Wall clock time and date at job start Tue Mar 31 2020 13:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50707 * 120.00100 * 2 1 4 4 O 1.45203 * 109.47179 * 134.99728 * 3 2 1 5 5 C 1.34704 * 116.99990 * 180.02562 * 4 3 2 6 6 O 1.21468 * 120.00334 * 359.97438 * 5 4 3 7 7 C 1.47732 * 119.99937 * 180.02562 * 5 4 3 8 8 C 1.39627 * 120.14880 * 180.02562 * 7 5 4 9 9 C 1.37943 * 119.84830 * 180.02562 * 8 7 5 10 10 C 1.38369 * 120.14997 * 0.02648 * 9 8 7 11 11 S 1.76193 * 119.84954 * 179.97438 * 10 9 8 12 12 O 1.42105 * 104.27847 * 206.06934 * 11 10 9 13 13 O 1.42101 * 104.27778 * 333.92604 * 11 10 9 14 14 C 1.81397 * 104.44909 * 89.99767 * 11 10 9 15 15 C 1.53009 * 109.47235 * 179.97438 * 14 11 10 16 16 C 1.50697 * 109.46948 * 179.97438 * 15 14 11 17 17 H 1.07997 * 120.00322 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99943 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99809 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00266 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.46833 * 90.00160 * 20 18 16 22 22 H 1.48496 * 109.47064 * 210.00215 * 20 18 16 23 23 H 1.48500 * 109.47150 * 330.00047 * 20 18 16 24 24 C 1.38371 * 120.30025 * 0.22749 * 10 9 8 25 25 C 1.37943 * 120.15066 * 359.48853 * 24 10 9 26 26 H 1.07999 * 120.00322 * 0.02562 * 1 2 3 27 27 H 1.08002 * 119.99942 * 179.97438 * 1 2 3 28 28 H 1.07998 * 120.00117 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.46685 * 15.00342 * 3 2 1 30 30 H 1.08994 * 109.47260 * 255.00223 * 3 2 1 31 31 H 1.08002 * 120.07893 * 359.97438 * 8 7 5 32 32 H 1.07999 * 119.92899 * 179.97438 * 9 8 7 33 33 H 1.09004 * 109.47032 * 299.99903 * 14 11 10 34 34 H 1.09000 * 109.47124 * 60.00175 * 14 11 10 35 35 H 1.08995 * 109.47216 * 300.00010 * 15 14 11 36 36 H 1.09000 * 109.46805 * 60.00123 * 15 14 11 37 37 H 0.97001 * 119.99986 * 179.97438 * 19 18 16 38 38 H 1.08001 * 119.92476 * 179.72803 * 24 10 9 39 39 H 1.08001 * 120.07890 * 180.25515 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1438 1.2403 0.9681 5 6 3.9193 2.3346 1.0932 6 8 3.6994 3.3160 0.4121 7 6 5.0379 2.3408 2.0582 8 6 5.8433 3.4736 2.1909 9 6 6.8865 3.4724 3.0935 10 6 7.1358 2.3518 3.8660 11 16 8.4707 2.3587 5.0159 12 8 8.8257 0.9891 5.1490 13 8 9.3874 3.3047 4.4830 14 6 7.7388 2.9790 6.5554 15 6 8.8115 3.0316 7.6452 16 6 8.2035 3.5475 8.9239 17 1 7.1567 3.8112 8.9563 18 6 8.9835 3.6820 10.0529 19 7 10.2582 3.3604 10.0137 20 14 8.2298 4.3209 11.6382 21 1 7.7113 3.1799 12.4347 22 1 9.2641 5.0424 12.4224 23 1 7.1151 5.2482 11.3178 24 6 6.3447 1.2240 3.7358 25 6 5.2947 1.2137 2.8413 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8499 -0.9353 -0.0004 29 1 1.3855 2.1161 0.2660 30 1 2.4755 1.4868 -0.9926 31 1 5.6506 4.3485 1.5877 32 1 7.5105 4.3477 3.1969 33 1 7.3388 3.9795 6.3902 34 1 6.9347 2.3135 6.8694 35 1 9.2111 2.0310 7.8103 36 1 9.6159 3.6968 7.3314 37 1 10.8070 3.4554 10.8078 38 1 6.5475 0.3512 4.3387 39 1 4.6755 0.3342 2.7436 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154689073.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:54 Heat of formation + Delta-G solvation = -113.284518 kcal Electronic energy + Delta-G solvation = -23696.112080 eV Core-core repulsion = 19889.880465 eV Total energy + Delta-G solvation = -3806.231616 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.98687 -39.10350 -37.08662 -36.69986 -35.53502 -34.52885 -33.95795 -32.00449 -31.37270 -31.22696 -27.48810 -25.70659 -24.76705 -23.07362 -21.79087 -21.29453 -20.59237 -18.84569 -18.41595 -17.80234 -17.31838 -16.89043 -16.47970 -15.87821 -15.50701 -15.36635 -14.91784 -14.83127 -14.58646 -14.31871 -13.83647 -13.57111 -13.50738 -13.46060 -13.02758 -12.90202 -12.54127 -11.82488 -11.76349 -11.67314 -11.66233 -11.44873 -11.34954 -11.11596 -11.09178 -11.01770 -10.71917 -10.44913 -10.42068 -10.04398 -9.85896 -9.64479 -9.35112 -9.19288 -8.53830 -6.16202 -4.22146 -0.03137 0.49486 1.01507 1.43155 2.01923 2.36030 3.19015 3.24420 3.30970 3.31704 3.33840 4.10504 4.21519 4.29208 4.35322 4.37752 4.49936 4.60189 4.62616 4.80975 4.93680 5.02323 5.10115 5.19333 5.26375 5.28508 5.57373 5.61426 5.66334 5.67301 5.81454 5.90830 5.95249 5.97168 6.05889 6.38068 6.43910 7.24619 7.28518 7.29840 7.76621 8.11632 8.81202 9.42899 10.94619 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.018624 B = 0.002423 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.102760 B =11554.543467 C =12210.218307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.160 4.160 3 C 0.095 3.905 4 O -0.347 6.347 5 C 0.510 3.490 6 O -0.500 6.500 7 C -0.086 4.086 8 C -0.077 4.077 9 C -0.036 4.036 10 C -0.622 4.622 11 S 2.470 3.530 12 O -0.941 6.941 13 O -0.941 6.941 14 C -0.562 4.562 15 C 0.026 3.974 16 C -0.521 4.521 17 H 0.063 0.937 18 C 0.058 3.942 19 N -0.889 5.889 20 Si 0.901 3.099 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.273 1.273 24 C -0.038 4.038 25 C -0.084 4.084 26 H 0.100 0.900 27 H 0.110 0.890 28 H 0.123 0.877 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.146 0.854 32 H 0.154 0.846 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.266 0.734 38 H 0.153 0.847 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.348 -5.109 -18.584 25.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.178 4.178 3 C 0.022 3.978 4 O -0.264 6.264 5 C 0.355 3.645 6 O -0.388 6.388 7 C -0.087 4.087 8 C -0.096 4.096 9 C -0.054 4.054 10 C -0.705 4.705 11 S 2.651 3.349 12 O -0.938 6.938 13 O -0.938 6.938 14 C -0.695 4.695 15 C -0.013 4.013 16 C -0.561 4.561 17 H 0.081 0.919 18 C -0.145 4.145 19 N -0.527 5.527 20 Si 0.728 3.272 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.197 1.197 24 C -0.056 4.056 25 C -0.103 4.103 26 H 0.119 0.881 27 H 0.128 0.872 28 H 0.140 0.860 29 H 0.096 0.904 30 H 0.101 0.899 31 H 0.164 0.836 32 H 0.172 0.828 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.075 0.925 38 H 0.171 0.829 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -15.469 -5.110 -18.980 25.012 hybrid contribution -1.372 0.570 0.648 1.620 sum -16.841 -4.541 -18.332 25.304 Atomic orbital electron populations 1.23933 0.95393 1.02784 0.98246 1.22674 0.95704 0.97631 1.01802 1.22122 0.86855 0.97104 0.91762 1.86561 1.41745 1.40010 1.58054 1.21196 0.81339 0.80636 0.81355 1.90850 1.69723 1.34441 1.43829 1.19357 0.95183 0.96668 0.97489 1.21384 0.93416 0.97304 0.97450 1.21014 0.95039 0.97157 0.92214 1.31473 1.20839 1.00524 1.17681 1.06596 0.75359 0.75517 0.77379 1.93536 1.80969 1.32753 1.86568 1.93537 1.58807 1.63541 1.77934 1.30195 1.12671 1.11604 1.15049 1.19049 0.91477 0.99381 0.91398 1.20977 0.96282 1.44757 0.94068 0.91916 1.25066 0.94885 0.95255 0.99255 1.69951 1.05597 1.47379 1.29757 0.86454 0.78907 0.79009 0.82828 1.20446 1.21002 1.19749 1.21053 0.91729 0.96815 0.96049 1.21584 0.97010 0.97579 0.94137 0.88126 0.87184 0.85954 0.90379 0.89940 0.83623 0.82828 0.85613 0.85616 0.94501 0.94498 0.92465 0.82944 0.83574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.80 14.31 29.02 0.42 -0.39 16 2 C -0.16 -0.97 9.90 -36.02 -0.36 -1.33 16 3 C 0.09 0.73 5.89 36.01 0.21 0.94 16 4 O -0.35 -3.42 9.46 -40.50 -0.38 -3.81 16 5 C 0.51 5.86 7.90 34.61 0.27 6.14 16 6 O -0.50 -6.67 16.14 -19.24 -0.31 -6.98 16 7 C -0.09 -0.98 5.87 -104.98 -0.62 -1.60 16 8 C -0.08 -0.88 9.60 -39.17 -0.38 -1.25 16 9 C -0.04 -0.44 9.45 -39.64 -0.37 -0.81 16 10 C -0.62 -8.36 5.66 -39.48 -0.22 -8.58 16 11 S 2.47 40.98 5.15 -107.50 -0.55 40.42 16 12 O -0.94 -17.89 17.10 -57.54 -0.98 -18.87 16 13 O -0.94 -18.00 17.11 -57.54 -0.98 -18.99 16 14 C -0.56 -9.85 5.92 37.16 0.22 -9.63 16 15 C 0.03 0.62 4.98 -27.88 -0.14 0.48 16 16 C -0.52 -13.84 9.11 -34.44 -0.31 -14.16 16 17 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.89 -25.72 13.29 55.43 0.74 -24.98 16 20 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 C -0.04 -0.45 9.45 -39.64 -0.37 -0.83 16 25 C -0.08 -0.89 9.62 -39.17 -0.38 -1.27 16 26 H 0.10 0.42 7.90 -52.49 -0.41 0.01 16 27 H 0.11 0.38 8.06 -52.49 -0.42 -0.04 16 28 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 29 H 0.08 0.58 7.86 -51.93 -0.41 0.17 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.15 1.46 7.65 -52.49 -0.40 1.06 16 32 H 0.15 1.69 7.56 -52.49 -0.40 1.29 16 33 H 0.13 1.94 8.14 -51.92 -0.42 1.51 16 34 H 0.13 1.92 8.14 -51.92 -0.42 1.50 16 35 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.15 1.60 7.55 -52.49 -0.40 1.21 16 39 H 0.15 1.20 7.61 -52.49 -0.40 0.80 16 LS Contribution 361.22 15.07 5.44 5.44 Total: -1.00 -34.48 361.22 -9.10 -43.58 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -4.92 Total: -0.70 kcal Atomic # 6 Polarization: -28.66 SS G_CDS: -2.13 Total: -30.79 kcal Atomic # 7 Polarization: -25.72 SS G_CDS: 0.74 Total: -24.98 kcal Atomic # 8 Polarization: -45.98 SS G_CDS: -2.66 Total: -48.65 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 40.98 SS G_CDS: -0.55 Total: 40.42 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.48 -9.10 -43.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154689073.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.706 kcal (2) G-P(sol) polarization free energy of solvation -34.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds