Wall clock time and date at job start Tue Mar 31 2020 13:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50707 * 120.00100 * 2 1 4 4 O 1.45203 * 109.47179 * 134.99728 * 3 2 1 5 5 C 1.34704 * 116.99990 * 180.02562 * 4 3 2 6 6 O 1.21468 * 120.00334 * 359.97438 * 5 4 3 7 7 C 1.47732 * 119.99937 * 180.02562 * 5 4 3 8 8 C 1.39627 * 120.14880 * 180.02562 * 7 5 4 9 9 C 1.37943 * 119.84830 * 180.02562 * 8 7 5 10 10 C 1.38369 * 120.14997 * 0.02648 * 9 8 7 11 11 S 1.76193 * 119.84954 * 179.97438 * 10 9 8 12 12 O 1.42105 * 104.27847 * 206.06934 * 11 10 9 13 13 O 1.42101 * 104.27778 * 333.92604 * 11 10 9 14 14 C 1.81397 * 104.44909 * 89.99767 * 11 10 9 15 15 C 1.53009 * 109.47235 * 179.97438 * 14 11 10 16 16 C 1.50697 * 109.46948 * 179.97438 * 15 14 11 17 17 H 1.07997 * 120.00322 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99943 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99809 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00266 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.46833 * 90.00160 * 20 18 16 22 22 H 1.48496 * 109.47064 * 210.00215 * 20 18 16 23 23 H 1.48500 * 109.47150 * 330.00047 * 20 18 16 24 24 C 1.38371 * 120.30025 * 0.22749 * 10 9 8 25 25 C 1.37943 * 120.15066 * 359.48853 * 24 10 9 26 26 H 1.07999 * 120.00322 * 0.02562 * 1 2 3 27 27 H 1.08002 * 119.99942 * 179.97438 * 1 2 3 28 28 H 1.07998 * 120.00117 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.46685 * 15.00342 * 3 2 1 30 30 H 1.08994 * 109.47260 * 255.00223 * 3 2 1 31 31 H 1.08002 * 120.07893 * 359.97438 * 8 7 5 32 32 H 1.07999 * 119.92899 * 179.97438 * 9 8 7 33 33 H 1.09004 * 109.47032 * 299.99903 * 14 11 10 34 34 H 1.09000 * 109.47124 * 60.00175 * 14 11 10 35 35 H 1.08995 * 109.47216 * 300.00010 * 15 14 11 36 36 H 1.09000 * 109.46805 * 60.00123 * 15 14 11 37 37 H 0.97001 * 119.99986 * 179.97438 * 19 18 16 38 38 H 1.08001 * 119.92476 * 179.72803 * 24 10 9 39 39 H 1.08001 * 120.07890 * 180.25515 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1438 1.2403 0.9681 5 6 3.9193 2.3346 1.0932 6 8 3.6994 3.3160 0.4121 7 6 5.0379 2.3408 2.0582 8 6 5.8433 3.4736 2.1909 9 6 6.8865 3.4724 3.0935 10 6 7.1358 2.3518 3.8660 11 16 8.4707 2.3587 5.0159 12 8 8.8257 0.9891 5.1490 13 8 9.3874 3.3047 4.4830 14 6 7.7388 2.9790 6.5554 15 6 8.8115 3.0316 7.6452 16 6 8.2035 3.5475 8.9239 17 1 7.1567 3.8112 8.9563 18 6 8.9835 3.6820 10.0529 19 7 10.2582 3.3604 10.0137 20 14 8.2298 4.3209 11.6382 21 1 7.7113 3.1799 12.4347 22 1 9.2641 5.0424 12.4224 23 1 7.1151 5.2482 11.3178 24 6 6.3447 1.2240 3.7358 25 6 5.2947 1.2137 2.8413 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8499 -0.9353 -0.0004 29 1 1.3855 2.1161 0.2660 30 1 2.4755 1.4868 -0.9926 31 1 5.6506 4.3485 1.5877 32 1 7.5105 4.3477 3.1969 33 1 7.3388 3.9795 6.3902 34 1 6.9347 2.3135 6.8694 35 1 9.2111 2.0310 7.8103 36 1 9.6159 3.6968 7.3314 37 1 10.8070 3.4554 10.8078 38 1 6.5475 0.3512 4.3387 39 1 4.6755 0.3342 2.7436 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154689073.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:54 Heat of formation + Delta-G solvation = -134.916888 kcal Electronic energy + Delta-G solvation = -23697.050130 eV Core-core repulsion = 19889.880465 eV Total energy + Delta-G solvation = -3807.169666 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.83928 -40.00349 -38.14763 -37.89856 -36.98475 -35.86570 -35.03059 -33.12267 -32.92268 -32.28120 -28.13270 -27.56376 -25.70666 -23.97455 -23.49742 -22.27815 -21.04844 -20.08165 -19.38539 -19.01020 -18.47995 -17.99961 -17.64983 -17.08692 -16.92556 -16.49789 -16.22273 -15.91574 -15.73859 -15.08974 -15.05631 -14.69474 -14.48178 -14.41929 -14.09312 -13.83976 -13.73185 -13.68641 -13.15015 -13.07298 -12.90723 -12.76622 -12.42478 -12.28254 -12.20938 -12.13772 -12.07382 -12.01654 -11.80202 -11.61295 -11.08670 -10.62556 -10.61082 -10.46054 -10.24466 -8.23077 -6.36238 -1.06971 -0.78364 0.12042 0.92533 1.10483 1.44033 1.45103 1.56105 1.69170 1.97124 2.33650 2.41174 2.90793 3.10598 3.13331 3.37046 3.63199 3.75598 3.82598 4.00138 4.04884 4.05429 4.11286 4.23923 4.30309 4.42522 4.46036 4.77493 4.79517 4.80470 4.87978 4.91968 5.02253 5.17490 5.32381 5.33216 5.53225 5.58833 5.64479 5.72045 6.09061 6.44487 6.77652 7.33630 8.88897 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.018624 B = 0.002423 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.102760 B =11554.543467 C =12210.218307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.176 4.176 3 C 0.089 3.911 4 O -0.345 6.345 5 C 0.515 3.485 6 O -0.522 6.522 7 C -0.088 4.088 8 C -0.077 4.077 9 C -0.041 4.041 10 C -0.623 4.623 11 S 2.492 3.508 12 O -0.970 6.970 13 O -0.972 6.972 14 C -0.562 4.562 15 C 0.017 3.983 16 C -0.536 4.536 17 H 0.077 0.923 18 C -0.004 4.004 19 N -0.933 5.933 20 Si 0.972 3.028 21 H -0.271 1.271 22 H -0.285 1.285 23 H -0.259 1.259 24 C -0.042 4.042 25 C -0.073 4.073 26 H 0.106 0.894 27 H 0.126 0.874 28 H 0.128 0.872 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.159 0.841 32 H 0.163 0.837 33 H 0.149 0.851 34 H 0.151 0.849 35 H 0.012 0.988 36 H 0.011 0.989 37 H 0.267 0.733 38 H 0.166 0.834 39 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.299 -5.399 -19.195 27.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.194 4.194 3 C 0.017 3.983 4 O -0.262 6.262 5 C 0.360 3.640 6 O -0.413 6.413 7 C -0.090 4.090 8 C -0.095 4.095 9 C -0.060 4.060 10 C -0.710 4.710 11 S 2.678 3.322 12 O -0.967 6.967 13 O -0.970 6.970 14 C -0.694 4.694 15 C -0.022 4.022 16 C -0.575 4.575 17 H 0.095 0.905 18 C -0.202 4.202 19 N -0.572 5.572 20 Si 0.796 3.204 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.182 1.182 24 C -0.061 4.061 25 C -0.092 4.092 26 H 0.124 0.876 27 H 0.144 0.856 28 H 0.146 0.854 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.176 0.824 32 H 0.180 0.820 33 H 0.167 0.833 34 H 0.169 0.831 35 H 0.031 0.969 36 H 0.029 0.971 37 H 0.075 0.925 38 H 0.183 0.817 39 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -18.402 -5.409 -19.554 27.391 hybrid contribution -0.582 0.610 0.685 1.086 sum -18.984 -4.799 -18.869 27.193 Atomic orbital electron populations 1.24163 0.95049 1.03853 0.96107 1.22664 0.96089 0.96978 1.03710 1.22342 0.86384 0.98286 0.91321 1.86553 1.41991 1.39118 1.58490 1.21168 0.81295 0.80649 0.80904 1.90843 1.70369 1.35315 1.44723 1.19536 0.95083 0.96927 0.97416 1.21527 0.92924 0.97945 0.97147 1.21166 0.95462 0.97134 0.92227 1.30797 1.20390 1.02129 1.17723 1.05441 0.75555 0.74188 0.77052 1.93493 1.82137 1.34009 1.87083 1.93492 1.60907 1.64248 1.78318 1.30074 1.11291 1.14016 1.14013 1.18902 0.92807 0.97192 0.93302 1.21510 0.97035 1.43980 0.95024 0.90466 1.26081 0.95290 0.95610 1.03250 1.70096 1.07252 1.49064 1.30823 0.85343 0.78220 0.78649 0.78234 1.19658 1.21075 1.18242 1.21292 0.91668 0.96628 0.96496 1.21822 0.96422 0.98125 0.92823 0.87577 0.85615 0.85434 0.90229 0.89841 0.82358 0.81970 0.83287 0.83089 0.96942 0.97054 0.92458 0.81660 0.80890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 14.31 67.79 0.97 -0.14 16 2 C -0.18 -1.77 9.90 25.66 0.25 -1.52 16 3 C 0.09 1.23 5.89 71.24 0.42 1.64 16 4 O -0.35 -6.07 9.46 -56.13 -0.53 -6.60 16 5 C 0.51 10.80 7.90 70.33 0.56 11.36 16 6 O -0.52 -13.15 16.14 19.94 0.32 -12.83 16 7 C -0.09 -1.82 5.87 -20.10 -0.12 -1.94 16 8 C -0.08 -1.60 9.60 22.54 0.22 -1.39 16 9 C -0.04 -0.95 9.45 22.23 0.21 -0.74 16 10 C -0.62 -15.83 5.66 22.33 0.13 -15.70 16 11 S 2.49 82.79 5.15 -56.49 -0.29 82.50 16 12 O -0.97 -37.24 17.10 -127.65 -2.18 -39.42 16 13 O -0.97 -37.88 17.11 -127.65 -2.18 -40.06 16 14 C -0.56 -19.46 5.92 71.99 0.43 -19.03 16 15 C 0.02 0.82 4.98 29.85 0.15 0.97 16 16 C -0.54 -28.61 9.11 25.60 0.23 -28.37 16 17 H 0.08 3.78 7.74 -2.91 -0.02 3.76 16 18 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 19 N -0.93 -55.50 13.29 21.45 0.28 -55.22 16 20 Si 0.97 42.36 29.54 68.60 2.03 44.39 16 21 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 22 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 23 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 24 C -0.04 -0.91 9.45 22.23 0.21 -0.70 16 25 C -0.07 -1.34 9.62 22.53 0.22 -1.13 16 26 H 0.11 0.64 7.90 -2.91 -0.02 0.61 16 27 H 0.13 0.51 8.06 -2.91 -0.02 0.49 16 28 H 0.13 1.12 8.06 -2.91 -0.02 1.10 16 29 H 0.08 1.05 7.86 -2.39 -0.02 1.03 16 30 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.16 2.88 7.65 -2.91 -0.02 2.86 16 32 H 0.16 3.38 7.56 -2.91 -0.02 3.36 16 33 H 0.15 4.41 8.14 -2.39 -0.02 4.39 16 34 H 0.15 4.40 8.14 -2.39 -0.02 4.38 16 35 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 38 H 0.17 3.11 7.55 -2.91 -0.02 3.09 16 39 H 0.17 2.21 7.61 -2.91 -0.02 2.19 16 Total: -1.00 -75.04 361.22 2.83 -72.22 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 1.05 Total: 11.46 kcal Atomic # 6 Polarization: -60.76 SS G_CDS: 4.33 Total: -56.43 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: 0.28 Total: -55.22 kcal Atomic # 8 Polarization: -94.33 SS G_CDS: -4.58 Total: -98.91 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 16 Polarization: 82.79 SS G_CDS: -0.29 Total: 82.50 kcal Total: -75.04 2.83 -72.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154689073.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.700 kcal (2) G-P(sol) polarization free energy of solvation -75.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds