Wall clock time and date at job start Tue Mar 31 2020 13:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00298 * 2 1 4 4 H 1.48501 * 109.46755 * 269.99742 * 3 2 1 5 5 H 1.48495 * 109.46931 * 29.99756 * 3 2 1 6 6 H 1.48500 * 109.46738 * 149.99998 * 3 2 1 7 7 C 1.38687 * 119.99652 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00090 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99934 * 0.02562 * 7 2 1 10 10 C 1.76197 * 100.00148 * 179.97438 * 9 7 2 11 11 N 1.31682 * 126.39959 * 0.02683 * 10 9 7 12 12 N 1.28501 * 110.07982 * 179.97438 * 11 10 9 13 13 C 1.31534 * 109.98821 * 359.97438 * 12 11 10 14 14 C 1.47690 * 126.45563 * 179.97438 * 13 12 11 15 15 C 1.39631 * 119.75427 * 0.02562 * 14 13 12 16 16 C 1.38322 * 119.04855 * 179.97438 * 15 14 13 17 17 C 1.38850 * 118.53312 * 0.02562 * 16 15 14 18 18 C 1.38280 * 119.42032 * 359.97438 * 17 16 15 19 19 N 1.31730 * 120.92045 * 359.72849 * 18 17 16 20 20 N 1.36853 * 126.39976 * 179.70855 * 10 9 7 21 21 C 1.40126 * 127.18130 * 359.97131 * 20 10 9 22 22 C 1.38852 * 120.06175 * 244.74249 * 21 20 10 23 23 C 1.38121 * 119.92749 * 179.78862 * 22 21 20 24 24 C 1.38286 * 120.06365 * 0.48250 * 23 22 21 25 25 C 1.38277 * 120.14057 * 359.74938 * 24 23 22 26 26 C 1.38115 * 120.06465 * 0.02562 * 25 24 23 27 27 H 0.97005 * 119.99666 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.47490 * 0.02852 * 15 14 13 29 29 H 1.07996 * 120.72591 * 180.02562 * 16 15 14 30 30 H 1.08000 * 120.28357 * 180.02562 * 17 16 15 31 31 H 1.07994 * 119.54121 * 179.97438 * 18 17 16 32 32 H 1.07997 * 120.03668 * 359.97438 * 22 21 20 33 33 H 1.07993 * 119.96590 * 180.23093 * 23 22 21 34 34 H 1.08000 * 119.92574 * 179.72561 * 24 23 22 35 35 H 1.08003 * 119.96641 * 179.97438 * 25 24 23 36 36 H 1.08001 * 120.03446 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4400 0.7001 7 6 2.0096 -1.2011 0.0005 8 1 3.0896 -1.2012 0.0001 9 16 1.1285 -2.7270 0.0005 10 6 2.4781 -3.8597 0.0005 11 7 3.7580 -3.5501 0.0010 12 7 4.4705 -4.6195 0.0014 13 6 3.6911 -5.6791 0.0017 14 6 4.1281 -7.0899 0.0017 15 6 5.4910 -7.3932 0.0018 16 6 5.8839 -8.7195 0.0023 17 6 4.9027 -9.7019 0.0021 18 6 3.5705 -9.3313 0.0019 19 7 3.2212 -8.0612 0.0074 20 7 2.3920 -5.2255 0.0061 21 6 1.2246 -6.0004 0.0135 22 6 0.9328 -6.8081 1.1046 23 6 -0.2210 -7.5674 1.1109 24 6 -1.0799 -7.5315 0.0277 25 6 -0.7895 -6.7318 -1.0624 26 6 0.3603 -5.9666 -1.0725 27 1 -0.4850 0.8401 -0.0004 28 1 6.2279 -6.6037 0.0024 29 1 6.9308 -8.9849 0.0028 30 1 5.1777 -10.7463 0.0029 31 1 2.8057 -10.0938 0.0014 32 1 1.6056 -6.8402 1.9488 33 1 -0.4504 -8.1930 1.9608 34 1 -1.9791 -8.1295 0.0331 35 1 -1.4621 -6.7061 -1.9070 36 1 0.5864 -5.3419 -1.9240 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157171015.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:05 Heat of formation + Delta-G solvation = 124.841402 kcal Electronic energy + Delta-G solvation = -23661.878995 eV Core-core repulsion = 20237.867716 eV Total energy + Delta-G solvation = -3424.011279 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 324.074 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.89422 -40.90822 -40.08053 -35.84861 -34.78065 -33.69297 -33.35044 -31.94739 -30.74404 -30.45341 -27.84938 -25.66589 -24.90285 -24.19615 -23.68111 -22.85420 -21.93687 -20.18217 -19.25682 -17.94013 -17.38723 -17.34292 -17.26873 -17.00254 -16.77468 -16.52253 -15.67109 -15.27766 -15.08656 -14.88639 -14.81222 -14.42676 -14.06236 -13.76542 -13.56524 -13.07601 -13.02094 -12.89556 -12.81831 -12.41630 -12.34929 -12.09396 -11.87127 -11.78864 -11.47910 -11.12820 -10.91827 -10.86781 -10.59922 -9.97435 -9.88250 -9.62203 -8.74454 -8.55902 -6.36152 -0.46522 0.16368 0.31945 0.43655 0.58586 0.88695 1.34656 1.38329 1.50885 1.63712 1.69688 2.10517 2.71182 2.76876 2.84762 2.88445 2.98915 3.60272 3.88829 3.93653 3.94441 4.07747 4.11750 4.21558 4.23388 4.42589 4.47939 4.49857 4.58819 4.70070 4.81142 4.85446 5.03369 5.15589 5.22205 5.39800 5.42452 5.45855 5.51943 5.68814 5.79571 6.12794 6.17256 6.87805 6.90903 7.50999 8.53638 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.014715 B = 0.004320 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.347702 B = 6479.498869 C = 8134.526812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.036 3.964 3 Si 0.997 3.003 4 H -0.264 1.264 5 H -0.262 1.262 6 H -0.271 1.271 7 C -0.567 4.567 8 H 0.086 0.914 9 S 0.137 5.863 10 C 0.163 3.837 11 N -0.337 5.337 12 N -0.294 5.294 13 C 0.200 3.800 14 C 0.169 3.831 15 C -0.139 4.139 16 C -0.068 4.068 17 C -0.145 4.145 18 C 0.097 3.903 19 N -0.486 5.486 20 N -0.416 5.416 21 C 0.106 3.894 22 C -0.080 4.080 23 C -0.102 4.102 24 C -0.095 4.095 25 C -0.107 4.107 26 C -0.121 4.121 27 H 0.282 0.718 28 H 0.136 0.864 29 H 0.176 0.824 30 H 0.183 0.817 31 H 0.191 0.809 32 H 0.106 0.894 33 H 0.162 0.838 34 H 0.169 0.831 35 H 0.155 0.845 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.069 -24.266 0.336 24.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.171 4.171 3 Si 0.818 3.182 4 H -0.189 1.189 5 H -0.187 1.187 6 H -0.195 1.195 7 C -0.715 4.715 8 H 0.104 0.896 9 S 0.369 5.631 10 C -0.208 4.208 11 N -0.182 5.182 12 N -0.135 5.135 13 C -0.067 4.067 14 C 0.033 3.967 15 C -0.162 4.162 16 C -0.093 4.093 17 C -0.166 4.166 18 C -0.063 4.063 19 N -0.197 5.197 20 N -0.107 5.107 21 C 0.016 3.984 22 C -0.099 4.099 23 C -0.120 4.120 24 C -0.113 4.113 25 C -0.125 4.125 26 C -0.140 4.140 27 H 0.092 0.908 28 H 0.154 0.846 29 H 0.194 0.806 30 H 0.200 0.800 31 H 0.208 0.792 32 H 0.124 0.876 33 H 0.180 0.820 34 H 0.187 0.813 35 H 0.173 0.827 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.072 -23.160 0.349 23.162 hybrid contribution 1.824 1.005 -0.117 2.086 sum 1.895 -22.154 0.232 22.236 Atomic orbital electron populations 1.70003 1.07215 1.29792 1.46685 1.25948 0.96089 1.02637 0.92452 0.84978 0.78124 0.75887 0.79217 1.18864 1.18671 1.19549 1.23378 0.96801 0.91073 1.60286 0.89593 1.83300 0.98020 0.94566 1.87200 1.28391 1.01561 0.86587 1.04254 1.74714 0.99722 1.19816 1.23984 1.74104 1.26872 0.94374 1.18179 1.23155 0.80247 0.95464 1.07855 1.18055 0.91061 0.86228 1.01372 1.22130 0.94439 0.99684 0.99945 1.21972 1.02645 0.90381 0.94331 1.22755 0.93018 1.02708 0.98086 1.23368 0.97215 0.91315 0.94362 1.67663 1.37874 1.01839 1.12299 1.43812 1.06648 1.04171 1.56085 1.17765 0.86143 0.96903 0.97569 1.20907 0.97987 0.95887 0.95157 1.21318 0.92333 0.98314 1.00075 1.21662 1.00021 0.97538 0.92036 1.21309 0.95124 0.95564 1.00523 1.21168 0.96183 1.00302 0.96391 0.90816 0.84611 0.80627 0.79993 0.79237 0.87622 0.82032 0.81331 0.82696 0.87792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.85 13.22 21.63 0.29 -51.56 16 2 C 0.04 2.01 5.49 84.83 0.47 2.48 16 3 Si 1.00 44.89 29.55 68.60 2.03 46.92 16 4 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 5 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 6 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.57 -34.02 9.37 67.93 0.64 -33.39 16 8 H 0.09 5.37 6.92 -2.91 -0.02 5.35 16 9 S 0.14 7.53 21.57 -56.49 -1.22 6.32 16 10 C 0.16 8.60 8.00 179.33 1.43 10.03 16 11 N -0.34 -18.71 11.03 -56.45 -0.62 -19.33 16 12 N -0.29 -14.53 11.86 -50.76 -0.60 -15.13 16 13 C 0.20 8.72 7.76 136.08 1.06 9.78 16 14 C 0.17 5.66 6.75 41.82 0.28 5.95 16 15 C -0.14 -3.69 9.74 22.63 0.22 -3.47 16 16 C -0.07 -1.09 10.16 22.44 0.23 -0.86 16 17 C -0.15 -1.84 10.11 22.43 0.23 -1.61 16 18 C 0.10 1.71 11.17 84.72 0.95 2.66 16 19 N -0.49 -13.66 7.55 -185.09 -1.40 -15.06 16 20 N -0.42 -18.75 2.86 -337.79 -0.97 -19.71 16 21 C 0.11 3.95 4.66 38.11 0.18 4.13 16 22 C -0.08 -2.45 8.30 22.39 0.19 -2.26 16 23 C -0.10 -2.19 10.04 22.25 0.22 -1.97 16 24 C -0.09 -1.80 10.04 22.29 0.22 -1.58 16 25 C -0.11 -2.58 10.04 22.25 0.22 -2.36 16 26 C -0.12 -4.10 9.92 22.39 0.22 -3.88 16 27 H 0.28 14.89 8.31 -92.70 -0.77 14.12 16 28 H 0.14 3.79 7.86 -2.91 -0.02 3.76 16 29 H 0.18 1.50 8.06 -2.91 -0.02 1.48 16 30 H 0.18 0.67 8.06 -2.91 -0.02 0.65 16 31 H 0.19 1.98 8.06 -2.91 -0.02 1.96 16 32 H 0.11 3.42 8.06 -2.91 -0.02 3.39 16 33 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 34 H 0.17 1.77 8.06 -2.91 -0.02 1.75 16 35 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 36 H 0.10 3.89 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -80.46 338.06 5.38 -75.09 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: 1.12 Total: 8.83 kcal Atomic # 6 Polarization: -23.10 SS G_CDS: 6.75 Total: -16.35 kcal Atomic # 7 Polarization: -117.50 SS G_CDS: -3.30 Total: -120.80 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Atomic # 16 Polarization: 7.53 SS G_CDS: -1.22 Total: 6.32 kcal Total: -80.46 5.38 -75.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157171015.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.928 kcal (2) G-P(sol) polarization free energy of solvation -80.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds