Wall clock time and date at job start Tue Mar 31 2020 13:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31567 * 122.22900 * 2 1 4 4 C 1.29980 * 117.13520 * 179.97438 * 3 2 1 5 5 N 1.38746 * 125.36588 * 179.97438 * 4 3 2 6 6 C 1.34775 * 119.99831 * 180.02562 * 5 4 3 7 7 O 1.21626 * 120.00279 * 0.02562 * 6 5 4 8 8 C 1.47034 * 119.99650 * 180.02562 * 6 5 4 9 9 C 1.31421 * 117.96329 * 180.11551 * 8 6 5 10 10 C 1.50101 * 123.72584 * 180.55123 * 9 8 6 11 11 C 1.53008 * 110.13236 * 342.70451 * 10 9 8 12 12 C 1.53358 * 108.51318 * 49.75616 * 11 10 9 13 13 C 1.50094 * 118.10909 * 0.02562 * 8 6 5 14 14 S 1.76137 * 109.26893 * 0.23982 * 4 3 2 15 15 C 1.34677 * 122.22701 * 179.97438 * 2 1 3 16 16 S 1.76199 * 125.93565 * 0.02562 * 15 2 1 17 17 C 1.76191 * 100.00162 * 179.97438 * 16 15 2 18 18 H 1.08004 * 120.00396 * 0.02562 * 17 16 15 19 19 C 1.38432 * 120.00135 * 179.97438 * 17 16 15 20 20 N 1.31813 * 120.00130 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 119.99790 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.46895 * 89.99931 * 21 19 17 23 23 H 1.48496 * 109.46900 * 209.99894 * 21 19 17 24 24 H 1.48501 * 109.47120 * 330.00195 * 21 19 17 25 25 H 1.09000 * 109.47571 * 90.03176 * 1 2 3 26 26 H 1.09010 * 109.47085 * 210.02891 * 1 2 3 27 27 H 1.08992 * 109.47082 * 330.02172 * 1 2 3 28 28 H 0.97001 * 120.00261 * 0.02562 * 5 4 3 29 29 H 1.07995 * 118.16839 * 0.39893 * 9 8 6 30 30 H 1.08995 * 109.36168 * 222.49686 * 10 9 8 31 31 H 1.08999 * 109.24750 * 102.83485 * 10 9 8 32 32 H 1.09004 * 109.62916 * 290.04882 * 11 10 9 33 33 H 1.09003 * 109.79122 * 169.56056 * 11 10 9 34 34 H 1.09004 * 109.62957 * 172.24363 * 12 11 10 35 35 H 1.09005 * 109.63014 * 51.65599 * 12 11 10 36 36 H 1.09002 * 109.36278 * 42.60288 * 13 8 6 37 37 H 1.08998 * 109.35549 * 282.87584 * 13 8 6 38 38 H 0.96998 * 119.99884 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2087 1.1130 0.0000 4 6 3.5033 0.9976 0.0005 5 7 4.4037 2.0532 0.0001 6 6 5.7290 1.8085 0.0002 7 8 6.1358 0.6623 0.0002 8 6 6.6831 2.9273 0.0003 9 6 7.9662 2.6429 -0.0019 10 6 9.0499 3.6814 0.0099 11 6 8.4814 5.0406 -0.4030 12 6 7.2211 5.3137 0.4270 13 6 6.1346 4.3244 0.0009 14 16 3.9347 -0.7102 -0.0059 15 6 2.2252 -1.1393 0.0005 16 16 1.5698 -2.7748 0.0006 17 6 3.0666 -3.7043 0.0006 18 1 4.0188 -3.1947 0.0009 19 6 3.0222 -5.0879 0.0012 20 7 4.1420 -5.7833 0.0017 21 14 1.3753 -5.9695 0.0027 22 1 0.9379 -6.2037 -1.3969 23 1 1.5117 -7.2718 0.7032 24 1 0.3672 -5.1338 0.7031 25 1 -0.3634 -0.0006 -1.0276 26 1 -0.3634 -0.8898 0.5143 27 1 -0.3633 0.8901 0.5135 28 1 4.0793 2.9674 -0.0003 29 1 8.2579 1.6032 -0.0104 30 1 9.8358 3.3915 -0.6874 31 1 9.4669 3.7542 1.0144 32 1 8.2257 5.0241 -1.4625 33 1 9.2190 5.8212 -0.2165 34 1 6.8788 6.3331 0.2483 35 1 7.4435 5.1793 1.4856 36 1 5.2982 4.3840 0.6973 37 1 5.7891 4.5773 -1.0014 38 1 4.1109 -6.7528 0.0017 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126601195.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:10 Heat of formation + Delta-G solvation = -18.373425 kcal Electronic energy + Delta-G solvation = -21808.120269 eV Core-core repulsion = 18481.049929 eV Total energy + Delta-G solvation = -3327.070340 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.78542 -40.32887 -38.78280 -36.32442 -34.83687 -32.76732 -31.94436 -31.46987 -28.81943 -27.92475 -26.10262 -24.57616 -23.37998 -22.49674 -21.50408 -20.11208 -19.20636 -18.69333 -18.26737 -17.47728 -17.25860 -16.90439 -16.69010 -15.71257 -15.68533 -15.30051 -15.02156 -14.71455 -14.54669 -14.49051 -14.00473 -13.62945 -13.51270 -13.40584 -13.28447 -13.22650 -13.18607 -13.09831 -12.47263 -12.18895 -11.94838 -11.80435 -11.64355 -11.36220 -11.31924 -11.20754 -10.88150 -10.63262 -10.58624 -10.16482 -9.63490 -8.62920 -8.54794 -6.36168 -0.39988 0.11897 0.29845 0.74136 1.03908 1.28190 1.38509 1.51031 1.64341 1.66003 2.13109 2.13679 2.49145 2.75812 3.32838 3.66636 3.69601 4.05684 4.10787 4.20045 4.34551 4.37095 4.61119 4.64671 4.66178 4.83955 4.85403 4.91210 4.92384 5.01246 5.04952 5.15433 5.26964 5.41795 5.43445 5.48945 5.53324 5.59463 5.95559 6.06303 6.70490 6.75118 6.77748 8.49892 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.021348 B = 0.003195 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.258564 B = 8762.309238 C =10019.958491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.053 3.947 3 N -0.484 5.484 4 C 0.230 3.770 5 N -0.599 5.599 6 C 0.537 3.463 7 O -0.550 6.550 8 C -0.180 4.180 9 C -0.052 4.052 10 C -0.095 4.095 11 C -0.122 4.122 12 C -0.115 4.115 13 C -0.085 4.085 14 S 0.162 5.838 15 C -0.276 4.276 16 S 0.064 5.936 17 C -0.568 4.568 18 H 0.066 0.934 19 C 0.048 3.952 20 N -0.908 5.908 21 Si 0.915 3.085 22 H -0.252 1.252 23 H -0.253 1.253 24 H -0.219 1.219 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.435 0.565 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.424 23.931 0.128 24.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.089 4.089 3 N -0.206 5.206 4 C -0.142 4.142 5 N -0.250 5.250 6 C 0.328 3.672 7 O -0.429 6.429 8 C -0.183 4.183 9 C -0.072 4.072 10 C -0.132 4.132 11 C -0.160 4.160 12 C -0.153 4.153 13 C -0.122 4.122 14 S 0.408 5.592 15 C -0.511 4.511 16 S 0.309 5.691 17 C -0.717 4.717 18 H 0.084 0.916 19 C -0.159 4.159 20 N -0.543 5.543 21 Si 0.734 3.266 22 H -0.176 1.176 23 H -0.177 1.177 24 H -0.142 1.142 25 H 0.102 0.898 26 H 0.093 0.907 27 H 0.108 0.892 28 H 0.278 0.722 29 H 0.121 0.879 30 H 0.113 0.887 31 H 0.119 0.881 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.110 0.890 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.439 22.409 0.125 22.672 hybrid contribution 0.327 -0.428 -0.035 0.540 sum 3.767 21.982 0.090 22.302 Atomic orbital electron populations 1.20329 0.84896 1.03608 1.03563 1.19875 0.98741 0.83858 1.06398 1.66105 1.02367 1.31306 1.20832 1.24231 0.90423 0.93178 1.06349 1.42486 1.04008 1.07992 1.70546 1.19747 0.81673 0.90690 0.75122 1.90804 1.77578 1.24387 1.50093 1.20482 0.92731 0.94075 1.11010 1.23196 0.94070 1.01460 0.88437 1.20729 0.95488 0.93004 1.03957 1.21671 0.97882 0.96132 1.00284 1.21596 0.94379 0.99061 1.00245 1.20533 0.99518 0.88710 1.03469 1.86570 1.02294 0.97810 1.72549 1.28131 1.01412 1.04632 1.16941 1.81841 1.10696 0.89258 1.87280 1.22849 0.93266 0.95490 1.60063 0.91595 1.25749 1.01466 0.96827 0.91843 1.70121 1.29133 1.08274 1.46813 0.85880 0.79132 0.80481 0.81089 1.17592 1.17723 1.14187 0.89756 0.90746 0.89230 0.72204 0.87883 0.88684 0.88141 0.91517 0.89299 0.89185 0.91389 0.89815 0.89014 0.90838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.99 10.02 71.24 0.71 -1.28 16 2 C 0.05 2.11 6.73 41.78 0.28 2.39 16 3 N -0.48 -18.52 10.55 -184.96 -1.95 -20.47 16 4 C 0.23 8.92 8.39 179.19 1.50 10.42 16 5 N -0.60 -17.62 5.32 -312.96 -1.67 -19.29 16 6 C 0.54 16.43 7.67 86.55 0.66 17.10 16 7 O -0.55 -22.28 13.45 -4.11 -0.06 -22.34 16 8 C -0.18 -3.71 5.78 -18.19 -0.11 -3.81 16 9 C -0.05 -1.00 9.41 25.05 0.24 -0.76 16 10 C -0.10 -1.06 6.11 29.66 0.18 -0.88 16 11 C -0.12 -1.00 6.00 30.72 0.18 -0.82 16 12 C -0.12 -0.99 5.99 30.71 0.18 -0.80 16 13 C -0.09 -1.06 5.02 29.66 0.15 -0.91 16 14 S 0.16 7.72 18.34 -56.49 -1.04 6.68 16 15 C -0.28 -12.91 6.67 67.00 0.45 -12.46 16 16 S 0.06 3.14 18.70 -56.49 -1.06 2.09 16 17 C -0.57 -33.61 9.80 67.87 0.67 -32.94 16 18 H 0.07 4.31 6.21 -2.91 -0.02 4.29 16 19 C 0.05 2.77 5.49 84.74 0.47 3.23 16 20 N -0.91 -55.36 13.98 21.59 0.30 -55.06 16 21 Si 0.92 41.28 27.73 68.60 1.90 43.18 16 22 H -0.25 -10.91 7.11 99.48 0.71 -10.20 16 23 H -0.25 -10.80 7.11 99.48 0.71 -10.10 16 24 H -0.22 -9.17 6.73 99.48 0.67 -8.50 16 25 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 26 H 0.07 2.28 7.38 -2.38 -0.02 2.26 16 27 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.44 9.18 7.02 -92.71 -0.65 8.53 16 29 H 0.10 2.52 7.16 -2.91 -0.02 2.50 16 30 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.07 0.59 8.12 -2.38 -0.02 0.57 16 33 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.09 0.48 8.14 -2.38 -0.02 0.46 16 35 H 0.07 0.61 8.12 -2.38 -0.02 0.59 16 36 H 0.08 0.91 7.20 -2.39 -0.02 0.89 16 37 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.28 15.67 8.32 -92.71 -0.77 14.90 16 Total: -1.00 -75.23 338.64 2.42 -72.81 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 0.41 Total: 13.93 kcal Atomic # 6 Polarization: -27.10 SS G_CDS: 5.57 Total: -21.53 kcal Atomic # 7 Polarization: -91.51 SS G_CDS: -3.32 Total: -94.82 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.06 Total: -22.34 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 1.90 Total: 43.18 kcal Atomic # 16 Polarization: 10.86 SS G_CDS: -2.09 Total: 8.77 kcal Total: -75.23 2.42 -72.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126601195.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.432 kcal (2) G-P(sol) polarization free energy of solvation -75.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds