Wall clock time and date at job start Tue Mar 31 2020 13:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.30892 * 121.69071 * 2 1 4 4 S 1.75723 * 109.69862 * 180.02562 * 3 2 1 5 5 C 1.76444 * 90.71812 * 0.02562 * 4 3 2 6 6 N 1.33053 * 129.52594 * 179.97438 * 5 4 3 7 7 C 1.32416 * 121.90968 * 180.02562 * 6 5 4 8 8 C 1.50702 * 120.25863 * 179.97438 * 7 6 5 9 9 S 1.81399 * 109.47410 * 285.00128 * 8 7 6 10 10 C 1.81405 * 102.99706 * 180.02562 * 9 8 7 11 11 C 1.53006 * 109.46817 * 180.02562 * 10 9 8 12 12 C 1.52998 * 109.47006 * 180.02562 * 11 10 9 13 13 C 1.50705 * 109.46943 * 179.97438 * 12 11 10 14 14 H 1.07997 * 119.99647 * 359.97438 * 13 12 11 15 15 C 1.37874 * 119.99670 * 180.02562 * 13 12 11 16 16 N 1.31508 * 120.00397 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99639 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47236 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.46905 * 119.99794 * 17 15 13 20 20 H 1.48496 * 109.47019 * 239.99324 * 17 15 13 21 21 C 1.37869 * 119.48241 * 0.27762 * 7 6 5 22 22 C 1.39669 * 118.81033 * 359.49742 * 21 7 6 23 23 O 1.22101 * 120.19747 * 180.24631 * 22 21 7 24 24 N 1.35375 * 109.14186 * 0.02562 * 5 4 3 25 25 H 1.08994 * 109.46979 * 269.97093 * 1 2 3 26 26 H 1.08996 * 109.47109 * 29.97851 * 1 2 3 27 27 H 1.09003 * 109.47006 * 149.97320 * 1 2 3 28 28 H 1.07997 * 125.14816 * 0.06325 * 3 2 1 29 29 H 1.09004 * 109.46923 * 165.00113 * 8 7 6 30 30 H 1.09004 * 109.46818 * 45.00664 * 8 7 6 31 31 H 1.09000 * 109.47133 * 299.99843 * 10 9 8 32 32 H 1.08998 * 109.47280 * 60.00592 * 10 9 8 33 33 H 1.09004 * 109.46853 * 300.00228 * 11 10 9 34 34 H 1.09007 * 109.47210 * 59.99627 * 11 10 9 35 35 H 1.09000 * 109.46945 * 299.99656 * 12 11 10 36 36 H 1.09002 * 109.47076 * 59.99822 * 12 11 10 37 37 H 0.97002 * 120.00183 * 180.02562 * 16 15 13 38 38 H 1.07998 * 120.59763 * 179.72163 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1947 1.1138 0.0000 4 16 3.9135 0.7486 -0.0007 5 6 3.5686 -0.9817 -0.0018 6 7 4.4095 -2.0128 -0.0032 7 6 3.9808 -3.2657 -0.0043 8 6 4.9666 -4.4056 -0.0065 9 16 5.6956 -4.5715 -1.6592 10 6 6.8341 -5.9703 -1.4643 11 6 7.5407 -6.2418 -2.7940 12 6 8.5005 -7.4219 -2.6299 13 6 9.1960 -7.6897 -3.9398 14 1 8.9751 -7.0795 -4.8030 15 6 10.1134 -8.7144 -4.0362 16 7 10.3819 -9.4578 -2.9852 17 14 10.9749 -9.0468 -5.6601 18 1 10.4999 -8.0776 -6.6800 19 1 12.4417 -8.8991 -5.4815 20 1 10.6677 -10.4283 -6.1097 21 6 2.6256 -3.5191 -0.0099 22 6 1.7390 -2.4399 -0.0035 23 8 0.5338 -2.6353 -0.0036 24 7 2.2276 -1.1671 -0.0021 25 1 -0.3633 -0.0005 1.0276 26 1 -0.3633 0.8901 -0.5135 27 1 -0.3633 -0.8898 -0.5143 28 1 1.7699 2.1067 0.0010 29 1 4.4535 -5.3301 0.2588 30 1 5.7544 -4.2060 0.7199 31 1 7.5753 -5.7320 -0.7015 32 1 6.2740 -6.8554 -1.1628 33 1 6.7997 -6.4799 -3.5572 34 1 8.1009 -5.3565 -3.0952 35 1 9.2415 -7.1842 -1.8666 36 1 7.9399 -8.3070 -2.3289 37 1 11.0276 -10.1785 -3.0530 38 1 2.2562 -4.5339 -0.0154 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161093923.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:54 Heat of formation + Delta-G solvation = 5.270592 kcal Electronic energy + Delta-G solvation = -21055.032497 eV Core-core repulsion = 17728.987439 eV Total energy + Delta-G solvation = -3326.045058 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.62674 -39.06783 -39.01581 -36.35229 -34.14398 -34.03823 -32.50823 -30.15797 -29.52713 -29.30831 -26.08323 -25.39232 -24.26054 -22.32874 -21.98434 -19.80222 -19.70047 -18.57964 -18.09496 -18.03128 -17.19116 -16.63773 -16.52972 -16.21493 -15.81246 -15.34047 -15.10472 -14.87952 -14.61733 -14.49501 -14.45663 -14.26453 -14.21189 -13.85200 -13.56172 -13.41433 -12.89646 -12.75812 -12.68634 -12.34304 -12.32598 -11.64708 -11.47855 -11.41955 -11.30887 -11.26379 -11.18122 -10.91765 -10.56120 -10.39742 -8.79753 -8.67750 -8.20818 -6.31346 -1.16594 -0.56550 0.10198 0.35744 0.37722 0.92974 1.04402 1.40481 1.40947 1.54060 1.55590 2.31405 2.41421 2.68773 3.01462 3.12673 3.45779 3.80348 3.98044 4.06700 4.10647 4.14855 4.15648 4.34194 4.39783 4.55020 4.60634 4.61249 4.70763 4.83632 4.98581 4.98747 5.08342 5.14714 5.34541 5.50229 5.69885 5.83323 6.23326 6.29887 6.41010 6.84459 7.37688 8.90972 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.028156 B = 0.002018 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.213399 B =13871.735769 C =14311.712601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.057 3.943 3 C -0.209 4.209 4 S 0.272 5.728 5 C 0.278 3.722 6 N -0.525 5.525 7 C 0.237 3.763 8 C -0.038 4.038 9 S -0.266 6.266 10 C -0.067 4.067 11 C -0.082 4.082 12 C 0.031 3.969 13 C -0.544 4.544 14 H 0.058 0.942 15 C 0.000 4.000 16 N -0.931 5.931 17 Si 0.964 3.036 18 H -0.264 1.264 19 H -0.277 1.277 20 H -0.277 1.277 21 C -0.312 4.312 22 C 0.519 3.481 23 O -0.553 6.553 24 N -0.457 5.457 25 H 0.089 0.911 26 H 0.120 0.880 27 H 0.069 0.931 28 H 0.248 0.752 29 H 0.127 0.873 30 H 0.119 0.881 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.054 0.946 34 H 0.054 0.946 35 H -0.001 1.001 36 H -0.001 1.001 37 H 0.264 0.736 38 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.042 26.166 10.514 34.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.050 4.050 3 C -0.345 4.345 4 S 0.525 5.475 5 C -0.087 4.087 6 N -0.253 5.253 7 C 0.106 3.894 8 C -0.186 4.186 9 S -0.037 6.037 10 C -0.215 4.215 11 C -0.120 4.120 12 C -0.008 4.008 13 C -0.582 4.582 14 H 0.076 0.924 15 C -0.197 4.197 16 N -0.571 5.571 17 Si 0.789 3.211 18 H -0.188 1.188 19 H -0.202 1.202 20 H -0.203 1.203 21 C -0.344 4.344 22 C 0.324 3.676 23 O -0.435 6.435 24 N -0.167 5.167 25 H 0.107 0.893 26 H 0.139 0.861 27 H 0.088 0.912 28 H 0.264 0.736 29 H 0.145 0.855 30 H 0.137 0.863 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.017 0.983 36 H 0.017 0.983 37 H 0.073 0.927 38 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -17.906 27.349 9.673 34.090 hybrid contribution -1.004 -2.538 0.411 2.761 sum -18.910 24.810 10.084 32.785 Atomic orbital electron populations 1.20969 0.84511 1.05710 1.04822 1.20022 0.98258 0.83174 1.03559 1.25591 0.95531 1.03533 1.09886 1.85367 1.03066 0.83628 1.75452 1.26921 0.81409 1.04379 0.95945 1.67958 1.33227 0.97984 1.26167 1.20597 0.92129 0.90341 0.86379 1.22274 1.00182 0.98150 0.98009 1.87197 1.54294 1.45821 1.16408 1.23428 0.98961 0.96982 1.02138 1.21170 0.97604 0.98853 0.94420 1.18983 0.93368 0.92614 0.95825 1.21694 1.23400 1.15500 0.97593 0.92418 1.25947 0.97637 0.95778 1.00384 1.70082 1.35155 1.20595 1.31268 0.85410 0.78196 0.78164 0.79354 1.18822 1.20236 1.20312 1.22641 0.92174 1.00506 1.19064 1.17361 0.89893 0.81141 0.79214 1.90908 1.15653 1.83456 1.53453 1.45200 1.07632 1.09713 1.54170 0.89286 0.86118 0.91243 0.73579 0.85455 0.86264 0.89566 0.89437 0.92731 0.92689 0.98281 0.98299 0.92701 0.81032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.14 9.41 71.24 0.67 -0.47 16 2 C 0.06 0.78 6.60 41.80 0.28 1.05 16 3 C -0.21 -1.29 10.79 67.89 0.73 -0.55 16 4 S 0.27 2.84 23.37 -56.49 -1.32 1.52 16 5 C 0.28 5.71 8.32 179.40 1.49 7.20 16 6 N -0.52 -13.03 10.36 -182.43 -1.89 -14.92 16 7 C 0.24 5.85 6.07 42.38 0.26 6.11 16 8 C -0.04 -0.88 6.32 71.24 0.45 -0.42 16 9 S -0.27 -8.09 21.72 -56.49 -1.23 -9.32 16 10 C -0.07 -2.23 5.94 71.98 0.43 -1.80 16 11 C -0.08 -3.40 5.16 30.60 0.16 -3.25 16 12 C 0.03 1.62 4.97 29.85 0.15 1.77 16 13 C -0.54 -31.20 9.11 25.60 0.23 -30.97 16 14 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 15 C 0.00 0.03 5.46 84.65 0.46 0.49 16 16 N -0.93 -56.39 13.29 21.45 0.28 -56.10 16 17 Si 0.96 44.57 29.54 68.60 2.03 46.60 16 18 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 20 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 21 C -0.31 -7.83 9.67 22.53 0.22 -7.61 16 22 C 0.52 13.89 7.50 84.34 0.63 14.52 16 23 O -0.55 -17.01 14.79 -5.65 -0.08 -17.10 16 24 N -0.46 -9.71 2.82 -467.53 -1.32 -11.03 16 25 H 0.09 0.89 8.14 -2.39 -0.02 0.88 16 26 H 0.12 0.43 8.10 -2.39 -0.02 0.41 16 27 H 0.07 1.29 5.91 -2.39 -0.01 1.28 16 28 H 0.25 -0.88 8.06 -2.91 -0.02 -0.91 16 29 H 0.13 2.36 7.98 -2.39 -0.02 2.34 16 30 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 32 H 0.09 2.74 8.14 -2.39 -0.02 2.73 16 33 H 0.05 2.29 8.14 -2.38 -0.02 2.27 16 34 H 0.05 2.31 8.14 -2.38 -0.02 2.29 16 35 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 36 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 37 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 38 H 0.17 3.87 8.03 -2.91 -0.02 3.85 16 Total: -1.00 -74.98 351.81 3.70 -71.28 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: 1.07 Total: 2.99 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: 6.16 Total: -13.93 kcal Atomic # 7 Polarization: -79.13 SS G_CDS: -2.92 Total: -82.05 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -0.08 Total: -17.10 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Atomic # 16 Polarization: -5.25 SS G_CDS: -2.55 Total: -7.79 kcal Total: -74.98 3.70 -71.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161093923.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.550 kcal (2) G-P(sol) polarization free energy of solvation -74.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds