Wall clock time and date at job start Tue Mar 31 2020 13:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33045 * 119.99931 * 2 1 4 4 C 1.47033 * 119.99793 * 172.34427 * 3 2 1 5 5 O 1.21640 * 119.99819 * 353.99818 * 4 3 2 6 6 N 1.34775 * 119.99734 * 174.00253 * 4 3 2 7 7 C 1.38739 * 119.99704 * 180.02562 * 6 4 3 8 8 N 1.29979 * 125.36488 * 179.97438 * 7 6 4 9 9 C 1.31575 * 117.13865 * 179.97438 * 8 7 6 10 10 C 1.50699 * 122.23136 * 179.97438 * 9 8 7 11 11 C 1.34683 * 115.53675 * 0.02562 * 9 8 7 12 12 S 1.76194 * 125.92714 * 179.97438 * 11 9 8 13 13 C 1.76197 * 99.99937 * 180.02562 * 12 11 9 14 14 H 1.08002 * 120.00285 * 0.02562 * 13 12 11 15 15 C 1.38431 * 120.00291 * 180.02562 * 13 12 11 16 16 N 1.31812 * 120.00425 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 119.99931 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.46908 * 89.99585 * 17 15 13 19 19 H 1.48501 * 109.47288 * 209.99789 * 17 15 13 20 20 H 1.48500 * 109.46815 * 329.99920 * 17 15 13 21 21 S 1.76138 * 125.36789 * 359.68523 * 7 6 4 22 22 C 1.50700 * 119.99651 * 179.97438 * 2 1 3 23 23 C 1.52998 * 117.50375 * 356.61760 * 22 2 1 24 24 C 1.52997 * 117.50395 * 287.99203 * 22 2 1 25 25 H 1.09006 * 109.47349 * 270.00139 * 1 2 3 26 26 H 1.08994 * 109.47166 * 30.00569 * 1 2 3 27 27 H 1.09000 * 109.47284 * 150.00396 * 1 2 3 28 28 H 1.07990 * 119.99984 * 352.33841 * 3 2 1 29 29 H 0.96998 * 119.99915 * 359.97438 * 6 4 3 30 30 H 1.08998 * 109.46813 * 90.02863 * 10 9 8 31 31 H 1.08999 * 109.46939 * 210.02638 * 10 9 8 32 32 H 1.08994 * 109.47337 * 330.02523 * 10 9 8 33 33 H 0.96993 * 120.00083 * 179.97438 * 16 15 13 34 34 H 1.09008 * 115.54513 * 142.32749 * 22 2 1 35 35 H 1.08998 * 117.49742 * 359.97438 * 23 22 2 36 36 H 1.09000 * 117.49898 * 145.02189 * 23 22 2 37 37 H 1.08999 * 117.50499 * 214.98289 * 24 22 2 38 38 H 1.08998 * 117.49891 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1722 1.1522 0.0000 4 6 3.6327 1.1579 0.1696 5 8 4.2200 0.1222 0.4188 6 7 4.3206 2.3106 0.0492 7 6 5.6988 2.3158 0.2087 8 7 6.4630 3.3630 0.1150 9 6 7.7535 3.1825 0.2973 10 6 8.7432 4.3159 0.2143 11 6 8.1311 1.9171 0.5619 12 16 9.7808 1.3691 0.8496 13 6 9.4908 -0.3485 1.1145 14 1 8.4857 -0.7405 1.0651 15 6 10.5514 -1.1957 1.3861 16 7 10.3345 -2.4806 1.5848 17 14 12.2899 -0.5178 1.4723 18 1 12.5898 -0.1001 2.8655 19 1 13.2522 -1.5681 1.0524 20 1 12.4098 0.6537 0.5676 21 16 6.6878 0.9056 0.5773 22 6 2.2604 -1.3051 0.0006 23 6 1.4404 -2.5943 0.0812 24 6 2.2506 -2.1260 1.2916 25 1 -0.3634 0.0000 1.0277 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3634 -0.8900 -0.5138 28 1 1.6395 2.0832 -0.1247 29 1 3.8522 3.1363 -0.1498 30 1 8.8648 4.7649 1.2000 31 1 9.7038 3.9348 -0.1323 32 1 8.3769 5.0676 -0.4848 33 1 11.0776 -3.0742 1.7747 34 1 3.1696 -1.3233 -0.6005 35 1 0.3559 -2.4984 0.1343 36 1 1.8099 -3.4609 -0.4669 37 1 3.1531 -2.6846 1.5398 38 1 1.6996 -1.7219 2.1408 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120261819.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:23 Heat of formation + Delta-G solvation = 23.694250 kcal Electronic energy + Delta-G solvation = -21849.927422 eV Core-core repulsion = 18524.681274 eV Total energy + Delta-G solvation = -3325.246148 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.51562 -40.27107 -38.74692 -36.06201 -34.82922 -34.45339 -32.12433 -29.25993 -28.73832 -27.90794 -25.75699 -23.98772 -23.24829 -22.48965 -21.62557 -20.20766 -19.23050 -18.96310 -18.08874 -17.48418 -17.23794 -16.83799 -16.58266 -16.08557 -15.63965 -15.39474 -15.01344 -14.56077 -14.47391 -14.25327 -13.88054 -13.55937 -13.49245 -13.41577 -13.20479 -13.18742 -13.09430 -12.63743 -12.23300 -12.17134 -12.09870 -11.94353 -11.75765 -11.41094 -11.28236 -11.12445 -10.69662 -10.56633 -10.51539 -9.99028 -9.56838 -8.62318 -8.51289 -6.35048 -0.34004 0.17092 0.29021 0.77905 1.05847 1.27973 1.38738 1.56151 1.69225 1.73724 2.13445 2.21891 2.50913 2.76354 2.99259 3.50518 3.61747 3.79590 4.00532 4.08989 4.17353 4.36092 4.37105 4.65811 4.69063 4.71903 4.83657 4.86331 4.92763 4.94978 5.05812 5.07477 5.19938 5.23503 5.37391 5.44520 5.53576 5.60139 6.06644 6.07574 6.75997 6.81551 6.90471 8.50377 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.014937 B = 0.003775 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.130691 B = 7416.046718 C = 9213.342113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.022 3.978 3 C -0.231 4.231 4 C 0.529 3.471 5 O -0.535 6.535 6 N -0.603 5.603 7 C 0.237 3.763 8 N -0.490 5.490 9 C 0.053 3.947 10 C -0.065 4.065 11 C -0.281 4.281 12 S 0.057 5.943 13 C -0.567 4.567 14 H 0.067 0.933 15 C 0.049 3.951 16 N -0.908 5.908 17 Si 0.914 3.086 18 H -0.252 1.252 19 H -0.253 1.253 20 H -0.220 1.220 21 S 0.166 5.834 22 C -0.144 4.144 23 C -0.160 4.160 24 C -0.166 4.166 25 H 0.096 0.904 26 H 0.097 0.903 27 H 0.086 0.914 28 H 0.177 0.823 29 H 0.436 0.564 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.282 0.718 34 H 0.092 0.908 35 H 0.128 0.872 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.658 9.169 -3.860 22.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.020 3.980 3 C -0.252 4.252 4 C 0.321 3.679 5 O -0.413 6.413 6 N -0.254 5.254 7 C -0.135 4.135 8 N -0.213 5.213 9 C -0.088 4.088 10 C -0.124 4.124 11 C -0.516 4.516 12 S 0.302 5.698 13 C -0.715 4.715 14 H 0.085 0.915 15 C -0.158 4.158 16 N -0.544 5.544 17 Si 0.733 3.267 18 H -0.176 1.176 19 H -0.177 1.177 20 H -0.143 1.143 21 S 0.412 5.588 22 C -0.162 4.162 23 C -0.196 4.196 24 C -0.203 4.203 25 H 0.114 0.886 26 H 0.116 0.884 27 H 0.105 0.895 28 H 0.194 0.806 29 H 0.277 0.723 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.091 0.909 34 H 0.110 0.890 35 H 0.146 0.854 36 H 0.113 0.887 37 H 0.091 0.909 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -18.550 8.177 -3.553 20.581 hybrid contribution 0.258 -0.247 0.063 0.362 sum -18.292 7.930 -3.490 20.240 Atomic orbital electron populations 1.21152 0.87231 1.05332 1.04443 1.22228 0.97502 0.91722 0.86556 1.22207 0.88604 1.01271 1.13071 1.19757 0.90263 0.81508 0.76348 1.90823 1.70708 1.32028 1.47730 1.42546 1.00871 1.13602 1.68368 1.24273 0.90583 0.93649 1.05038 1.66117 1.03832 1.29262 1.22097 1.19856 0.89995 0.93540 1.05404 1.20316 0.94826 0.93684 1.03579 1.28113 1.05351 1.01418 1.16726 1.81854 0.98719 1.05505 1.83726 1.22840 0.98328 0.93212 1.57115 0.91548 1.25721 1.03712 0.94364 0.91997 1.70117 1.34730 1.04540 1.45010 0.85893 0.78199 0.81090 0.81490 1.17641 1.17732 1.14282 1.86520 0.94274 1.08624 1.69429 1.21343 1.00706 0.90873 1.03279 1.23252 0.99585 0.96444 1.00352 1.22801 1.02263 1.03009 0.92272 0.88559 0.88441 0.89480 0.80556 0.72277 0.89856 0.90845 0.89326 0.90886 0.88975 0.85423 0.88712 0.90941 0.87810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.99 9.45 71.24 0.67 -0.32 16 2 C 0.02 0.38 5.80 -17.61 -0.10 0.27 16 3 C -0.23 -4.14 9.63 23.42 0.23 -3.92 16 4 C 0.53 15.18 7.63 86.55 0.66 15.84 16 5 O -0.53 -20.25 10.96 -4.16 -0.05 -20.29 16 6 N -0.60 -17.01 5.39 -312.95 -1.69 -18.69 16 7 C 0.24 9.05 8.39 179.19 1.50 10.55 16 8 N -0.49 -18.83 10.55 -184.96 -1.95 -20.78 16 9 C 0.05 2.15 6.73 41.78 0.28 2.43 16 10 C -0.06 -2.03 10.02 71.24 0.71 -1.32 16 11 C -0.28 -13.19 6.67 67.00 0.45 -12.75 16 12 S 0.06 2.83 18.70 -56.49 -1.06 1.77 16 13 C -0.57 -33.59 9.80 67.87 0.67 -32.92 16 14 H 0.07 4.33 6.21 -2.91 -0.02 4.32 16 15 C 0.05 2.82 5.49 84.74 0.47 3.29 16 16 N -0.91 -55.43 13.98 21.59 0.30 -55.13 16 17 Si 0.91 41.52 27.73 68.60 1.90 43.42 16 18 H -0.25 -11.02 7.11 99.48 0.71 -10.31 16 19 H -0.25 -10.87 7.11 99.48 0.71 -10.17 16 20 H -0.22 -9.30 6.73 99.48 0.67 -8.63 16 21 S 0.17 7.81 18.34 -56.49 -1.04 6.77 16 22 C -0.14 -3.42 4.12 -11.54 -0.05 -3.46 16 23 C -0.16 -2.85 9.78 30.59 0.30 -2.55 16 24 C -0.17 -3.97 10.22 30.59 0.31 -3.65 16 25 H 0.10 0.58 8.14 -2.38 -0.02 0.56 16 26 H 0.10 0.39 8.06 -2.39 -0.02 0.37 16 27 H 0.09 0.56 6.46 -2.39 -0.02 0.54 16 28 H 0.18 1.57 8.04 -2.92 -0.02 1.55 16 29 H 0.44 8.52 8.80 -92.71 -0.82 7.70 16 30 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.07 2.29 7.37 -2.39 -0.02 2.28 16 32 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.28 15.67 8.32 -92.71 -0.77 14.90 16 34 H 0.09 2.92 6.62 -2.38 -0.02 2.90 16 35 H 0.13 1.45 6.36 -2.39 -0.02 1.43 16 36 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.10 2.14 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -76.17 345.42 2.78 -73.39 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: 0.26 Total: 18.05 kcal Atomic # 6 Polarization: -34.60 SS G_CDS: 6.10 Total: -28.50 kcal Atomic # 7 Polarization: -91.27 SS G_CDS: -3.34 Total: -94.60 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.05 Total: -20.29 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 1.90 Total: 43.42 kcal Atomic # 16 Polarization: 10.63 SS G_CDS: -2.09 Total: 8.54 kcal Total: -76.17 2.78 -73.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120261819.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.082 kcal (2) G-P(sol) polarization free energy of solvation -76.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds