Wall clock time and date at job start Tue Mar 31 2020 13:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31567 * 122.22900 * 2 1 4 4 C 1.29980 * 117.13520 * 179.97438 * 3 2 1 5 5 N 1.38746 * 125.36588 * 179.97438 * 4 3 2 6 6 C 1.34775 * 119.99831 * 180.02562 * 5 4 3 7 7 O 1.21626 * 120.00279 * 0.02562 * 6 5 4 8 8 C 1.47034 * 119.99650 * 180.02562 * 6 5 4 9 9 C 1.31421 * 117.96329 * 180.11551 * 8 6 5 10 10 C 1.50101 * 123.72584 * 180.55123 * 9 8 6 11 11 C 1.53008 * 110.13236 * 342.70451 * 10 9 8 12 12 C 1.53358 * 108.51318 * 49.75616 * 11 10 9 13 13 C 1.50094 * 118.10909 * 0.02562 * 8 6 5 14 14 S 1.76137 * 109.26893 * 0.23982 * 4 3 2 15 15 C 1.34677 * 122.22701 * 179.97438 * 2 1 3 16 16 S 1.76199 * 125.93565 * 0.02562 * 15 2 1 17 17 C 1.76191 * 100.00162 * 179.97438 * 16 15 2 18 18 H 1.08004 * 120.00396 * 0.02562 * 17 16 15 19 19 C 1.38432 * 120.00135 * 179.97438 * 17 16 15 20 20 N 1.31813 * 120.00130 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 119.99790 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.46895 * 89.99931 * 21 19 17 23 23 H 1.48496 * 109.46900 * 209.99894 * 21 19 17 24 24 H 1.48501 * 109.47120 * 330.00195 * 21 19 17 25 25 H 1.09000 * 109.47571 * 90.03176 * 1 2 3 26 26 H 1.09010 * 109.47085 * 210.02891 * 1 2 3 27 27 H 1.08992 * 109.47082 * 330.02172 * 1 2 3 28 28 H 0.97001 * 120.00261 * 0.02562 * 5 4 3 29 29 H 1.07995 * 118.16839 * 0.39893 * 9 8 6 30 30 H 1.08995 * 109.36168 * 222.49686 * 10 9 8 31 31 H 1.08999 * 109.24750 * 102.83485 * 10 9 8 32 32 H 1.09004 * 109.62916 * 290.04882 * 11 10 9 33 33 H 1.09003 * 109.79122 * 169.56056 * 11 10 9 34 34 H 1.09004 * 109.62957 * 172.24363 * 12 11 10 35 35 H 1.09005 * 109.63014 * 51.65599 * 12 11 10 36 36 H 1.09002 * 109.36278 * 42.60288 * 13 8 6 37 37 H 1.08998 * 109.35549 * 282.87584 * 13 8 6 38 38 H 0.96998 * 119.99884 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2087 1.1130 0.0000 4 6 3.5033 0.9976 0.0005 5 7 4.4037 2.0532 0.0001 6 6 5.7290 1.8085 0.0002 7 8 6.1358 0.6623 0.0002 8 6 6.6831 2.9273 0.0003 9 6 7.9662 2.6429 -0.0019 10 6 9.0499 3.6814 0.0099 11 6 8.4814 5.0406 -0.4030 12 6 7.2211 5.3137 0.4270 13 6 6.1346 4.3244 0.0009 14 16 3.9347 -0.7102 -0.0059 15 6 2.2252 -1.1393 0.0005 16 16 1.5698 -2.7748 0.0006 17 6 3.0666 -3.7043 0.0006 18 1 4.0188 -3.1947 0.0009 19 6 3.0222 -5.0879 0.0012 20 7 4.1420 -5.7833 0.0017 21 14 1.3753 -5.9695 0.0027 22 1 0.9379 -6.2037 -1.3969 23 1 1.5117 -7.2718 0.7032 24 1 0.3672 -5.1338 0.7031 25 1 -0.3634 -0.0006 -1.0276 26 1 -0.3634 -0.8898 0.5143 27 1 -0.3633 0.8901 0.5135 28 1 4.0793 2.9674 -0.0003 29 1 8.2579 1.6032 -0.0104 30 1 9.8358 3.3915 -0.6874 31 1 9.4669 3.7542 1.0144 32 1 8.2257 5.0241 -1.4625 33 1 9.2190 5.8212 -0.2165 34 1 6.8788 6.3331 0.2483 35 1 7.4435 5.1793 1.4856 36 1 5.2982 4.3840 0.6973 37 1 5.7891 4.5773 -1.0014 38 1 4.1109 -6.7528 0.0017 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126601195.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:11 Heat of formation + Delta-G solvation = 1.897553 kcal Electronic energy + Delta-G solvation = -21807.241253 eV Core-core repulsion = 18481.049929 eV Total energy + Delta-G solvation = -3326.191324 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.52525 -38.78157 -37.91936 -34.87744 -32.74111 -31.79890 -31.16743 -30.31622 -27.15433 -25.88596 -24.86523 -23.81671 -22.40899 -21.21645 -20.10067 -18.50067 -17.74983 -17.55878 -16.99106 -15.85390 -15.58819 -15.43726 -15.16550 -14.80305 -14.19498 -14.09591 -13.98196 -13.79011 -13.30592 -13.19259 -12.75366 -12.70089 -12.62697 -12.15695 -11.99842 -11.56869 -11.36914 -11.31582 -11.19753 -11.16648 -10.81207 -10.65524 -10.60541 -10.12531 -9.86696 -9.45154 -9.34531 -9.15215 -8.83587 -8.75471 -7.86139 -6.70589 -6.54254 -4.27249 1.02688 1.55773 1.82337 2.48869 2.79570 2.96658 2.98429 3.11429 3.21007 3.39290 3.61000 4.04220 4.26621 4.33735 4.50280 4.52029 4.75109 4.84206 4.85589 4.98651 5.12402 5.16808 5.22009 5.41676 5.48238 5.51005 5.63951 5.74642 5.87437 5.93386 6.06167 6.13432 6.18487 6.28703 6.40129 6.42670 6.89991 7.18562 7.68707 7.99434 8.25534 8.44525 8.85495 10.53677 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.021348 B = 0.003195 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.258564 B = 8762.309238 C =10019.958491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.032 3.968 3 N -0.482 5.482 4 C 0.193 3.807 5 N -0.612 5.612 6 C 0.541 3.459 7 O -0.507 6.507 8 C -0.172 4.172 9 C -0.061 4.061 10 C -0.097 4.097 11 C -0.124 4.124 12 C -0.118 4.118 13 C -0.087 4.087 14 S 0.233 5.767 15 C -0.240 4.240 16 S 0.053 5.947 17 C -0.544 4.544 18 H 0.105 0.895 19 C 0.102 3.898 20 N -0.858 5.858 21 Si 0.852 3.148 22 H -0.261 1.261 23 H -0.265 1.265 24 H -0.236 1.236 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.415 0.585 29 H 0.129 0.871 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.737 20.548 0.098 21.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.110 4.110 3 N -0.204 5.204 4 C -0.177 4.177 5 N -0.261 5.261 6 C 0.329 3.671 7 O -0.383 6.383 8 C -0.176 4.176 9 C -0.081 4.081 10 C -0.134 4.134 11 C -0.161 4.161 12 C -0.155 4.155 13 C -0.124 4.124 14 S 0.478 5.522 15 C -0.477 4.477 16 S 0.300 5.700 17 C -0.693 4.693 18 H 0.122 0.878 19 C -0.110 4.110 20 N -0.491 5.491 21 Si 0.676 3.324 22 H -0.186 1.186 23 H -0.190 1.190 24 H -0.160 1.160 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.253 0.747 29 H 0.146 0.854 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.743 18.947 0.094 19.532 hybrid contribution -0.298 0.300 -0.019 0.423 sum 4.445 19.247 0.074 19.754 Atomic orbital electron populations 1.20146 0.88004 1.02202 1.01905 1.19111 0.96777 0.84614 1.10518 1.65879 1.02847 1.32176 1.19522 1.23975 0.90036 0.93519 1.10162 1.42357 1.04465 1.08063 1.71189 1.18780 0.81422 0.90042 0.76857 1.90804 1.77058 1.22071 1.48350 1.20425 0.93726 0.93977 1.09424 1.22948 0.93221 1.01446 0.90478 1.20623 0.96576 0.93416 1.02787 1.21646 0.97481 0.96580 1.00423 1.21574 0.94966 0.98700 1.00297 1.20434 0.98701 0.90778 1.02457 1.86191 1.00508 0.94397 1.71057 1.28176 1.01776 1.04459 1.13240 1.82437 1.13473 0.89188 1.84868 1.22664 0.92416 0.94484 1.59708 0.87777 1.24744 0.97375 0.96227 0.92634 1.70012 1.26459 1.07653 1.44991 0.86810 0.83890 0.81346 0.80363 1.18563 1.19001 1.15991 0.91706 0.91090 0.91726 0.74705 0.85367 0.89833 0.89560 0.91401 0.91256 0.91114 0.91373 0.90594 0.90128 0.91332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.06 10.02 36.01 0.36 -0.70 16 2 C 0.03 0.66 6.73 -83.97 -0.57 0.09 16 3 N -0.48 -9.64 10.55 -9.81 -0.10 -9.74 16 4 C 0.19 3.78 8.39 -87.31 -0.73 3.05 16 5 N -0.61 -9.33 5.32 -12.89 -0.07 -9.40 16 6 C 0.54 8.27 7.67 -12.70 -0.10 8.18 16 7 O -0.51 -9.79 13.45 5.25 0.07 -9.72 16 8 C -0.17 -1.88 5.78 -103.17 -0.60 -2.47 16 9 C -0.06 -0.62 9.41 -36.42 -0.34 -0.96 16 10 C -0.10 -0.65 6.11 -28.17 -0.17 -0.83 16 11 C -0.12 -0.72 6.00 -26.54 -0.16 -0.88 16 12 C -0.12 -0.71 5.99 -26.55 -0.16 -0.87 16 13 C -0.09 -0.66 5.02 -28.18 -0.14 -0.80 16 14 S 0.23 5.30 18.34 -107.50 -1.97 3.33 16 15 C -0.24 -5.53 6.67 29.47 0.20 -5.34 16 16 S 0.05 1.28 18.70 -107.50 -2.01 -0.73 16 17 C -0.54 -15.32 9.80 30.80 0.30 -15.02 16 18 H 0.10 3.15 6.21 -52.48 -0.33 2.82 16 19 C 0.10 2.83 5.49 -17.49 -0.10 2.74 16 20 N -0.86 -24.96 13.98 55.47 0.78 -24.18 16 21 Si 0.85 19.83 27.73 -169.99 -4.71 15.12 16 22 H -0.26 -5.96 7.11 56.52 0.40 -5.56 16 23 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 24 H -0.24 -5.25 6.73 56.52 0.38 -4.87 16 25 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.07 1.18 7.38 -51.92 -0.38 0.79 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.41 4.87 7.02 -40.82 -0.29 4.58 16 29 H 0.13 1.50 7.16 -52.49 -0.38 1.12 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 33 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 36 H 0.08 0.53 7.20 -51.93 -0.37 0.16 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.28 7.38 8.32 -40.82 -0.34 7.04 16 LS Contribution 338.64 15.07 5.10 5.10 Total: -1.00 -32.49 338.64 -9.83 -42.32 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -4.70 Total: 1.72 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: -2.20 Total: -13.82 kcal Atomic # 7 Polarization: -43.92 SS G_CDS: 0.60 Total: -43.32 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.07 Total: -9.72 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -4.71 Total: 15.12 kcal Atomic # 16 Polarization: 6.59 SS G_CDS: -3.98 Total: 2.60 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.49 -9.83 -42.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126601195.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.216 kcal (2) G-P(sol) polarization free energy of solvation -32.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds