Wall clock time and date at job start Tue Mar 31 2020 13:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30218 * 126.78583 * 2 1 4 4 O 1.20916 * 111.64299 * 180.28712 * 3 2 1 5 5 C 1.34069 * 111.55280 * 359.70457 * 4 3 2 6 6 Cl 1.73597 * 126.79492 * 180.02562 * 5 4 3 7 7 C 1.35669 * 106.40720 * 0.02562 * 5 4 3 8 8 C 1.50702 * 128.01674 * 180.02562 * 7 5 4 9 9 C 1.50704 * 109.47115 * 90.01872 * 8 7 5 10 10 O 1.21297 * 119.99886 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00092 * 180.02562 * 9 8 7 12 12 C 1.40151 * 120.00099 * 180.02562 * 11 9 8 13 13 C 1.40416 * 125.97476 * 0.02562 * 12 11 9 14 14 C 1.35237 * 107.86796 * 179.97438 * 13 12 11 15 15 N 1.34970 * 107.85941 * 0.26441 * 14 13 12 16 16 C 1.46504 * 125.96940 * 179.73198 * 15 14 13 17 17 C 1.50699 * 109.46610 * 125.00265 * 16 15 14 18 18 H 1.08001 * 120.00250 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00163 * 179.97438 * 17 16 15 20 20 N 1.31523 * 119.99479 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00617 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46913 * 59.99694 * 21 19 17 23 23 H 1.48497 * 109.47477 * 179.97438 * 21 19 17 24 24 H 1.48507 * 109.46927 * 300.00226 * 21 19 17 25 25 N 1.31213 * 125.97528 * 180.02562 * 12 11 9 26 26 H 1.08998 * 109.47202 * 270.19577 * 1 2 3 27 27 H 1.09005 * 109.47183 * 30.19604 * 1 2 3 28 28 H 1.09003 * 109.47055 * 150.19534 * 1 2 3 29 29 H 1.08999 * 109.46960 * 330.02028 * 8 7 5 30 30 H 1.08996 * 109.47368 * 210.02133 * 8 7 5 31 31 H 0.96994 * 119.99525 * 0.02562 * 11 9 8 32 32 H 1.08000 * 126.06023 * 359.97438 * 13 12 11 33 33 H 1.08002 * 126.06518 * 179.97438 * 14 13 12 34 34 H 1.08998 * 109.46990 * 244.99353 * 16 15 14 35 35 H 1.08992 * 109.47218 * 5.00271 * 16 15 14 36 36 H 0.97001 * 119.99807 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0429 0.0000 4 8 3.4539 0.7270 -0.0056 5 6 3.6036 -0.6053 -0.0038 6 17 5.1011 -1.4833 -0.0095 7 6 2.3531 -1.1314 0.0034 8 6 1.9580 -2.5857 0.0086 9 6 1.8326 -3.0670 1.4312 10 8 2.0429 -2.3040 2.3504 11 7 1.4868 -4.3453 1.6822 12 6 1.3697 -4.7928 3.0051 13 6 1.5821 -4.0210 4.1588 14 6 1.3700 -4.8141 5.2335 15 7 1.0418 -6.0432 4.7825 16 6 0.7354 -7.2109 5.6126 17 6 -0.6157 -7.7581 5.2305 18 1 -1.1891 -7.2834 4.4480 19 6 -1.1200 -8.8649 5.8798 20 7 -0.4216 -9.4434 6.8324 21 14 -2.7951 -9.5429 5.4068 22 1 -2.7818 -9.9413 3.9763 23 1 -3.1051 -10.7273 6.2472 24 1 -3.8298 -8.4993 5.6204 25 7 1.0424 -6.0062 3.3823 26 1 -0.3633 0.0035 1.0276 27 1 -0.3634 0.8883 -0.5169 28 1 -0.3633 -0.8918 -0.5108 29 1 2.7194 -3.1709 -0.5071 30 1 1.0017 -2.7043 -0.5007 31 1 1.3191 -4.9555 0.9471 32 1 1.8646 -2.9789 4.1834 33 1 1.4536 -4.5179 6.2687 34 1 1.4950 -7.9769 5.4565 35 1 0.7251 -6.9178 6.6623 36 1 -0.7761 -10.2223 7.2890 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117854725.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:15 Heat of formation + Delta-G solvation = 85.636101 kcal Electronic energy + Delta-G solvation = -23869.849284 eV Core-core repulsion = 19998.952215 eV Total energy + Delta-G solvation = -3870.897069 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -46.14772 -42.19242 -40.60340 -38.28520 -36.58188 -36.09258 -35.25587 -33.60655 -32.75064 -30.96609 -30.24826 -29.58538 -28.39702 -25.17445 -23.87582 -22.64931 -22.48199 -21.69737 -20.90423 -19.02453 -18.85573 -18.66573 -18.21735 -17.80612 -17.09754 -16.83846 -16.24772 -16.16121 -15.53916 -15.23050 -14.78715 -14.48362 -14.27979 -14.24033 -14.11534 -13.80737 -13.70853 -13.63502 -13.46432 -13.15173 -12.95374 -12.86514 -12.70164 -12.27011 -12.05680 -11.95839 -11.60844 -11.38528 -11.14199 -10.86528 -10.70922 -10.32049 -9.74080 -9.10714 -8.32055 -6.46422 -0.04155 0.12245 0.91872 0.96620 1.39049 1.41605 1.44715 1.49099 1.52058 2.25335 2.31597 2.42804 2.53648 2.98992 2.99978 3.45465 3.59668 3.74767 3.88246 4.06550 4.29264 4.41439 4.54071 4.61691 4.69115 4.78517 4.81447 4.91085 4.94210 5.03830 5.17515 5.18554 5.57427 5.80802 5.95687 6.25897 6.31928 6.65469 6.97253 7.01615 7.16336 7.23701 8.75448 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.023721 B = 0.002495 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.114712 B =11220.362238 C =11735.528338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.044 3.956 3 N -0.374 5.374 4 O 0.095 5.905 5 C 0.010 3.990 6 Cl 0.061 6.939 7 C -0.157 4.157 8 C -0.053 4.053 9 C 0.523 3.477 10 O -0.544 6.544 11 N -0.621 5.621 12 C 0.268 3.732 13 C -0.293 4.293 14 C 0.053 3.947 15 N -0.344 5.344 16 C 0.273 3.727 17 C -0.548 4.548 18 H 0.055 0.945 19 C 0.018 3.982 20 N -0.922 5.922 21 Si 0.972 3.028 22 H -0.271 1.271 23 H -0.275 1.275 24 H -0.269 1.269 25 N -0.343 5.343 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.112 0.888 29 H 0.144 0.856 30 H 0.159 0.841 31 H 0.428 0.572 32 H 0.165 0.835 33 H 0.197 0.803 34 H 0.021 0.979 35 H 0.056 0.944 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.662 15.967 -17.488 24.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.114 4.114 3 N -0.084 5.084 4 O 0.032 5.968 5 C -0.080 4.080 6 Cl 0.090 6.910 7 C -0.162 4.162 8 C -0.093 4.093 9 C 0.311 3.689 10 O -0.419 6.419 11 N -0.271 5.271 12 C 0.013 3.987 13 C -0.324 4.324 14 C -0.095 4.095 15 N -0.126 5.126 16 C 0.154 3.846 17 C -0.586 4.586 18 H 0.073 0.927 19 C -0.183 4.183 20 N -0.561 5.561 21 Si 0.796 3.204 22 H -0.196 1.196 23 H -0.200 1.200 24 H -0.194 1.194 25 N -0.174 5.174 26 H 0.100 0.900 27 H 0.108 0.892 28 H 0.130 0.870 29 H 0.162 0.838 30 H 0.177 0.823 31 H 0.267 0.733 32 H 0.182 0.818 33 H 0.214 0.786 34 H 0.039 0.961 35 H 0.074 0.926 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.428 16.343 -17.028 24.218 hybrid contribution -0.152 -0.872 0.303 0.935 sum 5.276 15.472 -16.726 23.387 Atomic orbital electron populations 1.20426 0.83263 1.05875 1.04308 1.23796 1.00374 0.87416 0.99843 1.73931 0.88805 1.23929 1.21715 1.84878 1.22252 1.21161 1.68555 1.24793 0.91735 0.84900 1.06621 1.98469 1.27609 1.68431 1.96529 1.20275 0.89777 0.97448 1.08743 1.20057 1.08684 0.88645 0.91884 1.21149 0.75235 0.79928 0.92629 1.90670 1.48848 1.54996 1.47371 1.42543 1.68142 1.12616 1.03790 1.19432 1.00272 0.91882 0.87110 1.21683 1.18872 1.02544 0.89296 1.23137 0.99676 0.85005 1.01721 1.48828 1.50704 1.10225 1.02876 1.19319 0.96235 0.80519 0.88528 1.21382 1.02686 1.13885 1.20627 0.92714 1.25758 1.01937 0.96134 0.94426 1.69996 1.39722 1.22150 1.24206 0.85396 0.78677 0.77905 0.78452 1.19608 1.19996 1.19437 1.77249 1.29060 1.18744 0.92329 0.90029 0.89178 0.86985 0.83787 0.82319 0.73324 0.81785 0.78642 0.96086 0.92619 0.91859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.04 10.39 71.24 0.74 -0.30 16 2 C 0.04 0.86 7.32 43.55 0.32 1.18 16 3 N -0.37 -8.82 12.07 -49.44 -0.60 -9.41 16 4 O 0.09 2.17 11.20 71.37 0.80 2.97 16 5 C 0.01 0.19 8.12 67.22 0.55 0.74 16 6 Cl 0.06 1.00 29.23 -2.72 -0.08 0.92 16 7 C -0.16 -2.80 4.82 -19.71 -0.10 -2.89 16 8 C -0.05 -0.65 6.10 29.10 0.18 -0.47 16 9 C 0.52 11.85 7.79 87.66 0.68 12.53 16 10 O -0.54 -16.85 13.17 -3.08 -0.04 -16.89 16 11 N -0.62 -15.73 5.45 -307.50 -1.68 -17.41 16 12 C 0.27 9.92 8.11 133.33 1.08 11.01 16 13 C -0.29 -11.00 9.61 22.11 0.21 -10.79 16 14 C 0.05 2.06 11.44 83.52 0.96 3.01 16 15 N -0.34 -15.80 3.67 -351.85 -1.29 -17.09 16 16 C 0.27 13.96 6.26 85.63 0.54 14.50 16 17 C -0.55 -30.37 9.23 25.60 0.24 -30.13 16 18 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 19 C 0.02 0.97 5.46 84.65 0.46 1.43 16 20 N -0.92 -51.82 13.29 21.45 0.28 -51.54 16 21 Si 0.97 42.72 29.54 68.60 2.03 44.75 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 23 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 24 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 25 N -0.34 -15.21 12.42 -54.45 -0.68 -15.89 16 26 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 28 H 0.11 0.78 7.65 -2.39 -0.02 0.77 16 29 H 0.14 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.16 0.73 7.65 -2.39 -0.02 0.72 16 31 H 0.43 7.84 8.82 -92.71 -0.82 7.03 16 32 H 0.16 6.02 5.91 -2.91 -0.02 6.00 16 33 H 0.20 6.08 8.06 -2.91 -0.02 6.06 16 34 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.06 2.81 8.07 -2.39 -0.02 2.79 16 36 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -73.12 340.84 4.94 -68.18 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: 0.34 Total: 11.61 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: 5.85 Total: -0.20 kcal Atomic # 7 Polarization: -107.38 SS G_CDS: -3.95 Total: -111.34 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: 0.76 Total: -13.92 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Atomic # 17 Polarization: 1.00 SS G_CDS: -0.08 Total: 0.92 kcal Total: -73.12 4.94 -68.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117854725.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.818 kcal (2) G-P(sol) polarization free energy of solvation -73.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds