Wall clock time and date at job start Tue Mar 31 2020 14:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 120.00078 * 2 1 4 4 H 1.48501 * 109.46865 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46827 * 299.99221 * 3 2 1 6 6 H 1.48490 * 109.47673 * 59.99750 * 3 2 1 7 7 C 1.38712 * 119.99627 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99360 * 180.02562 * 7 2 1 9 9 O 1.34806 * 120.00147 * 0.02562 * 7 2 1 10 10 C 1.35506 * 116.99956 * 174.92640 * 9 7 2 11 11 C 1.38831 * 120.16583 * 5.65955 * 10 9 7 12 12 C 1.38023 * 120.07636 * 180.02562 * 11 10 9 13 13 C 1.38590 * 120.41724 * 359.74768 * 12 11 10 14 14 C 1.37802 * 120.33088 * 0.50934 * 13 12 11 15 15 C 1.39737 * 119.91405 * 359.49257 * 14 13 12 16 16 C 1.47384 * 120.20594 * 180.27131 * 15 14 13 17 17 O 1.21527 * 120.00099 * 180.02562 * 16 15 14 18 18 O 1.34767 * 119.99971 * 0.02562 * 16 15 14 19 19 C 1.35908 * 117.00159 * 175.01213 * 18 16 15 20 20 C 1.39473 * 119.72833 * 75.31988 * 19 18 16 21 21 C 1.36329 * 120.58159 * 179.97438 * 20 19 18 22 22 C 1.39981 * 119.85336 * 0.02562 * 21 20 19 23 23 C 1.45963 * 133.87296 * 179.97438 * 22 21 20 24 24 N 1.30235 * 107.79603 * 180.02562 * 23 22 21 25 25 N 1.39865 * 110.09342 * 359.97438 * 24 23 22 26 26 H 0.96998 * 125.45907 * 180.02562 * 25 24 23 27 27 C 1.37059 * 109.07221 * 0.02562 * 25 24 23 28 28 C 1.38088 * 119.72796 * 255.04902 * 19 18 16 29 29 H 0.96996 * 119.99634 * 0.02562 * 1 2 3 30 30 H 1.07994 * 119.95955 * 0.02562 * 11 10 9 31 31 H 1.07998 * 119.79209 * 180.02562 * 12 11 10 32 32 H 1.07999 * 119.83830 * 180.27939 * 13 12 11 33 33 H 1.08003 * 120.04428 * 179.76557 * 14 13 12 34 34 H 1.07999 * 119.70949 * 359.97438 * 20 19 18 35 35 H 1.08001 * 120.07196 * 180.02562 * 21 20 19 36 36 H 1.08001 * 126.10101 * 0.06239 * 23 22 21 37 37 H 1.07997 * 120.14839 * 359.97438 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8906 2.3962 -1.2126 6 1 1.8905 2.3965 1.2123 7 6 2.0087 -1.2013 0.0005 8 1 3.0887 -1.2013 0.0010 9 8 1.3346 -2.3687 0.0005 10 6 2.0685 -3.5029 -0.1057 11 6 3.4554 -3.4404 -0.0902 12 6 4.2011 -4.5967 -0.1991 13 6 3.5745 -5.8271 -0.3192 14 6 2.1991 -5.9083 -0.3418 15 6 1.4305 -4.7464 -0.2325 16 6 -0.0410 -4.8264 -0.2499 17 8 -0.7058 -3.8135 -0.1551 18 8 -0.6494 -6.0228 -0.3710 19 6 -2.0051 -6.0382 -0.2755 20 6 -2.7788 -5.5824 -1.3427 21 6 -4.1399 -5.5906 -1.2658 22 6 -4.7696 -6.0593 -0.1068 23 6 -6.1642 -6.2027 0.2993 24 7 -6.1792 -6.7002 1.5028 25 7 -4.8715 -6.9099 1.9523 26 1 -4.6253 -7.2727 2.8176 27 6 -3.9938 -6.5207 0.9742 28 6 -2.6052 -6.5102 0.8751 29 1 -0.4849 0.8400 -0.0004 30 1 3.9512 -2.4860 0.0072 31 1 5.2797 -4.5428 -0.1861 32 1 4.1672 -6.7263 -0.3992 33 1 1.7157 -6.8692 -0.4394 34 1 -2.2954 -5.2199 -2.2378 35 1 -4.7310 -5.2361 -2.0973 36 1 -7.0293 -5.9430 -0.2928 37 1 -2.0000 -6.8660 1.6958 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000150998928.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:34 Heat of formation + Delta-G solvation = 21.261582 kcal Electronic energy + Delta-G solvation = -25830.016200 eV Core-core repulsion = 21926.467741 eV Total energy + Delta-G solvation = -3903.548459 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.37618 -40.39332 -39.07564 -36.95159 -36.46978 -35.52681 -32.48552 -32.43721 -30.89175 -29.49047 -29.19294 -29.00447 -25.59532 -24.36325 -22.96760 -22.36949 -21.70999 -21.44444 -20.35126 -18.22083 -18.11184 -17.57929 -17.22769 -16.46962 -16.22935 -15.46403 -14.86731 -14.76427 -14.62072 -14.48664 -14.34334 -14.04475 -13.86147 -13.70333 -13.48289 -12.99149 -12.66538 -12.47428 -11.83381 -11.80706 -11.49471 -11.36601 -11.21525 -11.04152 -10.99800 -10.86938 -10.52217 -10.45463 -10.38336 -9.91047 -9.43605 -9.00149 -8.45857 -8.41477 -8.07313 -7.46732 -6.57936 -4.17820 0.77850 1.45876 1.50004 2.22833 2.33729 2.57144 3.04988 3.06032 3.11988 3.21622 3.29797 3.83094 3.89733 4.45438 4.52382 4.58148 4.79158 4.93449 5.04065 5.06031 5.21587 5.35923 5.49273 5.55757 5.57266 5.74477 5.87371 6.02219 6.05761 6.21810 6.32123 6.46549 6.48354 6.55272 6.66573 6.83254 6.97927 7.07871 7.14297 7.20897 7.22116 7.47776 7.57136 7.80129 8.59678 8.81856 9.49341 10.55412 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.012557 B = 0.003657 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.253404 B = 7654.985433 C = 9370.989814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.045 3.955 3 Si 0.944 3.056 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.403 4.403 8 H 0.098 0.902 9 O -0.124 6.124 10 C 0.192 3.808 11 C -0.237 4.237 12 C -0.042 4.042 13 C -0.234 4.234 14 C -0.015 4.015 15 C -0.217 4.217 16 C 0.497 3.503 17 O -0.455 6.455 18 O -0.308 6.308 19 C 0.159 3.841 20 C -0.154 4.154 21 C -0.025 4.025 22 C -0.186 4.186 23 C 0.080 3.920 24 N -0.255 5.255 25 N -0.511 5.511 26 H 0.439 0.561 27 C 0.142 3.858 28 C -0.153 4.153 29 H 0.273 0.727 30 H 0.135 0.865 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.125 0.875 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.198 0.802 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.485 -11.847 -0.968 12.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.163 4.163 3 Si 0.767 3.233 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.478 4.478 8 H 0.115 0.885 9 O -0.022 6.022 10 C 0.132 3.868 11 C -0.256 4.256 12 C -0.060 4.060 13 C -0.253 4.253 14 C -0.033 4.033 15 C -0.220 4.220 16 C 0.343 3.657 17 O -0.338 6.338 18 O -0.225 6.225 19 C 0.114 3.886 20 C -0.174 4.174 21 C -0.046 4.046 22 C -0.194 4.194 23 C -0.118 4.118 24 N -0.068 5.068 25 N -0.227 5.227 26 H 0.284 0.716 27 C 0.026 3.974 28 C -0.175 4.175 29 H 0.083 0.917 30 H 0.153 0.847 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.143 0.857 34 H 0.152 0.848 35 H 0.153 0.847 36 H 0.214 0.786 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.946 -11.624 0.066 12.633 hybrid contribution 1.166 0.902 -0.130 1.480 sum -3.780 -10.722 -0.064 11.369 Atomic orbital electron populations 1.70125 1.06066 1.27996 1.41750 1.25443 0.95853 0.99124 0.95917 0.85615 0.79218 0.79936 0.78491 1.18826 1.19862 1.19905 1.21601 0.92080 0.80796 1.53348 0.88471 1.84130 1.33971 1.11257 1.72796 1.19192 0.90036 0.86855 0.90758 1.21115 0.92914 0.99573 1.12021 1.20989 0.98869 0.92252 0.93907 1.20546 0.94048 0.97269 1.13391 1.20977 0.93635 0.96163 0.92549 1.17881 0.87416 0.92747 1.23920 1.21465 0.89148 0.80206 0.74909 1.91055 1.65428 1.34166 1.43115 1.84612 1.17572 1.36057 1.84269 1.18152 0.81690 0.96183 0.92563 1.20884 0.93878 1.02994 0.99670 1.20130 0.93526 0.95261 0.95670 1.19933 0.92728 1.10194 0.96570 1.25075 0.96037 0.97983 0.92701 1.76517 0.99320 1.17657 1.13294 1.45872 1.01485 1.58882 1.16447 0.71635 1.18375 0.91437 0.97513 0.90025 1.19840 0.90677 1.08635 0.98366 0.91651 0.84719 0.86851 0.86850 0.85663 0.84819 0.84692 0.78554 0.84799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.22 13.67 55.48 0.76 -23.46 16 2 C 0.05 1.22 5.49 -17.51 -0.10 1.12 16 3 Si 0.94 19.80 29.55 -169.99 -5.02 14.78 16 4 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 5 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.40 -10.97 9.49 30.91 0.29 -10.67 16 8 H 0.10 2.38 5.21 -52.49 -0.27 2.11 16 9 O -0.12 -3.52 7.84 -20.99 -0.16 -3.68 16 10 C 0.19 4.59 6.66 -38.57 -0.26 4.33 16 11 C -0.24 -4.85 9.16 -39.44 -0.36 -5.22 16 12 C -0.04 -0.70 10.03 -39.53 -0.40 -1.09 16 13 C -0.23 -3.72 10.02 -39.61 -0.40 -4.12 16 14 C -0.01 -0.26 9.61 -39.18 -0.38 -0.64 16 15 C -0.22 -4.68 5.89 -104.83 -0.62 -5.29 16 16 C 0.50 11.07 7.75 34.45 0.27 11.33 16 17 O -0.45 -12.07 14.64 -26.60 -0.39 -12.46 16 18 O -0.31 -5.72 9.26 -24.90 -0.23 -5.95 16 19 C 0.16 2.74 5.18 -39.18 -0.20 2.54 16 20 C -0.15 -2.46 9.38 -39.81 -0.37 -2.83 16 21 C -0.03 -0.34 10.05 -39.62 -0.40 -0.74 16 22 C -0.19 -2.56 6.36 -105.17 -0.67 -3.23 16 23 C 0.08 0.92 12.28 -15.14 -0.19 0.73 16 24 N -0.25 -3.27 12.55 31.87 0.40 -2.87 16 25 N -0.51 -6.38 7.37 32.35 0.24 -6.15 16 26 H 0.44 4.15 8.96 -182.78 -1.64 2.51 16 27 C 0.14 2.05 7.33 -84.18 -0.62 1.43 16 28 C -0.15 -2.34 10.01 -39.27 -0.39 -2.74 16 29 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.14 2.69 5.64 -52.49 -0.30 2.40 16 31 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 32 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 33 H 0.13 1.85 7.61 -52.48 -0.40 1.45 16 34 H 0.13 2.07 8.06 -52.49 -0.42 1.65 16 35 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 36 H 0.20 1.41 8.06 -52.49 -0.42 0.99 16 37 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 334.96 15.07 5.05 5.05 Total: -1.00 -34.24 334.96 -8.42 -42.67 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -4.28 Total: 7.16 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: -4.78 Total: -15.08 kcal Atomic # 7 Polarization: -33.87 SS G_CDS: 1.40 Total: -32.48 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -0.78 Total: -22.10 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.24 -8.42 -42.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150998928.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.927 kcal (2) G-P(sol) polarization free energy of solvation -34.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds