Wall clock time and date at job start Tue Mar 31 2020 13:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00298 * 2 1 4 4 H 1.48501 * 109.46755 * 269.99742 * 3 2 1 5 5 H 1.48495 * 109.46931 * 29.99756 * 3 2 1 6 6 H 1.48500 * 109.46738 * 149.99998 * 3 2 1 7 7 C 1.38687 * 119.99652 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00090 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99934 * 0.02562 * 7 2 1 10 10 C 1.76197 * 100.00148 * 179.97438 * 9 7 2 11 11 N 1.31682 * 126.39959 * 0.02683 * 10 9 7 12 12 N 1.28501 * 110.07982 * 179.97438 * 11 10 9 13 13 C 1.31534 * 109.98821 * 359.97438 * 12 11 10 14 14 C 1.47690 * 126.45563 * 179.97438 * 13 12 11 15 15 C 1.39631 * 119.75427 * 0.02562 * 14 13 12 16 16 C 1.38322 * 119.04855 * 179.97438 * 15 14 13 17 17 C 1.38850 * 118.53312 * 0.02562 * 16 15 14 18 18 C 1.38280 * 119.42032 * 359.97438 * 17 16 15 19 19 N 1.31730 * 120.92045 * 359.72849 * 18 17 16 20 20 N 1.36853 * 126.39976 * 179.70855 * 10 9 7 21 21 C 1.40126 * 127.18130 * 359.97131 * 20 10 9 22 22 C 1.38852 * 120.06175 * 244.74249 * 21 20 10 23 23 C 1.38121 * 119.92749 * 179.78862 * 22 21 20 24 24 C 1.38286 * 120.06365 * 0.48250 * 23 22 21 25 25 C 1.38277 * 120.14057 * 359.74938 * 24 23 22 26 26 C 1.38115 * 120.06465 * 0.02562 * 25 24 23 27 27 H 0.97005 * 119.99666 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.47490 * 0.02852 * 15 14 13 29 29 H 1.07996 * 120.72591 * 180.02562 * 16 15 14 30 30 H 1.08000 * 120.28357 * 180.02562 * 17 16 15 31 31 H 1.07994 * 119.54121 * 179.97438 * 18 17 16 32 32 H 1.07997 * 120.03668 * 359.97438 * 22 21 20 33 33 H 1.07993 * 119.96590 * 180.23093 * 23 22 21 34 34 H 1.08000 * 119.92574 * 179.72561 * 24 23 22 35 35 H 1.08003 * 119.96641 * 179.97438 * 25 24 23 36 36 H 1.08001 * 120.03446 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4400 0.7001 7 6 2.0096 -1.2011 0.0005 8 1 3.0896 -1.2012 0.0001 9 16 1.1285 -2.7270 0.0005 10 6 2.4781 -3.8597 0.0005 11 7 3.7580 -3.5501 0.0010 12 7 4.4705 -4.6195 0.0014 13 6 3.6911 -5.6791 0.0017 14 6 4.1281 -7.0899 0.0017 15 6 5.4910 -7.3932 0.0018 16 6 5.8839 -8.7195 0.0023 17 6 4.9027 -9.7019 0.0021 18 6 3.5705 -9.3313 0.0019 19 7 3.2212 -8.0612 0.0074 20 7 2.3920 -5.2255 0.0061 21 6 1.2246 -6.0004 0.0135 22 6 0.9328 -6.8081 1.1046 23 6 -0.2210 -7.5674 1.1109 24 6 -1.0799 -7.5315 0.0277 25 6 -0.7895 -6.7318 -1.0624 26 6 0.3603 -5.9666 -1.0725 27 1 -0.4850 0.8401 -0.0004 28 1 6.2279 -6.6037 0.0024 29 1 6.9308 -8.9849 0.0028 30 1 5.1777 -10.7463 0.0029 31 1 2.8057 -10.0938 0.0014 32 1 1.6056 -6.8402 1.9488 33 1 -0.4504 -8.1930 1.9608 34 1 -1.9791 -8.1295 0.0331 35 1 -1.4621 -6.7061 -1.9070 36 1 0.5864 -5.3419 -1.9240 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157171015.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:05 Heat of formation + Delta-G solvation = 142.771872 kcal Electronic energy + Delta-G solvation = -23661.101471 eV Core-core repulsion = 20237.867716 eV Total energy + Delta-G solvation = -3423.233755 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 324.074 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.23716 -39.91341 -38.90609 -34.39251 -32.71612 -32.61648 -32.24625 -30.84233 -29.40378 -29.06802 -25.78097 -24.34252 -23.75726 -23.03902 -22.56530 -21.33271 -20.60030 -18.57067 -17.64588 -16.81273 -16.22492 -16.01986 -15.85012 -15.64046 -15.18272 -14.96830 -14.43613 -14.12845 -13.93433 -13.75242 -13.33587 -13.25602 -13.01349 -12.62846 -11.94721 -11.84833 -11.36720 -11.23429 -11.16878 -11.11263 -10.76191 -10.32212 -10.25306 -10.16004 -9.96340 -9.88445 -9.61187 -9.31690 -8.91475 -8.78200 -8.60521 -8.40935 -6.81332 -6.50837 -4.25126 0.67447 1.19119 1.32580 1.53553 2.36121 2.37988 3.17751 3.19768 3.22848 3.31609 3.35001 3.84339 3.94618 3.96254 3.99190 4.63218 4.72627 4.93373 4.95081 4.98158 5.02613 5.03085 5.04300 5.18006 5.34119 5.49599 5.61468 5.64520 5.71418 5.90097 6.02164 6.06674 6.09919 6.22311 6.44514 6.46865 6.57065 6.57917 6.68554 6.91009 7.50719 7.53446 7.85924 8.33078 9.00746 9.25078 10.57022 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.014715 B = 0.004320 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.347702 B = 6479.498869 C = 8134.526812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.078 3.922 3 Si 0.933 3.067 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.540 4.540 8 H 0.106 0.894 9 S 0.163 5.837 10 C 0.182 3.818 11 N -0.300 5.300 12 N -0.253 5.253 13 C 0.174 3.826 14 C 0.219 3.781 15 C -0.135 4.135 16 C -0.073 4.073 17 C -0.179 4.179 18 C 0.106 3.894 19 N -0.471 5.471 20 N -0.424 5.424 21 C 0.145 3.855 22 C -0.071 4.071 23 C -0.114 4.114 24 C -0.113 4.113 25 C -0.111 4.111 26 C -0.098 4.098 27 H 0.275 0.725 28 H 0.147 0.853 29 H 0.138 0.862 30 H 0.134 0.866 31 H 0.157 0.843 32 H 0.117 0.883 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.128 0.872 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.610 -19.874 0.031 19.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.132 4.132 3 Si 0.758 3.242 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.689 4.689 8 H 0.124 0.876 9 S 0.397 5.603 10 C -0.186 4.186 11 N -0.147 5.147 12 N -0.097 5.097 13 C -0.091 4.091 14 C 0.081 3.919 15 C -0.158 4.158 16 C -0.099 4.099 17 C -0.200 4.200 18 C -0.053 4.053 19 N -0.182 5.182 20 N -0.117 5.117 21 C 0.054 3.946 22 C -0.091 4.091 23 C -0.132 4.132 24 C -0.131 4.131 25 C -0.129 4.129 26 C -0.117 4.117 27 H 0.085 0.915 28 H 0.164 0.836 29 H 0.155 0.845 30 H 0.152 0.848 31 H 0.174 0.826 32 H 0.135 0.865 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.146 0.854 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.600 -18.729 0.046 18.739 hybrid contribution 1.597 0.168 -0.019 1.606 sum 2.197 -18.562 0.027 18.691 Atomic orbital electron populations 1.69944 1.06107 1.28598 1.46342 1.25081 0.95178 0.99667 0.93279 0.85912 0.79650 0.79870 0.78779 1.19849 1.20614 1.18922 1.23291 0.97392 0.89285 1.58896 0.87566 1.83683 0.96999 0.94943 1.84643 1.28723 1.02344 0.85151 1.02414 1.74865 0.98747 1.17874 1.23235 1.74203 1.26500 0.94155 1.14802 1.22193 0.80678 0.93729 1.12530 1.18161 0.89571 0.87825 0.96373 1.22033 0.95930 0.97752 1.00050 1.21513 1.00266 0.92200 0.95933 1.22184 0.94317 1.00633 1.02820 1.22650 0.95039 0.92333 0.95271 1.67762 1.37635 1.00618 1.12180 1.43583 1.05213 1.05084 1.57814 1.17356 0.86319 0.95373 0.95598 1.20871 0.96604 0.95291 0.96288 1.20883 0.94107 0.99504 0.98731 1.21151 0.99313 0.98909 0.93729 1.20933 0.96428 0.96667 0.98901 1.21139 0.94545 0.98965 0.97078 0.91503 0.83558 0.84451 0.84812 0.82622 0.86454 0.85740 0.85883 0.85431 0.85487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.36 13.22 55.48 0.73 -23.62 16 2 C 0.08 2.11 5.49 -17.48 -0.10 2.01 16 3 Si 0.93 21.21 29.55 -169.99 -5.02 16.19 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.26 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.54 -15.16 9.37 30.90 0.29 -14.87 16 8 H 0.11 3.06 6.92 -52.49 -0.36 2.70 16 9 S 0.16 4.15 21.57 -107.50 -2.32 1.84 16 10 C 0.18 4.40 8.00 -87.71 -0.70 3.70 16 11 N -0.30 -7.64 11.03 30.81 0.34 -7.30 16 12 N -0.25 -5.77 11.86 32.60 0.39 -5.39 16 13 C 0.17 3.55 7.76 -153.58 -1.19 2.36 16 14 C 0.22 3.60 6.75 -83.03 -0.56 3.04 16 15 C -0.14 -1.83 9.74 -39.03 -0.38 -2.21 16 16 C -0.07 -0.73 10.16 -39.32 -0.40 -1.13 16 17 C -0.18 -1.61 10.11 -39.34 -0.40 -2.00 16 18 C 0.11 1.14 11.17 -17.58 -0.20 0.95 16 19 N -0.47 -6.92 7.55 -9.85 -0.07 -6.99 16 20 N -0.42 -8.88 2.86 -58.12 -0.17 -9.05 16 21 C 0.14 2.59 4.66 -83.61 -0.39 2.20 16 22 C -0.07 -1.10 8.30 -39.40 -0.33 -1.42 16 23 C -0.11 -1.40 10.04 -39.61 -0.40 -1.80 16 24 C -0.11 -1.30 10.04 -39.55 -0.40 -1.70 16 25 C -0.11 -1.44 10.04 -39.61 -0.40 -1.84 16 26 C -0.10 -1.60 9.92 -39.40 -0.39 -1.99 16 27 H 0.28 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.15 1.96 7.86 -52.49 -0.41 1.54 16 29 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 30 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 31 H 0.16 1.23 8.06 -52.49 -0.42 0.81 16 32 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 33 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 34 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 36 H 0.13 2.17 8.06 -52.49 -0.42 1.74 16 LS Contribution 338.06 15.07 5.09 5.09 Total: -1.00 -32.60 338.06 -10.25 -42.86 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -3.29 Total: 1.08 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: -5.93 Total: -14.70 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: 1.22 Total: -52.35 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 4.15 SS G_CDS: -2.32 Total: 1.84 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.60 -10.25 -42.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157171015.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.629 kcal (2) G-P(sol) polarization free energy of solvation -32.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds