Wall clock time and date at job start Tue Mar 31 2020 14:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30873 * 1 3 3 Si 1.86796 * 120.00185 * 2 1 4 4 H 1.48499 * 109.47607 * 270.00183 * 3 2 1 5 5 H 1.48500 * 109.46900 * 30.00751 * 3 2 1 6 6 H 1.48506 * 109.47086 * 150.00154 * 3 2 1 7 7 C 1.39909 * 119.99766 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99765 * 175.58463 * 7 2 1 9 9 C 1.41141 * 120.00048 * 355.57760 * 7 2 1 10 10 C 1.40877 * 120.15884 * 214.77441 * 9 7 2 11 11 C 1.36362 * 119.82528 * 180.02562 * 10 9 7 12 12 C 1.39507 * 120.17161 * 0.02562 * 11 10 9 13 13 N 1.39123 * 119.84182 * 179.97438 * 12 11 10 14 14 C 1.34787 * 119.99619 * 35.31703 * 13 12 11 15 15 O 1.21592 * 119.99774 * 355.71802 * 14 13 12 16 16 C 1.47531 * 119.99719 * 175.70808 * 14 13 12 17 17 C 1.39703 * 120.21112 * 0.02562 * 16 14 13 18 18 C 1.37929 * 120.14150 * 180.27453 * 17 16 14 19 19 C 1.38413 * 120.38730 * 359.51425 * 18 17 16 20 20 C 1.38551 * 120.16474 * 0.45331 * 19 18 17 21 21 N 1.39514 * 133.31078 * 179.76639 * 20 19 18 22 22 H 0.97001 * 126.27129 * 0.02562 * 21 20 19 23 23 C 1.34784 * 107.45756 * 180.02562 * 21 20 19 24 24 O 1.21585 * 125.29703 * 179.97438 * 23 21 20 25 25 O 1.34272 * 109.41382 * 359.97438 * 23 21 20 26 26 C 1.35307 * 109.20674 * 0.02562 * 25 23 21 27 27 C 1.39513 * 120.32707 * 0.27318 * 12 11 10 28 28 C 1.36369 * 120.16397 * 359.44073 * 27 12 11 29 29 H 0.97003 * 119.99520 * 359.97438 * 1 2 3 30 30 H 1.07992 * 120.08992 * 0.02562 * 10 9 7 31 31 H 1.08003 * 119.91721 * 179.97438 * 11 10 9 32 32 H 0.97001 * 120.00766 * 215.31843 * 13 12 11 33 33 H 1.07994 * 119.92993 * 359.97438 * 17 16 14 34 34 H 1.08000 * 119.80913 * 179.72206 * 18 17 16 35 35 H 1.08001 * 119.91316 * 180.28360 * 19 18 17 36 36 H 1.07995 * 119.92117 * 179.70962 * 27 12 11 37 37 H 1.07996 * 120.08646 * 180.27739 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4903 2.0465 -1.4000 5 1 1.4403 2.6525 0.7002 6 1 3.5404 1.4400 0.7000 7 6 2.0082 -1.2117 -0.0005 8 1 3.0858 -1.2130 -0.0725 9 6 1.3056 -2.4322 0.0932 10 6 1.8649 -3.5188 0.7940 11 6 1.1804 -4.6950 0.8798 12 6 -0.0703 -4.8241 0.2754 13 7 -0.7624 -6.0275 0.3668 14 6 -0.6814 -6.7679 1.4902 15 8 0.0571 -6.4240 2.3930 16 6 -1.4888 -7.9953 1.6246 17 6 -2.3383 -8.3946 0.5899 18 6 -3.0968 -9.5394 0.7194 19 6 -3.0159 -10.3066 1.8685 20 6 -2.1776 -9.9244 2.9033 21 7 -1.8900 -10.4718 4.1539 22 1 -2.2697 -11.2830 4.5263 23 6 -0.9878 -9.6671 4.7498 24 8 -0.5123 -9.8419 5.8550 25 8 -0.6957 -8.6422 3.9329 26 6 -1.4082 -8.7673 2.7895 27 6 -0.6277 -3.7545 -0.4256 28 6 0.0424 -2.5701 -0.5150 29 1 -0.4849 0.8401 0.0004 30 1 2.8331 -3.4205 1.2621 31 1 1.6079 -5.5291 1.4164 32 1 -1.3034 -6.3338 -0.3778 33 1 -2.4050 -7.8031 -0.3111 34 1 -3.7552 -9.8406 -0.0820 35 1 -3.6098 -11.2041 1.9598 36 1 -1.5943 -3.8631 -0.8950 37 1 -0.3923 -1.7415 -1.0542 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000151962579.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:16 Heat of formation + Delta-G solvation = -19.858198 kcal Electronic energy + Delta-G solvation = -25518.700839 eV Core-core repulsion = 21613.369292 eV Total energy + Delta-G solvation = -3905.331547 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.56450 -40.03130 -38.61843 -37.60001 -37.20621 -35.50688 -34.52933 -33.01953 -31.34474 -29.81339 -29.55574 -28.77735 -25.50015 -24.03613 -23.85270 -23.15383 -21.76031 -21.00323 -20.07633 -19.01603 -18.48733 -17.58180 -17.36364 -17.13262 -16.49130 -16.05519 -15.80280 -15.24549 -14.97004 -14.76266 -14.34357 -14.14778 -13.91856 -13.53601 -13.06828 -13.01435 -12.77031 -12.64437 -12.25146 -12.11518 -11.72897 -11.43861 -11.37895 -11.28149 -11.15911 -11.01445 -10.74123 -10.08204 -9.54220 -9.48859 -9.25104 -9.17411 -8.92096 -8.67010 -7.56783 -6.89178 -6.63820 -4.35804 0.27666 0.71445 1.96649 2.17154 2.51482 2.56918 2.84585 3.07615 3.09501 3.12271 3.18213 3.36827 3.65751 3.96987 3.99529 4.38233 4.54787 4.60457 4.69012 4.73652 4.80320 5.26823 5.37077 5.62903 5.66531 5.81097 5.98532 6.12448 6.16329 6.43108 6.69634 6.82341 6.88952 7.04678 7.17171 7.27336 7.40590 7.62018 7.69438 7.83043 8.04165 8.19209 8.29606 8.57621 8.66405 8.90958 8.97257 10.27125 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.024064 B = 0.002618 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.293813 B =10692.928555 C =11514.091521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.069 3.931 3 Si 0.916 3.084 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.459 4.459 8 H 0.076 0.924 9 C 0.102 3.898 10 C -0.205 4.205 11 C -0.083 4.083 12 C -0.001 4.001 13 N -0.639 5.639 14 C 0.534 3.466 15 O -0.509 6.509 16 C -0.083 4.083 17 C -0.078 4.078 18 C -0.104 4.104 19 C -0.083 4.083 20 C 0.059 3.941 21 N -0.649 5.649 22 H 0.443 0.557 23 C 0.635 3.365 24 O -0.484 6.484 25 O -0.209 6.209 26 C 0.094 3.906 27 C -0.117 4.117 28 C -0.142 4.142 29 H 0.278 0.722 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.395 0.605 33 H 0.147 0.853 34 H 0.147 0.853 35 H 0.140 0.860 36 H 0.092 0.908 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.677 -19.130 -2.281 22.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.146 4.146 3 Si 0.741 3.259 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.490 4.490 8 H 0.095 0.905 9 C 0.099 3.901 10 C -0.225 4.225 11 C -0.103 4.103 12 C -0.093 4.093 13 N -0.282 5.282 14 C 0.320 3.680 15 O -0.385 6.385 16 C -0.087 4.087 17 C -0.097 4.097 18 C -0.122 4.122 19 C -0.104 4.104 20 C -0.040 4.040 21 N -0.307 5.307 22 H 0.286 0.714 23 C 0.389 3.611 24 O -0.366 6.366 25 O -0.112 6.112 26 C 0.045 3.955 27 C -0.138 4.138 28 C -0.162 4.162 29 H 0.089 0.911 30 H 0.115 0.885 31 H 0.126 0.874 32 H 0.230 0.770 33 H 0.165 0.835 34 H 0.165 0.835 35 H 0.158 0.842 36 H 0.110 0.890 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.810 -18.491 -0.904 20.952 hybrid contribution -0.290 0.122 0.049 0.319 sum -10.100 -18.368 -0.856 20.980 Atomic orbital electron populations 1.69759 1.07297 1.28764 1.37907 1.25891 0.94959 1.01214 0.92529 0.86186 0.80277 0.80423 0.79043 1.19505 1.20287 1.18695 1.19519 0.94792 0.90218 1.44429 0.90548 1.17743 0.92273 0.91990 0.88087 1.20814 1.01312 0.94880 1.05497 1.20421 0.92720 0.97915 0.99195 1.17217 0.94324 0.85612 1.12183 1.42815 1.48558 1.21253 1.15605 1.17940 0.83407 0.83522 0.83129 1.90864 1.38065 1.69985 1.39554 1.19224 1.01239 0.96582 0.91655 1.21246 0.94216 0.96843 0.97426 1.20943 0.99610 0.94355 0.97338 1.20242 0.97873 1.01142 0.91136 1.18410 1.01533 0.95179 0.88889 1.43634 1.43156 1.28173 1.15736 0.71372 1.18706 0.79616 0.78393 0.84431 1.91191 1.57213 1.73152 1.15070 1.85229 1.57710 1.43618 1.24676 1.18748 0.93918 0.95166 0.87711 1.20299 0.98309 0.93045 1.02098 1.21192 0.97311 0.95551 1.02173 0.91102 0.88501 0.87400 0.77022 0.83517 0.83537 0.84175 0.88976 0.84969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.89 10.60 55.55 0.59 -20.30 16 2 C 0.07 1.74 5.42 -17.33 -0.09 1.65 16 3 Si 0.92 18.94 29.56 -169.99 -5.03 13.92 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 6 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.46 -12.18 9.02 -37.86 -0.34 -12.52 16 8 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 9 C 0.10 2.70 5.55 -106.80 -0.59 2.11 16 10 C -0.20 -5.20 9.74 -39.26 -0.38 -5.58 16 11 C -0.08 -1.98 8.61 -39.78 -0.34 -2.32 16 12 C 0.00 -0.03 6.30 -83.60 -0.53 -0.55 16 13 N -0.64 -10.72 5.25 -10.68 -0.06 -10.77 16 14 C 0.53 9.43 7.59 -12.47 -0.09 9.34 16 15 O -0.51 -11.46 13.50 -6.06 -0.08 -11.54 16 16 C -0.08 -1.07 5.88 -104.91 -0.62 -1.69 16 17 C -0.08 -0.62 9.53 -39.15 -0.37 -1.00 16 18 C -0.10 -0.56 10.02 -39.63 -0.40 -0.96 16 19 C -0.08 -0.48 10.06 -39.40 -0.40 -0.88 16 20 C 0.06 0.55 7.25 -83.81 -0.61 -0.06 16 21 N -0.65 -5.85 6.23 -14.39 -0.09 -5.94 16 22 H 0.44 2.27 8.96 -40.82 -0.37 1.91 16 23 C 0.63 8.95 9.44 54.06 0.51 9.46 16 24 O -0.48 -8.16 18.05 -18.99 -0.34 -8.50 16 25 O -0.21 -3.44 10.03 -26.09 -0.26 -3.70 16 26 C 0.09 1.26 6.94 -38.49 -0.27 0.99 16 27 C -0.12 -2.59 9.90 -39.78 -0.39 -2.98 16 28 C -0.14 -3.59 8.62 -39.26 -0.34 -3.93 16 29 H 0.28 6.56 8.30 -40.82 -0.34 6.23 16 30 H 0.10 2.35 8.06 -52.49 -0.42 1.92 16 31 H 0.11 2.58 6.22 -52.48 -0.33 2.26 16 32 H 0.39 4.79 6.85 -40.82 -0.28 4.51 16 33 H 0.15 0.82 6.41 -52.49 -0.34 0.48 16 34 H 0.15 0.31 8.06 -52.49 -0.42 -0.11 16 35 H 0.14 0.35 8.06 -52.49 -0.42 -0.08 16 36 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 37 H 0.13 3.43 6.13 -52.49 -0.32 3.11 16 LS Contribution 327.36 15.07 4.93 4.93 Total: -1.00 -34.62 327.36 -8.46 -43.08 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -2.87 Total: 7.75 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: -5.25 Total: -8.91 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.44 Total: -37.01 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.69 Total: -23.75 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.62 -8.46 -43.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151962579.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.217 kcal (2) G-P(sol) polarization free energy of solvation -34.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds