Wall clock time and date at job start Tue Mar 31 2020 13:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.36552 * 120.03618 * 269.72420 * 3 2 1 5 5 S 1.76196 * 119.03916 * 359.97438 * 4 3 2 6 6 C 1.81008 * 99.99967 * 179.97438 * 5 4 3 7 7 C 1.52994 * 109.47028 * 179.97438 * 6 5 4 8 8 C 1.52995 * 109.47150 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.47422 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99658 * 359.97438 * 9 8 7 11 11 C 1.37875 * 119.99915 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00097 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99813 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46978 * 90.00006 * 13 11 9 15 15 H 1.48499 * 109.47122 * 209.99966 * 13 11 9 16 16 H 1.48499 * 109.46891 * 329.99913 * 13 11 9 17 17 N 1.30719 * 121.91886 * 179.69061 * 4 3 2 18 18 C 1.36311 * 121.64987 * 0.59594 * 17 4 3 19 19 C 1.40013 * 128.99433 * 179.70194 * 18 17 4 20 20 C 1.32718 * 115.82066 * 179.97438 * 19 18 17 21 21 S 1.75578 * 110.56150 * 0.02562 * 20 19 18 22 22 C 1.39150 * 118.36787 * 359.70323 * 18 17 4 23 23 C 1.34865 * 120.03254 * 90.00012 * 3 2 1 24 24 O 1.21980 * 120.57403 * 0.02562 * 23 3 2 25 25 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 26 26 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 28 28 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 29 29 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 30 30 H 1.08997 * 109.46693 * 299.99580 * 6 5 4 31 31 H 1.08993 * 109.46934 * 59.99465 * 6 5 4 32 32 H 1.08997 * 109.47222 * 299.99902 * 7 6 5 33 33 H 1.09003 * 109.47169 * 59.99870 * 7 6 5 34 34 H 1.09005 * 109.47256 * 299.99816 * 8 7 6 35 35 H 1.09003 * 109.47185 * 59.99887 * 8 7 6 36 36 H 0.96997 * 119.99817 * 180.02562 * 12 11 9 37 37 H 1.07997 * 122.08675 * 0.02562 * 19 18 17 38 38 H 1.07998 * 124.71793 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2516 2.0238 -1.1821 5 16 1.9572 1.1674 -2.6936 6 6 2.4175 2.4553 -3.8793 7 6 2.2384 1.9251 -5.3032 8 6 2.6269 3.0138 -6.3055 9 6 2.4511 2.4914 -7.7081 10 1 2.0981 1.4834 -7.8685 11 6 2.7420 3.2999 -8.7863 12 7 3.1724 4.5272 -8.5909 13 14 2.5248 2.6521 -10.5249 14 1 1.1465 2.9449 -10.9937 15 1 3.5044 3.3119 -11.4251 16 1 2.7509 1.1844 -10.5381 17 7 2.6816 3.2574 -1.2251 18 6 2.9326 3.9674 -0.0889 19 6 3.3973 5.2815 0.0443 20 6 3.5507 5.7170 1.2886 21 16 3.1086 4.4662 2.4387 22 6 2.7142 3.3495 1.1386 23 6 2.2434 2.0176 1.1676 24 8 2.0442 1.4530 2.2304 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3635 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.7807 3.3278 -3.7333 31 1 3.4593 2.7359 -3.7247 32 1 2.8754 1.0527 -5.4489 33 1 1.1967 1.6442 -5.4580 34 1 1.9895 3.8860 -6.1597 35 1 3.6686 3.2952 -6.1508 36 1 3.3767 5.0961 -9.3495 37 1 3.6163 5.9021 -0.8119 38 1 3.8998 6.7033 1.5564 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122340411.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:15 Heat of formation + Delta-G solvation = -7.807737 kcal Electronic energy + Delta-G solvation = -21869.425631 eV Core-core repulsion = 18542.813454 eV Total energy + Delta-G solvation = -3326.612177 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.79662 -39.33612 -37.98033 -36.38390 -35.36806 -34.01535 -32.05571 -30.92797 -29.40818 -27.01789 -25.62256 -25.33295 -24.03532 -22.55977 -21.85535 -20.29757 -18.96441 -18.82515 -18.39594 -17.71099 -17.25510 -16.76826 -16.51455 -16.20757 -15.56781 -15.35563 -15.19167 -14.89565 -14.68701 -14.54393 -14.43450 -13.97250 -13.70791 -13.64438 -13.23125 -13.06747 -12.88624 -12.72158 -12.40584 -12.39216 -12.17970 -11.93991 -11.62671 -11.51576 -11.28200 -11.15062 -11.11093 -11.01060 -10.52097 -10.23942 -9.65652 -8.66043 -8.16948 -6.27518 -1.00315 -0.26837 0.07885 0.30597 0.81386 0.86341 1.16086 1.43991 1.44707 1.44946 1.55769 2.26443 2.44256 2.95322 3.17247 3.23939 3.71203 3.88921 3.97537 4.06201 4.06694 4.11017 4.28872 4.46235 4.59206 4.65886 4.75470 4.84154 4.84563 4.88806 5.04797 5.10316 5.13831 5.18889 5.25135 5.54250 5.72980 5.87349 6.25347 6.35510 6.42233 6.89421 7.41813 8.94708 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.017554 B = 0.002857 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.685669 B = 9799.810601 C =11278.005283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.080 3.920 3 N -0.514 5.514 4 C 0.361 3.639 5 S 0.043 5.957 6 C -0.093 4.093 7 C -0.085 4.085 8 C 0.031 3.969 9 C -0.541 4.541 10 H 0.064 0.936 11 C 0.000 4.000 12 N -0.933 5.933 13 Si 0.962 3.038 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.262 1.262 17 N -0.534 5.534 18 C 0.175 3.825 19 C -0.150 4.150 20 C -0.137 4.137 21 S 0.217 5.783 22 C -0.380 4.380 23 C 0.568 3.432 24 O -0.559 6.559 25 H 0.066 0.934 26 H 0.109 0.891 27 H 0.046 0.954 28 H 0.118 0.882 29 H 0.105 0.895 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.068 0.932 34 H -0.004 1.004 35 H -0.004 1.004 36 H 0.263 0.737 37 H 0.168 0.832 38 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.815 -3.538 21.016 21.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.040 4.040 3 N -0.237 5.237 4 C -0.015 4.015 5 S 0.279 5.721 6 C -0.242 4.242 7 C -0.125 4.125 8 C -0.008 4.008 9 C -0.579 4.579 10 H 0.083 0.917 11 C -0.197 4.197 12 N -0.573 5.573 13 Si 0.787 3.213 14 H -0.199 1.199 15 H -0.211 1.211 16 H -0.186 1.186 17 N -0.261 5.261 18 C 0.045 3.955 19 C -0.181 4.181 20 C -0.275 4.275 21 S 0.481 5.519 22 C -0.504 4.504 23 C 0.364 3.636 24 O -0.440 6.440 25 H 0.085 0.915 26 H 0.127 0.873 27 H 0.065 0.935 28 H 0.136 0.864 29 H 0.123 0.877 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.015 0.985 35 H 0.015 0.985 36 H 0.072 0.928 37 H 0.185 0.815 38 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -2.142 -4.472 22.353 22.897 hybrid contribution 0.412 1.128 -1.560 1.969 sum -1.730 -3.344 20.793 21.131 Atomic orbital electron populations 1.22107 0.92463 1.05175 1.02305 1.22330 0.97412 0.78095 1.06209 1.46490 1.55813 1.16575 1.04823 1.25377 0.92198 0.91562 0.92360 1.85566 1.79718 1.18150 0.88626 1.23732 1.05931 0.98982 0.95559 1.21274 1.01999 0.99316 0.89875 1.18956 0.95206 0.93660 0.92962 1.21686 1.44126 0.99779 0.92329 0.91746 1.25939 0.94862 0.95091 1.03848 1.70093 1.46319 1.08582 1.32288 0.85493 0.77969 0.78905 0.78968 1.19908 1.21086 1.18576 1.68903 1.23568 1.04790 1.28834 1.19371 0.94383 0.94860 0.86880 1.19774 1.05155 0.93140 1.00003 1.26289 1.01592 1.04864 0.94721 1.83932 1.62267 1.00831 1.04866 1.24647 1.23059 1.01506 1.01172 1.15959 0.78444 0.85871 0.83343 1.90891 1.55341 1.69059 1.28672 0.91516 0.87255 0.93528 0.86390 0.87696 0.89073 0.89114 0.91380 0.91350 0.98527 0.98529 0.92842 0.81509 0.75910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 10.24 71.98 0.74 -2.01 16 2 C 0.08 1.57 5.64 86.38 0.49 2.06 16 3 N -0.51 -13.64 2.61 -650.14 -1.70 -15.34 16 4 C 0.36 9.97 7.78 179.71 1.40 11.37 16 5 S 0.04 1.06 20.00 -56.49 -1.13 -0.07 16 6 C -0.09 -2.91 4.80 71.98 0.35 -2.56 16 7 C -0.09 -3.11 5.16 30.59 0.16 -2.96 16 8 C 0.03 1.55 4.97 29.85 0.15 1.69 16 9 C -0.54 -29.31 9.11 25.60 0.23 -29.08 16 10 H 0.06 3.31 7.74 -2.91 -0.02 3.28 16 11 C 0.00 0.03 5.46 84.65 0.46 0.49 16 12 N -0.93 -55.32 13.29 21.45 0.28 -55.04 16 13 Si 0.96 42.87 29.54 68.60 2.03 44.89 16 14 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 15 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 16 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 17 N -0.53 -16.18 9.14 -189.18 -1.73 -17.91 16 18 C 0.18 4.93 6.98 39.10 0.27 5.21 16 19 C -0.15 -3.20 10.16 21.53 0.22 -2.98 16 20 C -0.14 -2.08 11.12 66.65 0.74 -1.34 16 21 S 0.22 4.40 23.29 -56.49 -1.32 3.08 16 22 C -0.38 -10.79 6.47 23.24 0.15 -10.64 16 23 C 0.57 17.42 7.45 84.98 0.63 18.05 16 24 O -0.56 -19.04 16.76 -5.25 -0.09 -19.12 16 25 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.11 1.22 8.14 -2.39 -0.02 1.21 16 27 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.12 1.86 6.54 -2.39 -0.02 1.85 16 29 H 0.10 2.05 7.45 -2.39 -0.02 2.03 16 30 H 0.09 2.96 8.11 -2.40 -0.02 2.95 16 31 H 0.09 2.95 8.11 -2.40 -0.02 2.93 16 32 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 35 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 36 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 37 H 0.17 3.15 8.06 -2.91 -0.02 3.12 16 38 H 0.22 1.33 8.06 -2.91 -0.02 1.30 16 Total: -1.00 -69.99 350.64 3.41 -66.58 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: 1.07 Total: 5.64 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: 5.99 Total: -12.71 kcal Atomic # 7 Polarization: -85.15 SS G_CDS: -3.14 Total: -88.29 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.09 Total: -19.12 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 16 Polarization: 5.45 SS G_CDS: -2.45 Total: 3.01 kcal Total: -69.99 3.41 -66.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122340411.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.775 kcal (2) G-P(sol) polarization free energy of solvation -69.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds