Wall clock time and date at job start Tue Mar 31 2020 13:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47247 * 2 1 4 4 S 1.81401 * 109.47072 * 240.00248 * 2 1 3 5 5 C 1.81400 * 102.99960 * 64.99917 * 4 2 1 6 6 C 1.53002 * 109.47160 * 180.02562 * 5 4 2 7 7 C 1.52998 * 109.47419 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.47327 * 180.02562 * 7 6 5 9 9 H 1.08000 * 119.99765 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00026 * 179.97438 * 8 7 6 11 11 N 1.31509 * 120.00015 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99925 * 180.02562 * 10 8 7 13 13 H 1.48491 * 109.47138 * 90.00527 * 12 10 8 14 14 H 1.48503 * 109.47069 * 210.00395 * 12 10 8 15 15 H 1.48504 * 109.46936 * 330.00327 * 12 10 8 16 16 C 1.50697 * 109.47088 * 119.99860 * 2 1 3 17 17 N 1.30924 * 126.40605 * 254.99624 * 16 2 1 18 18 C 1.35390 * 105.57683 * 179.97438 * 17 16 2 19 19 C 1.47733 * 126.44808 * 179.97438 * 18 17 16 20 20 C 1.34859 * 125.27058 * 180.02562 * 19 18 17 21 21 C 1.37823 * 114.72111 * 179.97438 * 20 19 18 22 22 C 1.33721 * 115.07590 * 0.02562 * 21 20 19 23 23 S 1.75869 * 109.74156 * 359.97438 * 22 21 20 24 24 N 1.31032 * 107.10552 * 0.22838 * 18 17 16 25 25 O 1.21294 * 110.03810 * 359.60360 * 24 18 17 26 26 H 1.09000 * 109.47247 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47327 * 300.00129 * 1 2 3 28 28 H 1.09001 * 109.47230 * 59.99550 * 1 2 3 29 29 H 1.09004 * 109.47033 * 299.99617 * 5 4 2 30 30 H 1.08998 * 109.47418 * 60.00156 * 5 4 2 31 31 H 1.09002 * 109.47130 * 300.00031 * 6 5 4 32 32 H 1.09008 * 109.47108 * 59.99769 * 6 5 4 33 33 H 1.09002 * 109.46939 * 300.00079 * 7 6 5 34 34 H 1.08998 * 109.47345 * 59.99923 * 7 6 5 35 35 H 0.96999 * 120.00416 * 179.97438 * 11 10 8 36 36 H 1.07995 * 122.63982 * 359.97438 * 20 19 18 37 37 H 1.08008 * 122.46068 * 180.02562 * 21 20 19 38 38 H 1.07993 * 125.13021 * 180.26195 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1346 -0.8551 -1.4812 5 6 1.5664 0.2154 -2.8309 6 6 2.0038 -0.3783 -4.1714 7 6 1.5251 0.5249 -5.3098 8 6 1.9555 -0.0603 -6.6302 9 1 2.5142 -0.9842 -6.6550 10 6 1.6350 0.5833 -7.8067 11 7 0.9543 1.7081 -7.7766 12 14 2.1679 -0.1424 -9.4434 13 1 1.1120 -1.0572 -9.9465 14 1 2.3827 0.9522 -10.4238 15 1 3.4327 -0.8989 -9.2611 16 6 2.0323 -0.7104 1.2305 17 7 2.5485 -0.1497 2.2950 18 6 2.8522 -1.1697 3.1320 19 6 3.4617 -1.0531 4.4727 20 6 3.7551 -2.0870 5.2873 21 6 4.3209 -1.7290 6.4920 22 6 4.4921 -0.4148 6.6695 23 16 3.9175 0.4557 5.2534 24 7 2.5090 -2.2801 2.5269 25 8 2.0336 -2.0308 1.4392 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 0.4791 0.2882 -2.8037 30 1 2.0000 1.2086 -2.7142 31 1 3.0910 -0.4515 -4.1989 32 1 1.5698 -1.3714 -4.2879 33 1 0.4379 0.5985 -5.2825 34 1 1.9595 1.5177 -5.1932 35 1 0.7292 2.1611 -8.6042 36 1 3.5618 -3.1145 5.0171 37 1 4.6053 -2.4566 7.2379 38 1 4.9228 0.0428 7.5478 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161500067.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:58 Heat of formation + Delta-G solvation = 86.683251 kcal Electronic energy + Delta-G solvation = -20781.742476 eV Core-core repulsion = 17459.227736 eV Total energy + Delta-G solvation = -3322.514740 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -45.82424 -38.34378 -36.27921 -34.98917 -34.54446 -32.14115 -31.66120 -29.78832 -27.53991 -25.64213 -25.22090 -23.79130 -23.47063 -22.15828 -20.42437 -19.37262 -18.81290 -18.35617 -17.06541 -16.53766 -16.13152 -15.94716 -15.70165 -14.78179 -14.60851 -14.27779 -13.97903 -13.82814 -13.63886 -13.16988 -13.10257 -12.59757 -12.55558 -12.35932 -12.22018 -12.05993 -11.74160 -11.72579 -11.49390 -11.18593 -10.94103 -10.90509 -10.69890 -10.49771 -9.88848 -9.85741 -9.39176 -9.16277 -9.01562 -8.95592 -8.40181 -7.70274 -6.05265 -4.07850 0.05097 0.75951 1.00058 1.47881 1.50286 1.89544 2.33126 2.52086 2.57966 3.10603 3.30299 3.36710 3.40469 3.74215 4.41291 4.42826 4.46084 4.57472 4.79633 4.93274 5.07871 5.12922 5.30020 5.31066 5.33970 5.43047 5.49587 5.53198 5.56757 5.77079 5.78845 5.89588 6.02684 6.46480 6.62593 6.94223 7.58312 7.69516 7.78709 7.93193 8.34578 8.98408 9.56720 11.05945 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.035956 B = 0.001843 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.544262 B =15187.213005 C =15243.566130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.019 3.981 3 H 0.132 0.868 4 S -0.235 6.235 5 C -0.074 4.074 6 C -0.096 4.096 7 C 0.028 3.972 8 C -0.522 4.522 9 H 0.057 0.943 10 C 0.057 3.943 11 N -0.895 5.895 12 Si 0.893 3.107 13 H -0.280 1.280 14 H -0.286 1.286 15 H -0.273 1.273 16 C 0.220 3.780 17 N -0.470 5.470 18 C 0.237 3.763 19 C -0.132 4.132 20 C -0.091 4.091 21 C -0.139 4.139 22 C -0.210 4.210 23 S 0.188 5.812 24 N -0.366 5.366 25 O 0.101 5.899 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.019 0.981 34 H 0.018 0.982 35 H 0.261 0.739 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.760 -2.988 29.280 29.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.111 4.111 3 H 0.150 0.850 4 S -0.007 6.007 5 C -0.222 4.222 6 C -0.135 4.135 7 C -0.011 4.011 8 C -0.560 4.560 9 H 0.075 0.925 10 C -0.144 4.144 11 N -0.534 5.534 12 Si 0.721 3.279 13 H -0.206 1.206 14 H -0.212 1.212 15 H -0.198 1.198 16 C -0.001 4.001 17 N -0.203 5.203 18 C -0.034 4.034 19 C -0.251 4.251 20 C -0.126 4.126 21 C -0.169 4.169 22 C -0.347 4.347 23 S 0.452 5.548 24 N -0.071 5.071 25 O 0.038 5.962 26 H 0.098 0.902 27 H 0.089 0.911 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.071 0.929 36 H 0.166 0.834 37 H 0.166 0.834 38 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 3.449 -2.702 29.335 29.661 hybrid contribution -0.342 -0.643 -0.590 0.937 sum 3.107 -3.345 28.745 29.105 Atomic orbital electron populations 1.22175 0.89975 1.04677 1.04045 1.21569 0.99997 1.00984 0.88582 0.85046 1.87312 1.75632 1.38623 0.99109 1.23803 1.03628 0.99763 0.94971 1.21501 1.00974 1.00435 0.90620 1.19104 0.96663 0.94345 0.90955 1.21207 1.35346 1.08489 0.90961 0.92511 1.25012 0.95140 0.94925 0.99318 1.69952 1.39253 1.16717 1.27505 0.86571 0.79085 0.78740 0.83497 1.20614 1.21206 1.19823 1.27652 0.94938 0.81301 0.96250 1.72065 1.17153 1.29543 1.01578 1.22668 1.00800 0.84334 0.95582 1.21276 1.10949 0.98702 0.94142 1.20374 0.99093 0.99936 0.93191 1.20044 1.02843 0.95935 0.98103 1.26081 1.07607 0.97844 1.03179 1.84511 1.56883 1.05728 1.07633 1.75041 1.15259 1.22326 0.94512 1.85359 1.57606 1.26349 1.26862 0.90234 0.91079 0.89593 0.89753 0.89949 0.92217 0.92101 0.96297 0.96316 0.92937 0.83445 0.83438 0.81047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.08 37.16 0.34 -1.03 16 2 C 0.02 0.21 3.32 -27.89 -0.09 0.12 16 3 H 0.13 1.33 8.14 -51.92 -0.42 0.91 16 4 S -0.23 -3.30 21.06 -107.50 -2.26 -5.56 16 5 C -0.07 -1.12 5.64 37.16 0.21 -0.91 16 6 C -0.10 -1.86 5.16 -26.73 -0.14 -2.00 16 7 C 0.03 0.69 4.97 -27.88 -0.14 0.55 16 8 C -0.52 -14.38 9.11 -34.44 -0.31 -14.69 16 9 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 10 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 11 N -0.90 -26.21 13.29 55.43 0.74 -25.48 16 12 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 15 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 16 C 0.22 2.81 7.05 -12.98 -0.09 2.72 16 17 N -0.47 -6.33 11.58 -9.89 -0.11 -6.44 16 18 C 0.24 3.17 8.02 -156.05 -1.25 1.92 16 19 C -0.13 -1.46 6.44 -36.90 -0.24 -1.70 16 20 C -0.09 -0.83 10.05 -40.93 -0.41 -1.25 16 21 C -0.14 -0.95 10.16 -41.32 -0.42 -1.37 16 22 C -0.21 -1.34 11.23 29.15 0.33 -1.02 16 23 S 0.19 1.64 23.32 -107.50 -2.51 -0.86 16 24 N -0.37 -5.12 12.16 30.98 0.38 -4.75 16 25 O 0.10 1.38 11.19 18.00 0.20 1.58 16 26 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.09 0.75 6.92 -51.93 -0.36 0.39 16 29 H 0.08 1.18 7.14 -51.92 -0.37 0.81 16 30 H 0.08 1.19 8.14 -51.92 -0.42 0.77 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.06 1.19 8.14 -51.92 -0.42 0.76 16 33 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 37 H 0.15 0.64 8.06 -52.48 -0.42 0.22 16 38 H 0.17 0.61 8.06 -52.49 -0.42 0.19 16 LS Contribution 358.57 15.07 5.40 5.40 Total: -1.00 -30.88 358.57 -10.43 -41.31 By element: Atomic # 1 Polarization: 0.55 SS G_CDS: -4.92 Total: -4.37 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: -2.32 Total: -17.14 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: 1.00 Total: -36.66 kcal Atomic # 8 Polarization: 1.38 SS G_CDS: 0.20 Total: 1.58 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -4.77 Total: -6.42 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.88 -10.43 -41.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161500067.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.988 kcal (2) G-P(sol) polarization free energy of solvation -30.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds