Wall clock time and date at job start Tue Mar 31 2020 13:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47595 * 71.28506 * 3 2 1 5 5 C 1.52995 * 109.47600 * 180.02562 * 4 3 2 6 6 C 1.52990 * 109.47353 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.47398 * 179.97438 * 6 5 4 8 8 O 1.21293 * 119.99482 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00290 * 180.02562 * 7 6 5 10 10 C 1.38892 * 119.99668 * 180.27660 * 9 7 6 11 11 N 1.29946 * 125.36003 * 179.72060 * 10 9 7 12 12 C 1.31593 * 117.13738 * 179.97438 * 11 10 9 13 13 C 1.50698 * 122.23344 * 179.97438 * 12 11 10 14 14 C 1.34660 * 115.53858 * 0.02562 * 12 11 10 15 15 S 1.76199 * 125.93193 * 179.97438 * 14 12 11 16 16 C 1.76192 * 99.99981 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00141 * 0.02562 * 16 15 14 18 18 C 1.38437 * 120.00107 * 180.02562 * 16 15 14 19 19 N 1.31807 * 120.00163 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 119.99537 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47241 * 90.00370 * 20 18 16 22 22 H 1.48510 * 109.47200 * 210.00213 * 20 18 16 23 23 H 1.48497 * 109.47709 * 330.00146 * 20 18 16 24 24 S 1.76140 * 125.36676 * 359.41382 * 10 9 7 25 25 H 4.44656 * 5.63388 * 180.02562 * 4 1 2 26 26 H 1.08998 * 109.47034 * 311.27953 * 3 2 1 27 27 H 1.09005 * 109.46604 * 191.28084 * 3 2 1 28 28 H 1.08999 * 109.46950 * 59.99343 * 4 3 2 29 29 H 1.09003 * 109.46788 * 300.00417 * 4 3 2 30 30 H 1.08998 * 109.47142 * 59.99377 * 5 4 3 31 31 H 1.09011 * 109.46657 * 299.99934 * 5 4 3 32 32 H 1.08998 * 109.47508 * 59.99597 * 6 5 4 33 33 H 1.09002 * 109.47337 * 299.99883 * 6 5 4 34 34 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 35 35 H 1.09005 * 109.47133 * 90.02633 * 13 12 11 36 36 H 1.09000 * 109.47697 * 210.02776 * 13 12 11 37 37 H 1.09005 * 109.46895 * 330.03461 * 13 12 11 38 38 H 0.96999 * 119.99661 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1563 -0.4619 -1.3662 5 6 4.6863 -0.4619 -1.3660 6 6 5.1965 -0.9238 -2.7323 7 6 6.7036 -0.9232 -2.7323 8 8 7.3098 -0.5858 -1.7374 9 7 7.3777 -1.2964 -3.8381 10 6 8.7666 -1.3012 -3.8361 11 7 9.5188 -1.6454 -4.8382 12 6 10.8212 -1.5888 -4.6584 13 6 11.7992 -1.9623 -5.7423 14 6 11.2217 -1.1759 -3.4408 15 16 12.8913 -1.0004 -2.9060 16 6 12.6270 -0.4373 -1.2575 17 1 11.6212 -0.3070 -0.8861 18 6 13.7084 -0.1619 -0.4383 19 7 13.5107 0.2599 0.7947 20 14 15.4479 -0.3880 -1.0805 21 1 15.9141 0.8771 -1.7030 22 1 16.3482 -0.7472 0.0446 23 1 15.4645 -1.4736 -2.0936 24 16 9.7858 -0.8345 -2.4775 25 1 -1.0499 0.0001 -0.0003 26 1 3.0096 -0.6772 0.7723 27 1 3.0088 1.0087 0.2010 28 1 2.7926 0.2159 -2.1384 29 1 2.7934 -1.4699 -1.5673 30 1 5.0496 -1.1399 -0.5937 31 1 5.0495 0.5461 -1.1646 32 1 4.8333 -0.2454 -3.5042 33 1 4.8333 -1.9315 -2.9341 34 1 6.8928 -1.5658 -4.6338 35 1 12.0390 -1.0797 -6.3353 36 1 12.7102 -2.3548 -5.2903 37 1 11.3559 -2.7226 -6.3854 38 1 14.2685 0.4525 1.3687 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119885543.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:29 Heat of formation + Delta-G solvation = 33.953253 kcal Electronic energy + Delta-G solvation = -20990.638642 eV Core-core repulsion = 17665.837358 eV Total energy + Delta-G solvation = -3324.801285 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.20955 -38.65552 -36.46565 -34.78273 -33.48196 -32.75423 -30.89681 -29.97945 -27.18135 -25.93121 -25.84903 -23.35765 -21.60627 -20.96799 -19.71585 -18.37916 -18.00903 -17.65835 -16.65569 -16.42338 -15.81171 -15.34864 -15.28409 -14.69902 -14.55410 -14.30001 -14.00468 -13.45466 -13.21927 -13.19384 -12.77886 -12.26343 -12.17232 -11.97671 -11.92918 -11.58260 -11.55858 -11.34888 -11.29260 -10.97457 -10.82853 -10.61904 -10.46547 -10.36945 -10.13747 -9.89729 -9.45985 -9.16479 -8.85452 -8.77196 -7.88683 -6.72682 -6.55540 -4.28690 1.31595 1.80295 2.44814 2.46069 2.51892 2.56154 2.77338 2.93096 3.10390 3.19960 3.37945 3.53309 4.03068 4.04353 4.45127 4.48798 4.59459 4.63681 4.84335 4.96987 4.98888 5.13085 5.18421 5.33938 5.43098 5.49323 5.69052 5.75033 5.85917 5.94029 6.04130 6.10305 6.12151 6.34379 6.41086 6.88081 7.13232 7.33282 7.67427 7.96953 8.24066 8.42865 8.84219 10.52357 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.016851 B = 0.002674 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.263061 B =10467.453852 C =12092.333728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.182 4.182 3 C -0.017 4.017 4 C -0.113 4.113 5 C -0.109 4.109 6 C -0.130 4.130 7 C 0.502 3.498 8 O -0.501 6.501 9 N -0.619 5.619 10 C 0.193 3.807 11 N -0.483 5.483 12 C 0.031 3.969 13 C -0.063 4.063 14 C -0.240 4.240 15 S 0.053 5.947 16 C -0.544 4.544 17 H 0.105 0.895 18 C 0.101 3.899 19 N -0.857 5.857 20 Si 0.852 3.148 21 H -0.261 1.261 22 H -0.265 1.265 23 H -0.236 1.236 24 S 0.231 5.769 25 H 0.215 0.785 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.415 0.585 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.236 -2.561 -7.369 19.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.182 4.182 3 C -0.053 4.053 4 C -0.151 4.151 5 C -0.147 4.147 6 C -0.170 4.170 7 C 0.288 3.712 8 O -0.375 6.375 9 N -0.268 5.268 10 C -0.178 4.178 11 N -0.204 5.204 12 C -0.111 4.111 13 C -0.123 4.123 14 C -0.476 4.476 15 S 0.300 5.700 16 C -0.693 4.693 17 H 0.122 0.878 18 C -0.110 4.110 19 N -0.491 5.491 20 Si 0.676 3.324 21 H -0.186 1.186 22 H -0.190 1.190 23 H -0.160 1.160 24 S 0.477 5.523 25 H 0.232 0.768 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.252 0.748 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.030 -2.212 -6.356 18.311 hybrid contribution -0.379 -0.145 -0.480 0.628 sum -17.408 -2.357 -6.836 18.850 Atomic orbital electron populations 1.24905 0.95996 1.01595 1.01069 1.23244 0.94669 1.00049 1.00250 1.18786 0.84447 1.03305 0.98804 1.21539 0.95128 1.02071 0.96318 1.21402 0.94047 1.03587 0.95638 1.21601 0.89733 1.04556 1.01067 1.21065 0.90956 0.77113 0.82060 1.90734 1.69178 1.45390 1.32199 1.42541 1.02200 1.65368 1.16684 1.24029 0.88589 1.08532 0.96618 1.65876 1.04463 1.20657 1.29438 1.19112 0.88610 1.08761 0.94639 1.20146 0.95905 1.01029 0.95185 1.28170 1.06014 1.11859 1.01568 1.82454 0.96062 1.76808 1.14634 1.22660 0.98745 1.52140 0.95743 0.87758 1.24748 0.99324 0.92827 0.94124 1.70009 1.32568 1.40421 1.06069 0.86809 0.83913 0.81038 0.80638 1.18563 1.18989 1.16009 1.86179 0.91252 1.63844 1.11042 0.76781 0.89235 0.89236 0.91408 0.91413 0.90424 0.90432 0.88274 0.88271 0.74797 0.91718 0.91096 0.91735 0.91319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -1.73 19.25 29.55 0.57 -1.16 16 2 C -0.18 -1.61 13.34 -37.12 -0.50 -2.10 16 3 C -0.02 -0.12 5.70 -29.52 -0.17 -0.29 16 4 C -0.11 -0.74 5.17 -26.73 -0.14 -0.88 16 5 C -0.11 -0.89 4.50 -26.74 -0.12 -1.01 16 6 C -0.13 -0.99 5.70 -27.89 -0.16 -1.15 16 7 C 0.50 6.57 7.79 -10.98 -0.09 6.48 16 8 O -0.50 -8.81 13.50 5.55 0.07 -8.74 16 9 N -0.62 -8.44 5.40 -11.78 -0.06 -8.51 16 10 C 0.19 3.59 8.40 -87.19 -0.73 2.86 16 11 N -0.48 -9.37 10.55 -9.78 -0.10 -9.47 16 12 C 0.03 0.62 6.73 -83.96 -0.57 0.06 16 13 C -0.06 -1.05 10.02 36.00 0.36 -0.69 16 14 C -0.24 -5.43 6.67 29.47 0.20 -5.23 16 15 S 0.05 1.27 18.70 -107.50 -2.01 -0.74 16 16 C -0.54 -15.16 9.80 30.81 0.30 -14.86 16 17 H 0.10 3.11 6.21 -52.49 -0.33 2.79 16 18 C 0.10 2.80 5.49 -17.49 -0.10 2.70 16 19 N -0.86 -24.74 13.98 55.47 0.78 -23.97 16 20 Si 0.85 19.68 27.73 -169.99 -4.71 14.96 16 21 H -0.26 -5.92 7.11 56.52 0.40 -5.52 16 22 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.24 -5.21 6.73 56.52 0.38 -4.83 16 24 S 0.23 5.11 18.35 -107.50 -1.97 3.13 16 25 H 0.22 0.98 7.80 -54.09 -0.42 0.56 16 26 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 31 H 0.08 0.72 8.10 -51.92 -0.42 0.30 16 32 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.41 4.10 8.82 -40.82 -0.36 3.74 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 1.16 7.37 -51.93 -0.38 0.78 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.28 7.32 8.32 -40.82 -0.34 6.98 16 LS Contribution 357.60 15.07 5.39 5.39 Total: -1.00 -33.29 357.60 -8.63 -41.92 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -4.87 Total: 1.27 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: -1.13 Total: -15.26 kcal Atomic # 7 Polarization: -42.55 SS G_CDS: 0.61 Total: -41.94 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.07 Total: -8.74 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -4.71 Total: 14.96 kcal Atomic # 16 Polarization: 6.38 SS G_CDS: -3.98 Total: 2.39 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.29 -8.63 -41.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119885543.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.874 kcal (2) G-P(sol) polarization free energy of solvation -33.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds