.467 4.467 18 H 0.124 0.876 19 C -0.140 4.140 20 N -0.515 5.515 21 Si 0.732 3.268 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.184 1.184 25 C -0.195 4.195 26 H 0.134 0.866 27 H 0.133 0.867 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.158 0.842 31 H 0.160 0.840 32 H 0.258 0.742 33 H 0.104 0.896 34 H 0.089 0.911 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.151 0.849 38 H 0.090 0.910 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -21.402 -1.580 2.091 21.562 hybrid contribution 1.064 1.242 0.606 1.744 sum -20.338 -0.338 2.697 20.519 Atomic orbital electron populations 1.81272 1.13081 1.08410 1.08174 1.29185 0.95300 0.93489 0.93574 1.19259 0.81519 1.03777 1.01318 1.21238 0.91348 1.02412 1.00038 1.30694 1.05122 1.18092 1.22637 1.04884 0.73351 0.75556 0.75739 1.93621 1.83277 1.78648 1.39181 1.93617 1.83549 1.30585 1.86565 1.55610 1.25181 1.74003 1.32410 1.20189 0.90674 0.98850 0.86630 1.19116 0.92850 0.94437 1.00556 1.20602 0.95406 0.98114 1.06316 1.20829 0.93147 0.97673 0.97909 1.21379 1.01334 0.94548 1.05879 1.19062 0.90057 0.87463 0.93119 1.83563 1.18211 1.34362 1.75968 1.20754 0.77065 1.06478 1.42371 0.87607 1.24482 0.94043 0.99158 0.96355 1.69642 1.00229 1.35886 1.45697 0.86163 0.79368 0.81494 0.79731 1.19882 1.20776 1.18386 1.20042 0.90932 0.99874 1.08631 0.86639 0.86660 0.89270 0.89221 0.84189 0.84005 0.74194 0.89553 0.91148 0.87036 0.86946 0.84858 0.90962 0.86317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -4.48 18.54 42.15 0.78 -3.70 16 2 C 0.20 1.34 15.43 -20.76 -0.32 1.02 16 3 C -0.02 -0.04 5.70 -29.52 -0.17 -0.21 16 4 C -0.11 -0.40 5.18 -26.73 -0.14 -0.54 16 5 C -0.64 -2.14 6.07 37.16 0.23 -1.92 16 6 S 2.61 21.24 5.46 -107.50 -0.59 20.65 16 7 O -0.96 -11.13 18.08 -57.54 -1.04 -12.18 16 8 O -0.95 -10.90 17.50 -57.54 -1.01 -11.91 16 9 N -1.11 -9.89 5.88 -11.65 -0.07 -9.95 16 10 C 0.16 1.55 6.25 -5.19 -0.03 1.52 16 11 C -0.07 -0.95 5.27 -104.65 -0.55 -1.50 16 12 C -0.18 -2.73 9.70 -39.53 -0.38 -3.12 16 13 C -0.08 -1.27 10.04 -39.61 -0.40 -1.67 16 14 C -0.21 -4.19 9.17 -39.39 -0.36 -4.55 16 15 C 0.16 3.24 6.65 -39.11 -0.26 2.98 16 16 O -0.22 -5.29 8.59 0.05 0.00 -5.29 16 17 C -0.39 -10.45 9.95 30.89 0.31 -10.14 16 18 H 0.11 2.90 5.44 -52.49 -0.29 2.61 16 19 C 0.06 1.70 5.49 -17.52 -0.10 1.60 16 20 N -0.88 -24.40 13.96 55.48 0.77 -23.63 16 21 Si 0.91 20.54 28.62 -169.99 -4.86 15.68 16 22 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.26 -5.84 7.11 56.52 0.40 -5.44 16 25 C -0.17 -2.93 9.65 -39.40 -0.38 -3.31 16 26 H 0.12 0.03 8.14 -51.93 -0.42 -0.40 16 27 H 0.12 0.04 8.14 -51.93 -0.42 -0.38 16 28 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.14 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.14 0.22 8.14 -51.92 -0.42 -0.20 16 32 H 0.42 3.92 8.61 -34.47 -0.30 3.63 16 33 H 0.09 0.77 7.64 -51.93 -0.40 0.37 16 34 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 35 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 36 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 37 H 0.13 2.81 5.64 -52.49 -0.30 2.52 16 38 H 0.28 7.20 8.31 -40.82 -0.34 6.86 16 39 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 359.23 15.07 5.41 5.41 Total: -1.00 -35.74 359.23 -7.79 -43.53 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -4.63 Total: 1.20 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: -2.56 Total: -19.82 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 1.49 Total: -37.28 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -2.05 Total: -29.37 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.86 Total: 15.68 kcal Atomic # 16 Polarization: 21.24 SS G_CDS: -0.59 Total: 20.65 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.74 -7.79 -43.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113303591.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.237 kcal (2) G-P(sol) polarization free energy of solvation -35.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds