Wall clock time and date at job start Tue Mar 31 2020 13:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.30892 * 121.69071 * 2 1 4 4 S 1.75723 * 109.69862 * 180.02562 * 3 2 1 5 5 C 1.76444 * 90.71812 * 0.02562 * 4 3 2 6 6 N 1.33053 * 129.52594 * 179.97438 * 5 4 3 7 7 C 1.32416 * 121.90968 * 180.02562 * 6 5 4 8 8 C 1.50702 * 120.25863 * 179.97438 * 7 6 5 9 9 S 1.81399 * 109.47410 * 285.00128 * 8 7 6 10 10 C 1.81405 * 102.99706 * 180.02562 * 9 8 7 11 11 C 1.53006 * 109.46817 * 180.02562 * 10 9 8 12 12 C 1.52998 * 109.47006 * 180.02562 * 11 10 9 13 13 C 1.50705 * 109.46943 * 179.97438 * 12 11 10 14 14 H 1.07997 * 119.99647 * 359.97438 * 13 12 11 15 15 C 1.37874 * 119.99670 * 180.02562 * 13 12 11 16 16 N 1.31508 * 120.00397 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99639 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47236 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.46905 * 119.99794 * 17 15 13 20 20 H 1.48496 * 109.47019 * 239.99324 * 17 15 13 21 21 C 1.37869 * 119.48241 * 0.27762 * 7 6 5 22 22 C 1.39669 * 118.81033 * 359.49742 * 21 7 6 23 23 O 1.22101 * 120.19747 * 180.24631 * 22 21 7 24 24 N 1.35375 * 109.14186 * 0.02562 * 5 4 3 25 25 H 1.08994 * 109.46979 * 269.97093 * 1 2 3 26 26 H 1.08996 * 109.47109 * 29.97851 * 1 2 3 27 27 H 1.09003 * 109.47006 * 149.97320 * 1 2 3 28 28 H 1.07997 * 125.14816 * 0.06325 * 3 2 1 29 29 H 1.09004 * 109.46923 * 165.00113 * 8 7 6 30 30 H 1.09004 * 109.46818 * 45.00664 * 8 7 6 31 31 H 1.09000 * 109.47133 * 299.99843 * 10 9 8 32 32 H 1.08998 * 109.47280 * 60.00592 * 10 9 8 33 33 H 1.09004 * 109.46853 * 300.00228 * 11 10 9 34 34 H 1.09007 * 109.47210 * 59.99627 * 11 10 9 35 35 H 1.09000 * 109.46945 * 299.99656 * 12 11 10 36 36 H 1.09002 * 109.47076 * 59.99822 * 12 11 10 37 37 H 0.97002 * 120.00183 * 180.02562 * 16 15 13 38 38 H 1.07998 * 120.59763 * 179.72163 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1947 1.1138 0.0000 4 16 3.9135 0.7486 -0.0007 5 6 3.5686 -0.9817 -0.0018 6 7 4.4095 -2.0128 -0.0032 7 6 3.9808 -3.2657 -0.0043 8 6 4.9666 -4.4056 -0.0065 9 16 5.6956 -4.5715 -1.6592 10 6 6.8341 -5.9703 -1.4643 11 6 7.5407 -6.2418 -2.7940 12 6 8.5005 -7.4219 -2.6299 13 6 9.1960 -7.6897 -3.9398 14 1 8.9751 -7.0795 -4.8030 15 6 10.1134 -8.7144 -4.0362 16 7 10.3819 -9.4578 -2.9852 17 14 10.9749 -9.0468 -5.6601 18 1 10.4999 -8.0776 -6.6800 19 1 12.4417 -8.8991 -5.4815 20 1 10.6677 -10.4283 -6.1097 21 6 2.6256 -3.5191 -0.0099 22 6 1.7390 -2.4399 -0.0035 23 8 0.5338 -2.6353 -0.0036 24 7 2.2276 -1.1671 -0.0021 25 1 -0.3633 -0.0005 1.0276 26 1 -0.3633 0.8901 -0.5135 27 1 -0.3633 -0.8898 -0.5143 28 1 1.7699 2.1067 0.0010 29 1 4.4535 -5.3301 0.2588 30 1 5.7544 -4.2060 0.7199 31 1 7.5753 -5.7320 -0.7015 32 1 6.2740 -6.8554 -1.1628 33 1 6.7997 -6.4799 -3.5572 34 1 8.1009 -5.3565 -3.0952 35 1 9.2415 -7.1842 -1.8666 36 1 7.9399 -8.3070 -2.3289 37 1 11.0276 -10.1785 -3.0530 38 1 2.2562 -4.5339 -0.0154 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161093923.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:54 Heat of formation + Delta-G solvation = 23.769006 kcal Electronic energy + Delta-G solvation = -21054.230345 eV Core-core repulsion = 17728.987439 eV Total energy + Delta-G solvation = -3325.242907 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.84180 -38.28539 -38.13243 -34.46788 -33.43632 -32.03393 -31.65674 -29.37792 -28.81293 -27.47248 -25.28481 -23.77060 -23.13885 -21.52976 -20.27367 -19.10320 -18.84885 -17.35894 -17.23880 -16.52161 -15.99352 -15.64071 -15.05271 -14.68994 -14.59867 -14.54667 -14.24731 -14.00525 -13.88192 -13.53294 -13.44628 -13.36157 -13.10112 -12.49622 -12.21255 -11.78834 -11.73542 -11.63137 -10.92947 -10.89921 -10.67593 -10.53807 -10.53085 -10.36426 -9.99478 -9.80570 -9.55738 -9.30926 -9.09522 -8.37566 -8.06307 -7.47651 -6.02336 -4.04689 -0.34429 0.11485 0.85779 0.93081 1.21128 1.75258 1.94989 2.75160 3.20063 3.31050 3.38555 3.43379 3.52216 3.75303 4.25392 4.36234 4.45297 4.57483 4.76567 4.88726 4.98972 5.03336 5.18913 5.26598 5.33796 5.48400 5.49840 5.54946 5.60562 5.81310 6.04368 6.10127 6.53713 6.69917 7.00427 7.14421 7.29287 7.62866 7.74584 7.96683 8.38461 9.01946 9.59650 11.08999 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.028156 B = 0.002018 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.213399 B =13871.735769 C =14311.712601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.098 3.902 3 C -0.248 4.248 4 S 0.219 5.781 5 C 0.302 3.698 6 N -0.497 5.497 7 C 0.237 3.763 8 C -0.051 4.051 9 S -0.243 6.243 10 C -0.075 4.075 11 C -0.095 4.095 12 C 0.028 3.972 13 C -0.520 4.520 14 H 0.057 0.943 15 C 0.056 3.944 16 N -0.896 5.896 17 Si 0.893 3.107 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.294 4.294 22 C 0.530 3.470 23 O -0.522 6.522 24 N -0.457 5.457 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.102 0.898 28 H 0.201 0.799 29 H 0.106 0.894 30 H 0.108 0.892 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.018 0.982 36 H 0.018 0.982 37 H 0.260 0.740 38 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.760 23.416 10.678 31.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.011 4.011 3 C -0.385 4.385 4 S 0.471 5.529 5 C -0.064 4.064 6 N -0.225 5.225 7 C 0.107 3.893 8 C -0.199 4.199 9 S -0.014 6.014 10 C -0.224 4.224 11 C -0.134 4.134 12 C -0.011 4.011 13 C -0.558 4.558 14 H 0.075 0.925 15 C -0.145 4.145 16 N -0.535 5.535 17 Si 0.721 3.279 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.326 4.326 22 C 0.333 3.667 23 O -0.401 6.401 24 N -0.168 5.168 25 H 0.104 0.896 26 H 0.105 0.895 27 H 0.120 0.880 28 H 0.218 0.782 29 H 0.125 0.875 30 H 0.126 0.874 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.036 0.964 36 H 0.036 0.964 37 H 0.070 0.930 38 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -17.625 24.539 9.839 31.774 hybrid contribution -1.074 -1.938 0.293 2.235 sum -18.699 22.601 10.133 31.034 Atomic orbital electron populations 1.20993 0.85348 1.05684 1.04581 1.19607 0.97388 0.83499 1.00561 1.24956 0.96642 1.02514 1.14371 1.85405 1.02312 0.87232 1.77939 1.26193 0.81404 1.02740 0.96086 1.67965 1.32367 0.97564 1.24574 1.20592 0.92247 0.90025 0.86412 1.22222 0.99964 0.97081 1.00641 1.87193 1.54415 1.46877 1.12942 1.23719 0.98473 0.95724 1.04433 1.21476 0.98521 1.01184 0.92228 1.19110 0.93169 0.91409 0.97451 1.21257 1.22837 1.15219 0.96500 0.92477 1.25023 0.96865 0.96037 0.96567 1.69967 1.34444 1.20025 1.29055 0.86515 0.79366 0.78106 0.83915 1.19675 1.20987 1.21001 1.22590 0.92069 1.00153 1.17782 1.17245 0.90163 0.80145 0.79103 1.90930 1.14765 1.82721 1.51659 1.45201 1.07191 1.09297 1.55154 0.89569 0.89550 0.87977 0.78198 0.87545 0.87390 0.90196 0.90254 0.92339 0.92272 0.96350 0.96372 0.93016 0.81532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 9.41 36.01 0.34 -0.34 16 2 C 0.10 0.77 6.60 -81.90 -0.54 0.23 16 3 C -0.25 -1.26 10.79 29.04 0.31 -0.95 16 4 S 0.22 1.48 23.37 -107.50 -2.51 -1.03 16 5 C 0.30 3.26 8.32 -87.90 -0.73 2.53 16 6 N -0.50 -6.30 10.36 -9.01 -0.09 -6.39 16 7 C 0.24 2.94 6.07 -82.47 -0.50 2.44 16 8 C -0.05 -0.60 6.32 36.01 0.23 -0.37 16 9 S -0.24 -3.75 21.72 -107.50 -2.33 -6.08 16 10 C -0.08 -1.26 5.94 37.16 0.22 -1.04 16 11 C -0.09 -1.95 5.16 -26.73 -0.14 -2.09 16 12 C 0.03 0.70 4.97 -27.88 -0.14 0.56 16 13 C -0.52 -14.69 9.11 -34.44 -0.31 -15.01 16 14 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 17 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 18 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 21 C -0.29 -3.60 9.67 -39.18 -0.38 -3.98 16 22 C 0.53 6.87 7.50 -15.01 -0.11 6.76 16 23 O -0.52 -7.64 14.79 4.83 0.07 -7.57 16 24 N -0.46 -4.97 2.82 -62.10 -0.18 -5.15 16 25 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.09 0.29 8.10 -51.93 -0.42 -0.13 16 27 H 0.10 0.93 5.91 -51.93 -0.31 0.62 16 28 H 0.20 0.27 8.06 -52.49 -0.42 -0.15 16 29 H 0.11 1.04 7.98 -51.92 -0.41 0.63 16 30 H 0.11 1.18 8.14 -51.92 -0.42 0.76 16 31 H 0.08 1.28 8.14 -51.92 -0.42 0.86 16 32 H 0.08 1.25 8.14 -51.92 -0.42 0.83 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.17 1.80 8.03 -52.49 -0.42 1.38 16 LS Contribution 351.81 15.07 5.30 5.30 Total: -1.00 -33.42 351.81 -10.79 -44.21 By element: Atomic # 1 Polarization: 0.72 SS G_CDS: -4.91 Total: -4.19 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: -1.85 Total: -9.74 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: 0.47 Total: -37.56 kcal Atomic # 8 Polarization: -7.64 SS G_CDS: 0.07 Total: -7.57 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: -2.27 SS G_CDS: -4.85 Total: -7.12 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.42 -10.79 -44.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161093923.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.976 kcal (2) G-P(sol) polarization free energy of solvation -33.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds