Wall clock time and date at job start Tue Mar 31 2020 13:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33045 * 119.99931 * 2 1 4 4 C 1.47033 * 119.99793 * 172.34427 * 3 2 1 5 5 O 1.21640 * 119.99819 * 353.99818 * 4 3 2 6 6 N 1.34775 * 119.99734 * 174.00253 * 4 3 2 7 7 C 1.38739 * 119.99704 * 180.02562 * 6 4 3 8 8 N 1.29979 * 125.36488 * 179.97438 * 7 6 4 9 9 C 1.31575 * 117.13865 * 179.97438 * 8 7 6 10 10 C 1.50699 * 122.23136 * 179.97438 * 9 8 7 11 11 C 1.34683 * 115.53675 * 0.02562 * 9 8 7 12 12 S 1.76194 * 125.92714 * 179.97438 * 11 9 8 13 13 C 1.76197 * 99.99937 * 180.02562 * 12 11 9 14 14 H 1.08002 * 120.00285 * 0.02562 * 13 12 11 15 15 C 1.38431 * 120.00291 * 180.02562 * 13 12 11 16 16 N 1.31812 * 120.00425 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 119.99931 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.46908 * 89.99585 * 17 15 13 19 19 H 1.48501 * 109.47288 * 209.99789 * 17 15 13 20 20 H 1.48500 * 109.46815 * 329.99920 * 17 15 13 21 21 S 1.76138 * 125.36789 * 359.68523 * 7 6 4 22 22 C 1.50700 * 119.99651 * 179.97438 * 2 1 3 23 23 C 1.52998 * 117.50375 * 356.61760 * 22 2 1 24 24 C 1.52997 * 117.50395 * 287.99203 * 22 2 1 25 25 H 1.09006 * 109.47349 * 270.00139 * 1 2 3 26 26 H 1.08994 * 109.47166 * 30.00569 * 1 2 3 27 27 H 1.09000 * 109.47284 * 150.00396 * 1 2 3 28 28 H 1.07990 * 119.99984 * 352.33841 * 3 2 1 29 29 H 0.96998 * 119.99915 * 359.97438 * 6 4 3 30 30 H 1.08998 * 109.46813 * 90.02863 * 10 9 8 31 31 H 1.08999 * 109.46939 * 210.02638 * 10 9 8 32 32 H 1.08994 * 109.47337 * 330.02523 * 10 9 8 33 33 H 0.96993 * 120.00083 * 179.97438 * 16 15 13 34 34 H 1.09008 * 115.54513 * 142.32749 * 22 2 1 35 35 H 1.08998 * 117.49742 * 359.97438 * 23 22 2 36 36 H 1.09000 * 117.49898 * 145.02189 * 23 22 2 37 37 H 1.08999 * 117.50499 * 214.98289 * 24 22 2 38 38 H 1.08998 * 117.49891 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1722 1.1522 0.0000 4 6 3.6327 1.1579 0.1696 5 8 4.2200 0.1222 0.4188 6 7 4.3206 2.3106 0.0492 7 6 5.6988 2.3158 0.2087 8 7 6.4630 3.3630 0.1150 9 6 7.7535 3.1825 0.2973 10 6 8.7432 4.3159 0.2143 11 6 8.1311 1.9171 0.5619 12 16 9.7808 1.3691 0.8496 13 6 9.4908 -0.3485 1.1145 14 1 8.4857 -0.7405 1.0651 15 6 10.5514 -1.1957 1.3861 16 7 10.3345 -2.4806 1.5848 17 14 12.2899 -0.5178 1.4723 18 1 12.5898 -0.1001 2.8655 19 1 13.2522 -1.5681 1.0524 20 1 12.4098 0.6537 0.5676 21 16 6.6878 0.9056 0.5773 22 6 2.2604 -1.3051 0.0006 23 6 1.4404 -2.5943 0.0812 24 6 2.2506 -2.1260 1.2916 25 1 -0.3634 0.0000 1.0277 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3634 -0.8900 -0.5138 28 1 1.6395 2.0832 -0.1247 29 1 3.8522 3.1363 -0.1498 30 1 8.8648 4.7649 1.2000 31 1 9.7038 3.9348 -0.1323 32 1 8.3769 5.0676 -0.4848 33 1 11.0776 -3.0742 1.7747 34 1 3.1696 -1.3233 -0.6005 35 1 0.3559 -2.4984 0.1343 36 1 1.8099 -3.4609 -0.4669 37 1 3.1531 -2.6846 1.5398 38 1 1.6996 -1.7219 2.1408 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120261819.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:24 Heat of formation + Delta-G solvation = 43.744279 kcal Electronic energy + Delta-G solvation = -21849.057987 eV Core-core repulsion = 18524.681274 eV Total energy + Delta-G solvation = -3324.376714 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.25444 -38.73758 -37.74975 -34.66484 -33.62606 -32.73363 -30.64853 -28.46989 -27.10571 -25.87490 -24.57077 -22.84368 -22.34163 -21.16752 -20.16250 -18.70068 -17.73701 -17.63714 -16.74366 -16.01332 -15.55554 -15.36941 -15.18738 -14.88645 -14.14515 -13.98226 -13.77062 -13.48190 -13.20625 -13.13848 -12.74192 -12.58406 -12.16773 -11.98138 -11.72869 -11.54401 -11.36464 -11.31975 -11.25734 -10.96353 -10.69928 -10.55195 -10.37389 -10.11450 -9.64117 -9.43171 -9.15433 -9.07960 -8.80383 -8.73033 -7.82971 -6.68486 -6.53720 -4.26381 0.97847 1.54537 1.85043 2.51588 2.81634 3.01351 3.03328 3.11904 3.21610 3.40803 3.63562 3.88084 4.04903 4.36562 4.51552 4.54140 4.86204 4.87111 4.94111 4.97849 5.07039 5.18788 5.22492 5.34052 5.49124 5.62609 5.84979 5.88947 6.04201 6.08137 6.12906 6.14447 6.16926 6.33127 6.40362 6.46959 6.93209 7.25659 7.69312 8.09060 8.25975 8.47629 8.86337 10.54228 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.014937 B = 0.003775 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.130691 B = 7416.046718 C = 9213.342113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.009 3.991 3 C -0.224 4.224 4 C 0.537 3.463 5 O -0.498 6.498 6 N -0.615 5.615 7 C 0.198 3.802 8 N -0.485 5.485 9 C 0.032 3.968 10 C -0.063 4.063 11 C -0.242 4.242 12 S 0.050 5.950 13 C -0.543 4.543 14 H 0.105 0.895 15 C 0.102 3.898 16 N -0.858 5.858 17 Si 0.852 3.148 18 H -0.261 1.261 19 H -0.266 1.266 20 H -0.236 1.236 21 S 0.233 5.767 22 C -0.122 4.122 23 C -0.189 4.189 24 C -0.149 4.149 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.133 0.867 29 H 0.414 0.586 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.276 0.724 34 H 0.131 0.869 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.269 6.317 -3.209 18.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.007 3.993 3 C -0.245 4.245 4 C 0.326 3.674 5 O -0.374 6.374 6 N -0.263 5.263 7 C -0.173 4.173 8 N -0.207 5.207 9 C -0.109 4.109 10 C -0.123 4.123 11 C -0.478 4.478 12 S 0.297 5.703 13 C -0.692 4.692 14 H 0.122 0.878 15 C -0.109 4.109 16 N -0.492 5.492 17 Si 0.675 3.325 18 H -0.186 1.186 19 H -0.190 1.190 20 H -0.160 1.160 21 S 0.479 5.521 22 C -0.140 4.140 23 C -0.225 4.225 24 C -0.186 4.186 25 H 0.099 0.901 26 H 0.092 0.908 27 H 0.095 0.905 28 H 0.151 0.849 29 H 0.251 0.749 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.149 0.851 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.119 0.881 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -16.095 5.291 -2.884 17.186 hybrid contribution -0.105 0.611 -0.078 0.625 sum -16.200 5.902 -2.961 17.494 Atomic orbital electron populations 1.21044 0.90798 1.03599 1.03091 1.21877 0.95360 0.93331 0.88770 1.22056 0.91797 0.99046 1.11605 1.18734 0.88395 0.82479 0.77751 1.90799 1.69667 1.30592 1.46342 1.42359 1.02941 1.12107 1.68881 1.23988 0.88776 0.95445 1.09067 1.65890 1.04124 1.30125 1.20597 1.19111 0.89084 0.93354 1.09391 1.20144 0.95810 0.94541 1.01779 1.28166 1.06053 1.00645 1.12979 1.82445 0.97588 1.08916 1.81358 1.22657 0.99507 0.90299 1.56729 0.87781 1.24733 0.99214 0.94245 0.92746 1.70008 1.33059 1.02924 1.43221 0.86817 0.83885 0.80986 0.80770 1.18580 1.19027 1.15998 1.86145 0.92216 1.05872 1.67889 1.21393 1.00742 0.88192 1.03671 1.23153 0.98248 0.98055 1.03090 1.22824 1.02338 1.02228 0.91226 0.90057 0.90811 0.90501 0.84946 0.74868 0.91737 0.91114 0.91753 0.91364 0.85133 0.88719 0.88547 0.88065 0.89120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.81 9.45 36.01 0.34 -0.47 16 2 C 0.01 0.08 5.80 -101.15 -0.59 -0.50 16 3 C -0.22 -2.31 9.63 -37.82 -0.36 -2.68 16 4 C 0.54 7.86 7.63 -12.70 -0.10 7.76 16 5 O -0.50 -8.98 10.96 5.24 0.06 -8.92 16 6 N -0.61 -9.12 5.39 -12.89 -0.07 -9.19 16 7 C 0.20 3.81 8.39 -87.32 -0.73 3.08 16 8 N -0.49 -9.68 10.55 -9.81 -0.10 -9.79 16 9 C 0.03 0.67 6.73 -83.96 -0.57 0.11 16 10 C -0.06 -1.07 10.02 36.01 0.36 -0.71 16 11 C -0.24 -5.56 6.67 29.47 0.20 -5.36 16 12 S 0.05 1.21 18.70 -107.50 -2.01 -0.80 16 13 C -0.54 -15.24 9.80 30.80 0.30 -14.94 16 14 H 0.10 3.13 6.21 -52.49 -0.33 2.80 16 15 C 0.10 2.83 5.49 -17.49 -0.10 2.74 16 16 N -0.86 -24.88 13.98 55.47 0.78 -24.11 16 17 Si 0.85 19.82 27.73 -169.99 -4.71 15.11 16 18 H -0.26 -5.97 7.11 56.52 0.40 -5.57 16 19 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 20 H -0.24 -5.26 6.73 56.52 0.38 -4.88 16 21 S 0.23 5.21 18.34 -107.50 -1.97 3.24 16 22 C -0.12 -1.45 4.12 -91.77 -0.38 -1.83 16 23 C -0.19 -1.80 9.78 -26.73 -0.26 -2.06 16 24 C -0.15 -1.73 10.22 -26.73 -0.27 -2.00 16 25 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.36 8.06 -51.93 -0.42 -0.06 16 27 H 0.08 0.43 6.46 -51.93 -0.34 0.10 16 28 H 0.13 0.92 8.04 -52.49 -0.42 0.50 16 29 H 0.41 4.66 8.80 -40.82 -0.36 4.30 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.07 1.18 7.37 -51.93 -0.38 0.80 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.28 7.35 8.32 -40.82 -0.34 7.01 16 34 H 0.13 1.91 6.62 -51.92 -0.34 1.56 16 35 H 0.09 0.71 6.36 -51.93 -0.33 0.38 16 36 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 345.42 15.07 5.21 5.21 Total: -1.00 -32.10 345.42 -9.60 -41.69 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -4.61 Total: 4.42 kcal Atomic # 6 Polarization: -14.71 SS G_CDS: -2.15 Total: -16.87 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: 0.60 Total: -43.08 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.06 Total: -8.92 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -4.71 Total: 15.11 kcal Atomic # 16 Polarization: 6.42 SS G_CDS: -3.98 Total: 2.44 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.10 -9.60 -41.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120261819.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.436 kcal (2) G-P(sol) polarization free energy of solvation -32.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds