Wall clock time and date at job start Tue Mar 31 2020 13:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30218 * 126.78583 * 2 1 4 4 O 1.20916 * 111.64299 * 180.28712 * 3 2 1 5 5 C 1.34069 * 111.55280 * 359.70457 * 4 3 2 6 6 Cl 1.73597 * 126.79492 * 180.02562 * 5 4 3 7 7 C 1.35669 * 106.40720 * 0.02562 * 5 4 3 8 8 C 1.50702 * 128.01674 * 180.02562 * 7 5 4 9 9 C 1.50704 * 109.47115 * 90.01872 * 8 7 5 10 10 O 1.21297 * 119.99886 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00092 * 180.02562 * 9 8 7 12 12 C 1.40151 * 120.00099 * 180.02562 * 11 9 8 13 13 C 1.40416 * 125.97476 * 0.02562 * 12 11 9 14 14 C 1.35237 * 107.86796 * 179.97438 * 13 12 11 15 15 N 1.34970 * 107.85941 * 0.26441 * 14 13 12 16 16 C 1.46504 * 125.96940 * 179.73198 * 15 14 13 17 17 C 1.50699 * 109.46610 * 125.00265 * 16 15 14 18 18 H 1.08001 * 120.00250 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00163 * 179.97438 * 17 16 15 20 20 N 1.31523 * 119.99479 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00617 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46913 * 59.99694 * 21 19 17 23 23 H 1.48497 * 109.47477 * 179.97438 * 21 19 17 24 24 H 1.48507 * 109.46927 * 300.00226 * 21 19 17 25 25 N 1.31213 * 125.97528 * 180.02562 * 12 11 9 26 26 H 1.08998 * 109.47202 * 270.19577 * 1 2 3 27 27 H 1.09005 * 109.47183 * 30.19604 * 1 2 3 28 28 H 1.09003 * 109.47055 * 150.19534 * 1 2 3 29 29 H 1.08999 * 109.46960 * 330.02028 * 8 7 5 30 30 H 1.08996 * 109.47368 * 210.02133 * 8 7 5 31 31 H 0.96994 * 119.99525 * 0.02562 * 11 9 8 32 32 H 1.08000 * 126.06023 * 359.97438 * 13 12 11 33 33 H 1.08002 * 126.06518 * 179.97438 * 14 13 12 34 34 H 1.08998 * 109.46990 * 244.99353 * 16 15 14 35 35 H 1.08992 * 109.47218 * 5.00271 * 16 15 14 36 36 H 0.97001 * 119.99807 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0429 0.0000 4 8 3.4539 0.7270 -0.0056 5 6 3.6036 -0.6053 -0.0038 6 17 5.1011 -1.4833 -0.0095 7 6 2.3531 -1.1314 0.0034 8 6 1.9580 -2.5857 0.0086 9 6 1.8326 -3.0670 1.4312 10 8 2.0429 -2.3040 2.3504 11 7 1.4868 -4.3453 1.6822 12 6 1.3697 -4.7928 3.0051 13 6 1.5821 -4.0210 4.1588 14 6 1.3700 -4.8141 5.2335 15 7 1.0418 -6.0432 4.7825 16 6 0.7354 -7.2109 5.6126 17 6 -0.6157 -7.7581 5.2305 18 1 -1.1891 -7.2834 4.4480 19 6 -1.1200 -8.8649 5.8798 20 7 -0.4216 -9.4434 6.8324 21 14 -2.7951 -9.5429 5.4068 22 1 -2.7818 -9.9413 3.9763 23 1 -3.1051 -10.7273 6.2472 24 1 -3.8298 -8.4993 5.6204 25 7 1.0424 -6.0062 3.3823 26 1 -0.3633 0.0035 1.0276 27 1 -0.3634 0.8883 -0.5169 28 1 -0.3633 -0.8918 -0.5108 29 1 2.7194 -3.1709 -0.5071 30 1 1.0017 -2.7043 -0.5007 31 1 1.3191 -4.9555 0.9471 32 1 1.8646 -2.9789 4.1834 33 1 1.4536 -4.5179 6.2687 34 1 1.4950 -7.9769 5.4565 35 1 0.7251 -6.9178 6.6623 36 1 -0.7761 -10.2223 7.2890 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117854725.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:15 Heat of formation + Delta-G solvation = 106.787267 kcal Electronic energy + Delta-G solvation = -23868.932101 eV Core-core repulsion = 19998.952215 eV Total energy + Delta-G solvation = -3869.979886 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -45.35271 -40.74622 -39.39196 -37.54080 -35.72780 -34.78374 -33.41397 -32.76182 -31.09595 -29.49946 -29.29836 -28.82951 -26.62257 -23.58370 -22.61761 -21.82402 -21.35992 -20.23817 -19.62329 -18.17692 -18.03722 -16.97179 -16.66904 -16.54818 -16.03364 -15.42142 -15.17090 -14.47085 -14.13234 -14.07747 -13.81383 -13.65903 -13.43071 -13.02489 -12.84735 -12.71379 -12.61344 -12.36446 -12.27369 -12.18447 -11.78693 -11.23025 -11.09397 -10.89150 -10.50638 -10.33854 -10.28132 -10.07220 -9.74529 -9.55254 -9.47845 -8.65888 -8.18588 -7.52531 -6.27180 -4.32580 0.72603 0.90961 1.71455 2.22280 2.74004 2.87620 3.23144 3.26232 3.26790 3.30863 3.64162 3.69846 3.84248 4.16702 4.29253 4.43690 4.44958 4.71445 4.99464 5.07964 5.13891 5.19369 5.28594 5.35015 5.51516 5.74630 5.75648 6.20127 6.44167 6.54767 6.82267 7.01754 7.33839 7.50834 7.67388 7.76031 7.85134 8.00011 8.15084 8.58320 8.76367 9.33133 10.81577 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.023721 B = 0.002495 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.114712 B =11220.362238 C =11735.528338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.047 3.953 3 N -0.348 5.348 4 O 0.110 5.890 5 C 0.017 3.983 6 Cl 0.051 6.949 7 C -0.152 4.152 8 C -0.063 4.063 9 C 0.520 3.480 10 O -0.507 6.507 11 N -0.629 5.629 12 C 0.256 3.744 13 C -0.287 4.287 14 C 0.052 3.948 15 N -0.318 5.318 16 C 0.258 3.742 17 C -0.530 4.530 18 H 0.068 0.932 19 C 0.062 3.938 20 N -0.895 5.895 21 Si 0.908 3.092 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.275 1.275 25 N -0.303 5.303 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.115 0.885 30 H 0.118 0.882 31 H 0.412 0.588 32 H 0.159 0.841 33 H 0.168 0.832 34 H 0.045 0.955 35 H 0.057 0.943 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.576 15.812 -15.899 23.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.112 4.112 3 N -0.054 5.054 4 O 0.044 5.956 5 C -0.074 4.074 6 Cl 0.079 6.921 7 C -0.157 4.157 8 C -0.103 4.103 9 C 0.305 3.695 10 O -0.380 6.380 11 N -0.277 5.277 12 C 0.003 3.997 13 C -0.318 4.318 14 C -0.098 4.098 15 N -0.100 5.100 16 C 0.141 3.859 17 C -0.568 4.568 18 H 0.087 0.913 19 C -0.141 4.141 20 N -0.533 5.533 21 Si 0.735 3.265 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.200 1.200 25 N -0.134 5.134 26 H 0.107 0.893 27 H 0.099 0.901 28 H 0.103 0.897 29 H 0.133 0.867 30 H 0.136 0.864 31 H 0.247 0.753 32 H 0.176 0.824 33 H 0.185 0.815 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.315 16.178 -15.403 23.214 hybrid contribution -0.527 -0.942 -0.145 1.089 sum 5.787 15.237 -15.548 22.526 Atomic orbital electron populations 1.20260 0.85129 1.04000 1.04293 1.23251 0.99117 0.87627 1.01157 1.73931 0.88442 1.22812 1.20250 1.84914 1.22178 1.20467 1.68014 1.24502 0.90893 0.85042 1.06934 1.98466 1.28163 1.68875 1.96607 1.20003 0.90154 0.96585 1.08973 1.19910 1.05485 0.89901 0.95027 1.20294 0.77096 0.81075 0.91055 1.90683 1.47459 1.54209 1.45630 1.42389 1.68221 1.11678 1.05392 1.19080 1.02810 0.92966 0.84859 1.21508 1.18781 1.02382 0.89144 1.22570 1.01161 0.86124 0.99994 1.49097 1.48410 1.09968 1.02496 1.19752 0.97893 0.80055 0.88207 1.21211 1.01668 1.13262 1.20695 0.91346 1.24948 0.98378 0.96078 0.94647 1.69911 1.38158 1.21758 1.23511 0.86380 0.83086 0.78324 0.78668 1.19916 1.21026 1.20028 1.77328 1.26743 1.16901 0.92428 0.89315 0.90077 0.89689 0.86737 0.86363 0.75296 0.82371 0.81500 0.93686 0.92528 0.92234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.39 36.00 0.37 -0.23 16 2 C 0.05 0.50 7.32 -82.12 -0.60 -0.10 16 3 N -0.35 -4.21 12.07 33.43 0.40 -3.80 16 4 O 0.11 1.28 11.20 17.10 0.19 1.47 16 5 C 0.02 0.17 8.12 29.81 0.24 0.42 16 6 Cl 0.05 0.45 29.23 -51.86 -1.52 -1.06 16 7 C -0.15 -1.53 4.82 -104.39 -0.50 -2.03 16 8 C -0.06 -0.50 6.10 -29.03 -0.18 -0.68 16 9 C 0.52 6.56 7.79 -10.98 -0.09 6.47 16 10 O -0.51 -8.26 13.17 5.54 0.07 -8.19 16 11 N -0.63 -8.67 5.45 -11.13 -0.06 -8.73 16 12 C 0.26 4.87 8.11 -154.40 -1.25 3.61 16 13 C -0.29 -5.51 9.61 -39.83 -0.38 -5.89 16 14 C 0.05 1.01 11.44 -17.24 -0.20 0.81 16 15 N -0.32 -7.22 3.67 -62.56 -0.23 -7.45 16 16 C 0.26 6.46 6.26 -5.19 -0.03 6.42 16 17 C -0.53 -14.50 9.23 -34.44 -0.32 -14.82 16 18 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 20 N -0.90 -25.04 13.29 55.43 0.74 -24.31 16 21 Si 0.91 21.01 29.54 -169.99 -5.02 15.99 16 22 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 25 N -0.30 -6.72 12.42 31.44 0.39 -6.33 16 26 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.46 7.65 -51.93 -0.40 0.06 16 29 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.12 0.58 7.65 -51.93 -0.40 0.19 16 31 H 0.41 4.33 8.82 -40.82 -0.36 3.97 16 32 H 0.16 2.98 5.91 -52.49 -0.31 2.66 16 33 H 0.17 2.68 8.06 -52.49 -0.42 2.25 16 34 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.06 1.39 8.07 -51.93 -0.42 0.97 16 36 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 340.84 15.07 5.14 5.14 Total: -1.00 -33.27 340.84 -6.47 -39.74 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -3.54 Total: 1.95 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -3.03 Total: -4.42 kcal Atomic # 7 Polarization: -51.86 SS G_CDS: 1.24 Total: -50.62 kcal Atomic # 8 Polarization: -6.98 SS G_CDS: 0.26 Total: -6.71 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 17 Polarization: 0.45 SS G_CDS: -1.52 Total: -1.06 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.27 -6.47 -39.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117854725.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.529 kcal (2) G-P(sol) polarization free energy of solvation -33.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds