Wall clock time and date at job start Tue Mar 31 2020 14:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 120.00078 * 2 1 4 4 H 1.48501 * 109.46865 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46827 * 299.99221 * 3 2 1 6 6 H 1.48490 * 109.47673 * 59.99750 * 3 2 1 7 7 C 1.38712 * 119.99627 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99360 * 180.02562 * 7 2 1 9 9 O 1.34806 * 120.00147 * 0.02562 * 7 2 1 10 10 C 1.35506 * 116.99956 * 174.92640 * 9 7 2 11 11 C 1.38831 * 120.16583 * 5.65955 * 10 9 7 12 12 C 1.38023 * 120.07636 * 180.02562 * 11 10 9 13 13 C 1.38590 * 120.41724 * 359.74768 * 12 11 10 14 14 C 1.37802 * 120.33088 * 0.50934 * 13 12 11 15 15 C 1.39737 * 119.91405 * 359.49257 * 14 13 12 16 16 C 1.47384 * 120.20594 * 180.27131 * 15 14 13 17 17 O 1.21527 * 120.00099 * 180.02562 * 16 15 14 18 18 O 1.34767 * 119.99971 * 0.02562 * 16 15 14 19 19 C 1.35908 * 117.00159 * 175.01213 * 18 16 15 20 20 C 1.39473 * 119.72833 * 75.31988 * 19 18 16 21 21 C 1.36329 * 120.58159 * 179.97438 * 20 19 18 22 22 C 1.39981 * 119.85336 * 0.02562 * 21 20 19 23 23 C 1.45963 * 133.87296 * 179.97438 * 22 21 20 24 24 N 1.30235 * 107.79603 * 180.02562 * 23 22 21 25 25 N 1.39865 * 110.09342 * 359.97438 * 24 23 22 26 26 H 0.96998 * 125.45907 * 180.02562 * 25 24 23 27 27 C 1.37059 * 109.07221 * 0.02562 * 25 24 23 28 28 C 1.38088 * 119.72796 * 255.04902 * 19 18 16 29 29 H 0.96996 * 119.99634 * 0.02562 * 1 2 3 30 30 H 1.07994 * 119.95955 * 0.02562 * 11 10 9 31 31 H 1.07998 * 119.79209 * 180.02562 * 12 11 10 32 32 H 1.07999 * 119.83830 * 180.27939 * 13 12 11 33 33 H 1.08003 * 120.04428 * 179.76557 * 14 13 12 34 34 H 1.07999 * 119.70949 * 359.97438 * 20 19 18 35 35 H 1.08001 * 120.07196 * 180.02562 * 21 20 19 36 36 H 1.08001 * 126.10101 * 0.06239 * 23 22 21 37 37 H 1.07997 * 120.14839 * 359.97438 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8906 2.3962 -1.2126 6 1 1.8905 2.3965 1.2123 7 6 2.0087 -1.2013 0.0005 8 1 3.0887 -1.2013 0.0010 9 8 1.3346 -2.3687 0.0005 10 6 2.0685 -3.5029 -0.1057 11 6 3.4554 -3.4404 -0.0902 12 6 4.2011 -4.5967 -0.1991 13 6 3.5745 -5.8271 -0.3192 14 6 2.1991 -5.9083 -0.3418 15 6 1.4305 -4.7464 -0.2325 16 6 -0.0410 -4.8264 -0.2499 17 8 -0.7058 -3.8135 -0.1551 18 8 -0.6494 -6.0228 -0.3710 19 6 -2.0051 -6.0382 -0.2755 20 6 -2.7788 -5.5824 -1.3427 21 6 -4.1399 -5.5906 -1.2658 22 6 -4.7696 -6.0593 -0.1068 23 6 -6.1642 -6.2027 0.2993 24 7 -6.1792 -6.7002 1.5028 25 7 -4.8715 -6.9099 1.9523 26 1 -4.6253 -7.2727 2.8176 27 6 -3.9938 -6.5207 0.9742 28 6 -2.6052 -6.5102 0.8751 29 1 -0.4849 0.8400 -0.0004 30 1 3.9512 -2.4860 0.0072 31 1 5.2797 -4.5428 -0.1861 32 1 4.1672 -6.7263 -0.3992 33 1 1.7157 -6.8692 -0.4394 34 1 -2.2954 -5.2199 -2.2378 35 1 -4.7310 -5.2361 -2.0973 36 1 -7.0293 -5.9430 -0.2928 37 1 -2.0000 -6.8660 1.6958 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000150998928.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:33 Heat of formation + Delta-G solvation = -0.143125 kcal Electronic energy + Delta-G solvation = -25830.944378 eV Core-core repulsion = 21926.467741 eV Total energy + Delta-G solvation = -3904.476637 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.58039 -41.83791 -40.71201 -38.47273 -38.09641 -36.95218 -34.38449 -33.51122 -32.43798 -30.67672 -30.59296 -30.32526 -27.49185 -25.87639 -24.15929 -23.78414 -23.01409 -22.64032 -21.82204 -19.94775 -19.56459 -19.11622 -18.56798 -17.92415 -17.69542 -16.87102 -16.42798 -16.20020 -15.99073 -15.85730 -15.66146 -15.48135 -15.31871 -15.13394 -14.84659 -14.50384 -14.27520 -13.75629 -13.58470 -13.17936 -13.01356 -12.76164 -12.64219 -12.58283 -12.37140 -12.12644 -12.09685 -11.79629 -11.68831 -11.42622 -11.16481 -10.87794 -9.95879 -9.66697 -9.16661 -9.13821 -8.49517 -6.20642 -0.40890 -0.09895 0.30241 0.67528 1.25601 1.33701 1.43712 1.51335 1.53336 1.67800 1.91884 2.13347 2.67164 2.80513 3.12866 3.34044 3.48633 3.62984 3.68585 3.76794 4.00059 4.06805 4.19366 4.24041 4.38377 4.50083 4.59817 4.63590 4.76628 4.92827 5.04351 5.06134 5.11125 5.21792 5.28868 5.40588 5.45152 5.57023 5.65381 5.75145 5.91949 6.10398 6.20763 6.50710 6.88933 6.94925 7.69167 8.70483 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.012557 B = 0.003657 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.253404 B = 7654.985433 C = 9370.989814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.019 4.019 3 Si 1.022 2.978 4 H -0.243 1.243 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.427 4.427 8 H 0.113 0.887 9 O -0.187 6.187 10 C 0.160 3.840 11 C -0.255 4.255 12 C -0.024 4.024 13 C -0.202 4.202 14 C -0.012 4.012 15 C -0.236 4.236 16 C 0.499 3.501 17 O -0.508 6.508 18 O -0.293 6.293 19 C 0.120 3.880 20 C -0.179 4.179 21 C -0.014 4.014 22 C -0.197 4.197 23 C 0.095 3.905 24 N -0.268 5.268 25 N -0.507 5.507 26 H 0.450 0.550 27 C 0.130 3.870 28 C -0.155 4.155 29 H 0.272 0.728 30 H 0.132 0.868 31 H 0.162 0.838 32 H 0.167 0.833 33 H 0.157 0.843 34 H 0.127 0.873 35 H 0.172 0.828 36 H 0.242 0.758 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.939 -14.263 -1.278 14.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.219 4.219 3 Si 0.841 3.159 4 H -0.166 1.166 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.502 4.502 8 H 0.130 0.870 9 O -0.089 6.089 10 C 0.105 3.895 11 C -0.274 4.274 12 C -0.042 4.042 13 C -0.221 4.221 14 C -0.030 4.030 15 C -0.238 4.238 16 C 0.347 3.653 17 O -0.395 6.395 18 O -0.210 6.210 19 C 0.076 3.924 20 C -0.199 4.199 21 C -0.034 4.034 22 C -0.205 4.205 23 C -0.103 4.103 24 N -0.081 5.081 25 N -0.224 5.224 26 H 0.297 0.703 27 C 0.013 3.987 28 C -0.177 4.177 29 H 0.082 0.918 30 H 0.150 0.850 31 H 0.179 0.821 32 H 0.184 0.816 33 H 0.174 0.826 34 H 0.145 0.855 35 H 0.189 0.811 36 H 0.258 0.742 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.352 -14.145 -0.227 14.539 hybrid contribution 0.727 1.138 -0.047 1.351 sum -2.625 -13.008 -0.274 13.273 Atomic orbital electron populations 1.70307 1.08408 1.28785 1.46202 1.26776 0.96722 1.03132 0.95237 0.84490 0.78605 0.74341 0.78478 1.16562 1.19397 1.19511 1.22138 0.92948 0.81329 1.53800 0.86974 1.84139 1.35546 1.12390 1.76788 1.19932 0.91847 0.86774 0.90954 1.21299 0.91680 1.01351 1.13085 1.21555 1.01108 0.90954 0.90607 1.21225 0.93496 0.98834 1.08510 1.21410 0.94538 0.95762 0.91294 1.18345 0.87589 0.93655 1.24234 1.21782 0.89683 0.80427 0.73375 1.91032 1.66685 1.36262 1.45569 1.84580 1.18822 1.33898 1.83652 1.18510 0.80991 0.98670 0.94200 1.20994 0.95181 1.04233 0.99463 1.20480 0.92702 0.93536 0.96643 1.20337 0.94106 1.09702 0.96349 1.25793 0.96145 0.96151 0.92201 1.76531 0.99202 1.18325 1.14057 1.45947 1.01157 1.58588 1.16668 0.70347 1.18497 0.91342 0.97762 0.91100 1.19933 0.91544 1.08253 0.98002 0.91845 0.85011 0.82081 0.81587 0.82572 0.85495 0.81098 0.74199 0.83654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -57.11 13.67 21.62 0.30 -56.82 16 2 C -0.02 -1.07 5.49 84.85 0.47 -0.60 16 3 Si 1.02 42.48 29.55 68.60 2.03 44.51 16 4 H -0.24 -9.02 7.11 99.48 0.71 -8.32 16 5 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 6 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 7 C -0.43 -24.73 9.49 67.93 0.64 -24.09 16 8 H 0.11 5.76 5.21 -2.91 -0.02 5.74 16 9 O -0.19 -11.43 7.84 1.08 0.01 -11.42 16 10 C 0.16 7.99 6.66 22.92 0.15 8.14 16 11 C -0.26 -10.29 9.16 22.36 0.20 -10.08 16 12 C -0.02 -0.71 10.03 22.30 0.22 -0.48 16 13 C -0.20 -5.34 10.02 22.25 0.22 -5.11 16 14 C -0.01 -0.39 9.61 22.53 0.22 -0.17 16 15 C -0.24 -10.35 5.89 -20.00 -0.12 -10.46 16 16 C 0.50 23.47 7.75 70.23 0.54 24.01 16 17 O -0.51 -29.28 14.64 26.74 0.39 -28.89 16 18 O -0.29 -11.28 9.26 -0.32 0.00 -11.28 16 19 C 0.12 4.32 5.18 22.53 0.12 4.44 16 20 C -0.18 -5.91 9.38 22.12 0.21 -5.71 16 21 C -0.01 -0.36 10.05 22.25 0.22 -0.13 16 22 C -0.20 -5.18 6.36 -20.22 -0.13 -5.31 16 23 C 0.09 1.93 12.28 86.93 1.07 3.00 16 24 N -0.27 -6.36 12.55 -53.07 -0.67 -7.03 16 25 N -0.51 -12.16 7.37 -51.55 -0.38 -12.54 16 26 H 0.45 8.16 8.96 -213.47 -1.91 6.25 16 27 C 0.13 3.69 7.33 39.20 0.29 3.98 16 28 C -0.15 -4.86 10.01 22.47 0.22 -4.63 16 29 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 30 H 0.13 5.30 5.64 -2.91 -0.02 5.28 16 31 H 0.16 3.25 8.06 -2.91 -0.02 3.23 16 32 H 0.17 2.85 8.06 -2.91 -0.02 2.83 16 33 H 0.16 4.02 7.61 -2.91 -0.02 4.00 16 34 H 0.13 4.22 8.06 -2.91 -0.02 4.20 16 35 H 0.17 3.10 8.06 -2.91 -0.02 3.08 16 36 H 0.24 2.44 8.06 -2.91 -0.02 2.42 16 37 H 0.15 4.00 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -84.70 334.96 5.47 -79.23 By element: Atomic # 1 Polarization: 28.21 SS G_CDS: -0.76 Total: 27.45 kcal Atomic # 6 Polarization: -27.78 SS G_CDS: 4.56 Total: -23.22 kcal Atomic # 7 Polarization: -75.64 SS G_CDS: -0.75 Total: -76.39 kcal Atomic # 8 Polarization: -51.99 SS G_CDS: 0.40 Total: -51.59 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -84.70 5.47 -79.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150998928.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.087 kcal (2) G-P(sol) polarization free energy of solvation -84.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds