Wall clock time and date at job start Tue Mar 31 2020 13:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47595 * 71.28506 * 3 2 1 5 5 C 1.52995 * 109.47600 * 180.02562 * 4 3 2 6 6 C 1.52990 * 109.47353 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.47398 * 179.97438 * 6 5 4 8 8 O 1.21293 * 119.99482 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00290 * 180.02562 * 7 6 5 10 10 C 1.38892 * 119.99668 * 180.27660 * 9 7 6 11 11 N 1.29946 * 125.36003 * 179.72060 * 10 9 7 12 12 C 1.31593 * 117.13738 * 179.97438 * 11 10 9 13 13 C 1.50698 * 122.23344 * 179.97438 * 12 11 10 14 14 C 1.34660 * 115.53858 * 0.02562 * 12 11 10 15 15 S 1.76199 * 125.93193 * 179.97438 * 14 12 11 16 16 C 1.76192 * 99.99981 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00141 * 0.02562 * 16 15 14 18 18 C 1.38437 * 120.00107 * 180.02562 * 16 15 14 19 19 N 1.31807 * 120.00163 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 119.99537 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47241 * 90.00370 * 20 18 16 22 22 H 1.48510 * 109.47200 * 210.00213 * 20 18 16 23 23 H 1.48497 * 109.47709 * 330.00146 * 20 18 16 24 24 S 1.76140 * 125.36676 * 359.41382 * 10 9 7 25 25 H 4.44656 * 5.63388 * 180.02562 * 4 1 2 26 26 H 1.08998 * 109.47034 * 311.27953 * 3 2 1 27 27 H 1.09005 * 109.46604 * 191.28084 * 3 2 1 28 28 H 1.08999 * 109.46950 * 59.99343 * 4 3 2 29 29 H 1.09003 * 109.46788 * 300.00417 * 4 3 2 30 30 H 1.08998 * 109.47142 * 59.99377 * 5 4 3 31 31 H 1.09011 * 109.46657 * 299.99934 * 5 4 3 32 32 H 1.08998 * 109.47508 * 59.99597 * 6 5 4 33 33 H 1.09002 * 109.47337 * 299.99883 * 6 5 4 34 34 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 35 35 H 1.09005 * 109.47133 * 90.02633 * 13 12 11 36 36 H 1.09000 * 109.47697 * 210.02776 * 13 12 11 37 37 H 1.09005 * 109.46895 * 330.03461 * 13 12 11 38 38 H 0.96999 * 119.99661 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1563 -0.4619 -1.3662 5 6 4.6863 -0.4619 -1.3660 6 6 5.1965 -0.9238 -2.7323 7 6 6.7036 -0.9232 -2.7323 8 8 7.3098 -0.5858 -1.7374 9 7 7.3777 -1.2964 -3.8381 10 6 8.7666 -1.3012 -3.8361 11 7 9.5188 -1.6454 -4.8382 12 6 10.8212 -1.5888 -4.6584 13 6 11.7992 -1.9623 -5.7423 14 6 11.2217 -1.1759 -3.4408 15 16 12.8913 -1.0004 -2.9060 16 6 12.6270 -0.4373 -1.2575 17 1 11.6212 -0.3070 -0.8861 18 6 13.7084 -0.1619 -0.4383 19 7 13.5107 0.2599 0.7947 20 14 15.4479 -0.3880 -1.0805 21 1 15.9141 0.8771 -1.7030 22 1 16.3482 -0.7472 0.0446 23 1 15.4645 -1.4736 -2.0936 24 16 9.7858 -0.8345 -2.4775 25 1 -1.0499 0.0001 -0.0003 26 1 3.0096 -0.6772 0.7723 27 1 3.0088 1.0087 0.2010 28 1 2.7926 0.2159 -2.1384 29 1 2.7934 -1.4699 -1.5673 30 1 5.0496 -1.1399 -0.5937 31 1 5.0495 0.5461 -1.1646 32 1 4.8333 -0.2454 -3.5042 33 1 4.8333 -1.9315 -2.9341 34 1 6.8928 -1.5658 -4.6338 35 1 12.0390 -1.0797 -6.3353 36 1 12.7102 -2.3548 -5.2903 37 1 11.3559 -2.7226 -6.3854 38 1 14.2685 0.4525 1.3687 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119885543.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:29 Heat of formation + Delta-G solvation = 13.085910 kcal Electronic energy + Delta-G solvation = -20991.543518 eV Core-core repulsion = 17665.837358 eV Total energy + Delta-G solvation = -3325.706161 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.44947 -40.19143 -37.11456 -36.11190 -34.82237 -34.16373 -32.20680 -30.79015 -28.79337 -27.90535 -26.79048 -24.55997 -22.61105 -22.03901 -21.15524 -19.77321 -19.16977 -18.85139 -17.99838 -17.43581 -17.28119 -17.21118 -16.32079 -16.10508 -15.55960 -15.38339 -15.13438 -14.98819 -14.48606 -14.32275 -13.88799 -13.55272 -13.46627 -13.38833 -13.18120 -13.08713 -12.76055 -12.59367 -12.37589 -12.16753 -12.12907 -11.93426 -11.59520 -11.39992 -11.27878 -11.06483 -10.95850 -10.83141 -10.57744 -10.54494 -9.60637 -8.61636 -8.52374 -6.34479 -0.26917 0.17367 0.77612 1.06215 1.24700 1.28991 1.39559 1.55014 1.69670 1.92701 1.94531 2.00407 2.14020 2.51382 2.76976 3.41565 3.58218 3.74843 3.97747 4.05358 4.37497 4.39257 4.42886 4.62567 4.67263 4.74392 4.84641 4.85922 4.89839 4.94198 5.06195 5.13354 5.22916 5.34306 5.44615 5.47480 5.60879 5.99024 6.07837 6.73684 6.76616 6.79508 6.89150 8.50972 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.016851 B = 0.002674 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.263061 B =10467.453852 C =12092.333728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.215 4.215 3 C -0.021 4.021 4 C -0.101 4.101 5 C -0.108 4.108 6 C -0.116 4.116 7 C 0.500 3.500 8 O -0.545 6.545 9 N -0.605 5.605 10 C 0.235 3.765 11 N -0.488 5.488 12 C 0.052 3.948 13 C -0.065 4.065 14 C -0.279 4.279 15 S 0.058 5.942 16 C -0.566 4.566 17 H 0.067 0.933 18 C 0.047 3.953 19 N -0.908 5.908 20 Si 0.915 3.085 21 H -0.253 1.253 22 H -0.254 1.254 23 H -0.219 1.219 24 S 0.161 5.839 25 H 0.242 0.758 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.134 0.866 33 H 0.135 0.865 34 H 0.438 0.562 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.971 -3.641 -10.499 22.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.215 4.215 3 C -0.058 4.058 4 C -0.138 4.138 5 C -0.146 4.146 6 C -0.155 4.155 7 C 0.289 3.711 8 O -0.422 6.422 9 N -0.258 5.258 10 C -0.138 4.138 11 N -0.210 5.210 12 C -0.089 4.089 13 C -0.124 4.124 14 C -0.514 4.514 15 S 0.303 5.697 16 C -0.714 4.714 17 H 0.085 0.915 18 C -0.160 4.160 19 N -0.543 5.543 20 Si 0.734 3.266 21 H -0.177 1.177 22 H -0.178 1.178 23 H -0.143 1.143 24 S 0.407 5.593 25 H 0.258 0.742 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.280 0.720 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.107 0.893 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -18.836 -3.306 -9.526 21.365 hybrid contribution -0.279 0.170 0.405 0.520 sum -19.115 -3.136 -9.121 21.410 Atomic orbital electron populations 1.25689 0.96936 1.00557 1.00044 1.23691 0.95484 1.01079 1.01289 1.18835 0.84171 1.03326 0.99464 1.21427 0.93408 1.02912 0.96048 1.21362 0.95308 1.02222 0.95714 1.21741 0.84697 1.07511 1.01586 1.22312 0.93069 0.74984 0.80744 1.90748 1.70420 1.47001 1.33986 1.42784 0.99881 1.64902 1.18211 1.24350 0.90682 1.04316 0.94442 1.66111 1.04067 1.22046 1.28771 1.19852 0.89613 1.05007 0.94422 1.20318 0.95096 1.02556 0.94463 1.28102 1.05208 1.15481 1.02612 1.81878 0.97324 1.78817 1.11699 1.22840 0.97548 1.52626 0.98421 0.91453 1.25743 1.03835 0.92233 0.94185 1.70118 1.34165 1.42360 1.07698 0.85883 0.78222 0.81765 0.80729 1.17668 1.17791 1.14270 1.86552 0.93422 1.65514 1.13853 0.74203 0.89381 0.89381 0.90338 0.90345 0.92126 0.92134 0.84762 0.84759 0.71965 0.89872 0.90888 0.89294 0.90881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.04 19.25 74.32 1.43 -1.60 16 2 C -0.22 -3.56 13.34 31.12 0.42 -3.14 16 3 C -0.02 -0.30 5.70 28.79 0.16 -0.14 16 4 C -0.10 -1.10 5.17 30.59 0.16 -0.94 16 5 C -0.11 -1.61 4.50 30.59 0.14 -1.47 16 6 C -0.12 -1.37 5.70 29.85 0.17 -1.20 16 7 C 0.50 12.18 7.79 87.66 0.68 12.87 16 8 O -0.55 -19.45 13.50 -3.07 -0.04 -19.49 16 9 N -0.61 -14.93 5.40 -309.56 -1.67 -16.60 16 10 C 0.23 8.44 8.40 179.15 1.50 9.95 16 11 N -0.49 -17.84 10.55 -184.87 -1.95 -19.79 16 12 C 0.05 2.04 6.73 41.77 0.28 2.32 16 13 C -0.07 -1.97 10.02 71.24 0.71 -1.26 16 14 C -0.28 -12.77 6.67 67.00 0.45 -12.33 16 15 S 0.06 2.81 18.70 -56.49 -1.06 1.75 16 16 C -0.57 -33.12 9.80 67.87 0.67 -32.45 16 17 H 0.07 4.34 6.21 -2.91 -0.02 4.32 16 18 C 0.05 2.68 5.49 84.74 0.47 3.15 16 19 N -0.91 -54.99 13.98 21.59 0.30 -54.69 16 20 Si 0.91 41.12 27.73 68.60 1.90 43.02 16 21 H -0.25 -10.92 7.11 99.48 0.71 -10.21 16 22 H -0.25 -10.80 7.11 99.48 0.71 -10.10 16 23 H -0.22 -9.18 6.73 99.48 0.67 -8.51 16 24 S 0.16 7.35 18.35 -56.49 -1.04 6.32 16 25 H 0.24 1.62 7.80 -4.42 -0.03 1.58 16 26 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 28 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 1.11 8.10 -2.39 -0.02 1.09 16 31 H 0.06 1.11 8.10 -2.38 -0.02 1.09 16 32 H 0.13 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.13 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.44 6.83 8.82 -92.71 -0.82 6.02 16 35 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 36 H 0.07 2.21 7.37 -2.39 -0.02 2.20 16 37 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 38 H 0.28 15.56 8.32 -92.71 -0.77 14.79 16 Total: -1.00 -77.54 357.60 3.91 -73.63 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: 0.23 Total: 12.10 kcal Atomic # 6 Polarization: -33.48 SS G_CDS: 7.24 Total: -26.25 kcal Atomic # 7 Polarization: -87.76 SS G_CDS: -3.32 Total: -91.08 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.04 Total: -19.49 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 1.90 Total: 43.02 kcal Atomic # 16 Polarization: 10.16 SS G_CDS: -2.09 Total: 8.07 kcal Total: -77.54 3.91 -73.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119885543.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.712 kcal (2) G-P(sol) polarization free energy of solvation -77.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds