Wall clock time and date at job start Tue Mar 31 2020 14:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30873 * 1 3 3 Si 1.86796 * 120.00185 * 2 1 4 4 H 1.48499 * 109.47607 * 270.00183 * 3 2 1 5 5 H 1.48500 * 109.46900 * 30.00751 * 3 2 1 6 6 H 1.48506 * 109.47086 * 150.00154 * 3 2 1 7 7 C 1.39909 * 119.99766 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99765 * 175.58463 * 7 2 1 9 9 C 1.41141 * 120.00048 * 355.57760 * 7 2 1 10 10 C 1.40877 * 120.15884 * 214.77441 * 9 7 2 11 11 C 1.36362 * 119.82528 * 180.02562 * 10 9 7 12 12 C 1.39507 * 120.17161 * 0.02562 * 11 10 9 13 13 N 1.39123 * 119.84182 * 179.97438 * 12 11 10 14 14 C 1.34787 * 119.99619 * 35.31703 * 13 12 11 15 15 O 1.21592 * 119.99774 * 355.71802 * 14 13 12 16 16 C 1.47531 * 119.99719 * 175.70808 * 14 13 12 17 17 C 1.39703 * 120.21112 * 0.02562 * 16 14 13 18 18 C 1.37929 * 120.14150 * 180.27453 * 17 16 14 19 19 C 1.38413 * 120.38730 * 359.51425 * 18 17 16 20 20 C 1.38551 * 120.16474 * 0.45331 * 19 18 17 21 21 N 1.39514 * 133.31078 * 179.76639 * 20 19 18 22 22 H 0.97001 * 126.27129 * 0.02562 * 21 20 19 23 23 C 1.34784 * 107.45756 * 180.02562 * 21 20 19 24 24 O 1.21585 * 125.29703 * 179.97438 * 23 21 20 25 25 O 1.34272 * 109.41382 * 359.97438 * 23 21 20 26 26 C 1.35307 * 109.20674 * 0.02562 * 25 23 21 27 27 C 1.39513 * 120.32707 * 0.27318 * 12 11 10 28 28 C 1.36369 * 120.16397 * 359.44073 * 27 12 11 29 29 H 0.97003 * 119.99520 * 359.97438 * 1 2 3 30 30 H 1.07992 * 120.08992 * 0.02562 * 10 9 7 31 31 H 1.08003 * 119.91721 * 179.97438 * 11 10 9 32 32 H 0.97001 * 120.00766 * 215.31843 * 13 12 11 33 33 H 1.07994 * 119.92993 * 359.97438 * 17 16 14 34 34 H 1.08000 * 119.80913 * 179.72206 * 18 17 16 35 35 H 1.08001 * 119.91316 * 180.28360 * 19 18 17 36 36 H 1.07995 * 119.92117 * 179.70962 * 27 12 11 37 37 H 1.07996 * 120.08646 * 180.27739 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4903 2.0465 -1.4000 5 1 1.4403 2.6525 0.7002 6 1 3.5404 1.4400 0.7000 7 6 2.0082 -1.2117 -0.0005 8 1 3.0858 -1.2130 -0.0725 9 6 1.3056 -2.4322 0.0932 10 6 1.8649 -3.5188 0.7940 11 6 1.1804 -4.6950 0.8798 12 6 -0.0703 -4.8241 0.2754 13 7 -0.7624 -6.0275 0.3668 14 6 -0.6814 -6.7679 1.4902 15 8 0.0571 -6.4240 2.3930 16 6 -1.4888 -7.9953 1.6246 17 6 -2.3383 -8.3946 0.5899 18 6 -3.0968 -9.5394 0.7194 19 6 -3.0159 -10.3066 1.8685 20 6 -2.1776 -9.9244 2.9033 21 7 -1.8900 -10.4718 4.1539 22 1 -2.2697 -11.2830 4.5263 23 6 -0.9878 -9.6671 4.7498 24 8 -0.5123 -9.8419 5.8550 25 8 -0.6957 -8.6422 3.9329 26 6 -1.4082 -8.7673 2.7895 27 6 -0.6277 -3.7545 -0.4256 28 6 0.0424 -2.5701 -0.5150 29 1 -0.4849 0.8401 0.0004 30 1 2.8331 -3.4205 1.2621 31 1 1.6079 -5.5291 1.4164 32 1 -1.3034 -6.3338 -0.3778 33 1 -2.4050 -7.8031 -0.3111 34 1 -3.7552 -9.8406 -0.0820 35 1 -3.6098 -11.2041 1.9598 36 1 -1.5943 -3.8631 -0.8950 37 1 -0.3923 -1.7415 -1.0542 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000151962579.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:16 Heat of formation + Delta-G solvation = -44.611713 kcal Electronic energy + Delta-G solvation = -25519.774232 eV Core-core repulsion = 21613.369292 eV Total energy + Delta-G solvation = -3906.404940 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.48677 -41.41671 -39.73468 -38.95993 -38.52009 -36.40520 -36.23188 -34.76769 -32.28735 -31.48227 -30.74581 -30.30896 -27.11599 -25.22213 -24.79212 -23.99522 -23.40371 -22.69193 -21.55536 -19.91501 -19.63107 -19.22361 -18.59207 -18.23227 -17.96138 -17.06635 -16.98208 -16.74784 -16.25456 -15.83336 -15.70312 -15.42962 -15.03479 -14.93686 -14.50821 -14.45904 -14.01598 -13.87783 -13.61759 -13.41670 -13.21922 -12.94519 -12.87936 -12.77559 -12.48204 -12.31616 -12.21925 -11.80906 -11.40799 -11.24119 -10.90467 -10.65733 -9.97934 -9.47690 -9.43516 -8.74595 -8.51565 -6.33945 -0.52098 0.02784 0.81080 1.10999 1.12228 1.15516 1.39566 1.46487 1.53802 1.77506 1.83104 2.13170 2.24303 2.58971 2.80913 3.18328 3.61608 3.68030 3.70142 3.91711 4.12574 4.18633 4.38630 4.48090 4.56854 4.77932 4.92497 5.10004 5.11192 5.14166 5.23211 5.31493 5.38046 5.41479 5.49583 5.68902 5.88783 5.95213 6.00647 6.12406 6.38309 6.53192 6.63226 6.67584 6.95786 6.98211 7.29966 8.41188 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.024064 B = 0.002618 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.293813 B =10692.928555 C =11514.091521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.029 3.971 3 Si 0.988 3.012 4 H -0.257 1.257 5 H -0.269 1.269 6 H -0.266 1.266 7 C -0.498 4.498 8 H 0.071 0.929 9 C 0.070 3.930 10 C -0.224 4.224 11 C -0.098 4.098 12 C 0.018 3.982 13 N -0.628 5.628 14 C 0.532 3.468 15 O -0.570 6.570 16 C -0.114 4.114 17 C -0.060 4.060 18 C -0.082 4.082 19 C -0.050 4.050 20 C 0.058 3.942 21 N -0.618 5.618 22 H 0.462 0.538 23 C 0.626 3.374 24 O -0.529 6.529 25 O -0.252 6.252 26 C 0.048 3.952 27 C -0.111 4.111 28 C -0.159 4.159 29 H 0.286 0.714 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.421 0.579 33 H 0.175 0.825 34 H 0.201 0.799 35 H 0.191 0.809 36 H 0.134 0.866 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.419 -21.642 -4.714 26.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.183 4.183 3 Si 0.809 3.191 4 H -0.181 1.181 5 H -0.194 1.194 6 H -0.190 1.190 7 C -0.528 4.528 8 H 0.089 0.911 9 C 0.067 3.933 10 C -0.244 4.244 11 C -0.118 4.118 12 C -0.076 4.076 13 N -0.274 5.274 14 C 0.322 3.678 15 O -0.450 6.450 16 C -0.119 4.119 17 C -0.079 4.079 18 C -0.101 4.101 19 C -0.070 4.070 20 C -0.040 4.040 21 N -0.278 5.278 22 H 0.309 0.691 23 C 0.380 3.620 24 O -0.415 6.415 25 O -0.157 6.157 26 C 0.000 4.000 27 C -0.131 4.131 28 C -0.179 4.179 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.119 0.881 32 H 0.261 0.739 33 H 0.192 0.808 34 H 0.218 0.782 35 H 0.208 0.792 36 H 0.152 0.848 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -13.625 -21.073 -3.408 25.325 hybrid contribution 0.698 0.645 0.726 1.196 sum -12.926 -20.428 -2.682 24.323 Atomic orbital electron populations 1.69809 1.08474 1.30025 1.38293 1.26718 0.95853 1.04209 0.91558 0.85113 0.78588 0.75853 0.79571 1.18136 1.19362 1.18999 1.19723 0.94815 0.91408 1.46893 0.91107 1.18041 0.93528 0.92472 0.89226 1.20902 1.01602 0.95637 1.06242 1.20509 0.94098 0.97306 0.99928 1.17264 0.93334 0.87367 1.09607 1.42637 1.48342 1.19616 1.16779 1.18768 0.82585 0.84463 0.81997 1.90836 1.40773 1.71788 1.41602 1.18996 1.03584 0.95466 0.93812 1.21691 0.92136 0.97730 0.96357 1.21594 0.98257 0.92134 0.98068 1.20971 0.95177 1.01816 0.89056 1.18690 1.01945 0.93886 0.89497 1.43339 1.41326 1.27744 1.15384 0.69060 1.18835 0.80385 0.78657 0.84107 1.91132 1.59173 1.74309 1.16919 1.85127 1.59160 1.44980 1.26416 1.19260 0.95673 0.97723 0.87354 1.20586 0.99447 0.91666 1.01379 1.21206 0.97304 0.96631 1.02722 0.90376 0.89061 0.88144 0.73910 0.80755 0.78232 0.79176 0.84775 0.85947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.19 10.60 21.82 0.23 -43.96 16 2 C 0.03 1.49 5.42 85.24 0.46 1.95 16 3 Si 0.99 39.56 29.56 68.60 2.03 41.59 16 4 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 5 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 6 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 7 C -0.50 -27.76 9.02 23.39 0.21 -27.55 16 8 H 0.07 3.84 7.85 -2.91 -0.02 3.82 16 9 C 0.07 3.90 5.55 -21.27 -0.12 3.78 16 10 C -0.22 -12.09 9.74 22.48 0.22 -11.88 16 11 C -0.10 -4.95 8.61 22.14 0.19 -4.76 16 12 C 0.02 0.77 6.30 38.60 0.24 1.02 16 13 N -0.63 -20.29 5.25 -305.96 -1.61 -21.90 16 14 C 0.53 19.00 7.59 86.69 0.66 19.66 16 15 O -0.57 -27.29 13.50 6.84 0.09 -27.20 16 16 C -0.11 -2.79 5.88 -20.05 -0.12 -2.91 16 17 C -0.06 -0.66 9.53 22.55 0.21 -0.44 16 18 C -0.08 -0.27 10.02 22.24 0.22 -0.05 16 19 C -0.05 -0.24 10.06 22.39 0.23 -0.02 16 20 C 0.06 0.90 7.25 38.28 0.28 1.18 16 21 N -0.62 -10.18 6.23 -430.01 -2.68 -12.86 16 22 H 0.46 3.56 8.96 -92.71 -0.83 2.73 16 23 C 0.63 18.48 9.44 129.79 1.23 19.71 16 24 O -0.53 -19.08 18.05 19.23 0.35 -18.74 16 25 O -0.25 -8.90 10.03 15.37 0.15 -8.74 16 26 C 0.05 1.27 6.94 22.98 0.16 1.43 16 27 C -0.11 -4.81 9.90 22.14 0.22 -4.59 16 28 C -0.16 -8.19 8.62 22.48 0.19 -8.00 16 29 H 0.29 13.63 8.30 -92.71 -0.77 12.86 16 30 H 0.09 4.82 8.06 -2.91 -0.02 4.80 16 31 H 0.10 5.16 6.22 -2.91 -0.02 5.14 16 32 H 0.42 8.80 6.85 -92.71 -0.64 8.17 16 33 H 0.18 0.87 6.41 -2.91 -0.02 0.85 16 34 H 0.20 -1.19 8.06 -2.91 -0.02 -1.21 16 35 H 0.19 -0.80 8.06 -2.91 -0.02 -0.83 16 36 H 0.13 4.62 8.06 -2.91 -0.02 4.60 16 37 H 0.12 6.52 6.13 -2.91 -0.02 6.50 16 Total: -1.00 -87.12 327.36 2.77 -84.35 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -0.29 Total: 18.92 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: 4.49 Total: -11.47 kcal Atomic # 7 Polarization: -74.66 SS G_CDS: -4.05 Total: -78.71 kcal Atomic # 8 Polarization: -55.27 SS G_CDS: 0.59 Total: -54.68 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 2.03 Total: 41.59 kcal Total: -87.12 2.77 -84.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151962579.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.737 kcal (2) G-P(sol) polarization free energy of solvation -87.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds