Wall clock time and date at job start Tue Mar 31 2020 13:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47247 * 2 1 4 4 S 1.81401 * 109.47072 * 240.00248 * 2 1 3 5 5 C 1.81400 * 102.99960 * 64.99917 * 4 2 1 6 6 C 1.53002 * 109.47160 * 180.02562 * 5 4 2 7 7 C 1.52998 * 109.47419 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.47327 * 180.02562 * 7 6 5 9 9 H 1.08000 * 119.99765 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00026 * 179.97438 * 8 7 6 11 11 N 1.31509 * 120.00015 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99925 * 180.02562 * 10 8 7 13 13 H 1.48491 * 109.47138 * 90.00527 * 12 10 8 14 14 H 1.48503 * 109.47069 * 210.00395 * 12 10 8 15 15 H 1.48504 * 109.46936 * 330.00327 * 12 10 8 16 16 C 1.50697 * 109.47088 * 119.99860 * 2 1 3 17 17 N 1.30924 * 126.40605 * 254.99624 * 16 2 1 18 18 C 1.35390 * 105.57683 * 179.97438 * 17 16 2 19 19 C 1.47733 * 126.44808 * 179.97438 * 18 17 16 20 20 C 1.34859 * 125.27058 * 180.02562 * 19 18 17 21 21 C 1.37823 * 114.72111 * 179.97438 * 20 19 18 22 22 C 1.33721 * 115.07590 * 0.02562 * 21 20 19 23 23 S 1.75869 * 109.74156 * 359.97438 * 22 21 20 24 24 N 1.31032 * 107.10552 * 0.22838 * 18 17 16 25 25 O 1.21294 * 110.03810 * 359.60360 * 24 18 17 26 26 H 1.09000 * 109.47247 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47327 * 300.00129 * 1 2 3 28 28 H 1.09001 * 109.47230 * 59.99550 * 1 2 3 29 29 H 1.09004 * 109.47033 * 299.99617 * 5 4 2 30 30 H 1.08998 * 109.47418 * 60.00156 * 5 4 2 31 31 H 1.09002 * 109.47130 * 300.00031 * 6 5 4 32 32 H 1.09008 * 109.47108 * 59.99769 * 6 5 4 33 33 H 1.09002 * 109.46939 * 300.00079 * 7 6 5 34 34 H 1.08998 * 109.47345 * 59.99923 * 7 6 5 35 35 H 0.96999 * 120.00416 * 179.97438 * 11 10 8 36 36 H 1.07995 * 122.63982 * 359.97438 * 20 19 18 37 37 H 1.08008 * 122.46068 * 180.02562 * 21 20 19 38 38 H 1.07993 * 125.13021 * 180.26195 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1346 -0.8551 -1.4812 5 6 1.5664 0.2154 -2.8309 6 6 2.0038 -0.3783 -4.1714 7 6 1.5251 0.5249 -5.3098 8 6 1.9555 -0.0603 -6.6302 9 1 2.5142 -0.9842 -6.6550 10 6 1.6350 0.5833 -7.8067 11 7 0.9543 1.7081 -7.7766 12 14 2.1679 -0.1424 -9.4434 13 1 1.1120 -1.0572 -9.9465 14 1 2.3827 0.9522 -10.4238 15 1 3.4327 -0.8989 -9.2611 16 6 2.0323 -0.7104 1.2305 17 7 2.5485 -0.1497 2.2950 18 6 2.8522 -1.1697 3.1320 19 6 3.4617 -1.0531 4.4727 20 6 3.7551 -2.0870 5.2873 21 6 4.3209 -1.7290 6.4920 22 6 4.4921 -0.4148 6.6695 23 16 3.9175 0.4557 5.2534 24 7 2.5090 -2.2801 2.5269 25 8 2.0336 -2.0308 1.4392 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 0.4791 0.2882 -2.8037 30 1 2.0000 1.2086 -2.7142 31 1 3.0910 -0.4515 -4.1989 32 1 1.5698 -1.3714 -4.2879 33 1 0.4379 0.5985 -5.2825 34 1 1.9595 1.5177 -5.1932 35 1 0.7292 2.1611 -8.6042 36 1 3.5618 -3.1145 5.0171 37 1 4.6053 -2.4566 7.2379 38 1 4.9228 0.0428 7.5478 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161500067.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:58 Heat of formation + Delta-G solvation = 69.677633 kcal Electronic energy + Delta-G solvation = -20782.479895 eV Core-core repulsion = 17459.227736 eV Total energy + Delta-G solvation = -3323.252159 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -46.81273 -38.98888 -37.23301 -36.34558 -35.88104 -34.04407 -32.57552 -30.53810 -29.35864 -26.42553 -26.08493 -25.36863 -24.58816 -23.04617 -22.07386 -20.06885 -19.67042 -19.34124 -18.54485 -17.87494 -17.22418 -16.87130 -16.58932 -16.47943 -16.14894 -15.33751 -14.86053 -14.56846 -14.51405 -14.44821 -13.95434 -13.79749 -13.74884 -13.57970 -13.25861 -13.13011 -13.00102 -12.88245 -12.69719 -12.60542 -12.43963 -12.35890 -11.83026 -11.65807 -11.60909 -11.32854 -11.11559 -10.91735 -10.53431 -9.72873 -9.59182 -8.83023 -8.19171 -6.29078 -0.70340 -0.22022 0.33876 0.48355 0.90483 1.08107 1.30252 1.42282 1.42492 1.50640 1.53814 1.79382 2.22031 2.42591 2.82470 3.14702 3.51837 3.62655 3.93644 4.07654 4.08668 4.10592 4.23791 4.30603 4.52753 4.56086 4.57916 4.64953 4.70954 4.85827 4.97513 4.98908 5.11547 5.16747 5.17547 5.32742 5.52784 5.73074 5.85832 6.25518 6.80475 6.86751 7.39832 8.92153 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.035956 B = 0.001843 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.544262 B =15187.213005 C =15243.566130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.032 3.968 3 H 0.146 0.854 4 S -0.253 6.253 5 C -0.065 4.065 6 C -0.084 4.084 7 C 0.031 3.969 8 C -0.544 4.544 9 H 0.057 0.943 10 C 0.003 3.997 11 N -0.929 5.929 12 Si 0.961 3.039 13 H -0.273 1.273 14 H -0.282 1.282 15 H -0.266 1.266 16 C 0.221 3.779 17 N -0.482 5.482 18 C 0.237 3.763 19 C -0.177 4.177 20 C -0.082 4.082 21 C -0.147 4.147 22 C -0.183 4.183 23 S 0.172 5.828 24 N -0.386 5.386 25 O 0.087 5.913 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.002 0.998 34 H -0.001 1.001 35 H 0.264 0.736 36 H 0.148 0.852 37 H 0.178 0.822 38 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.369 -3.245 31.087 31.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.098 4.098 3 H 0.164 0.836 4 S -0.026 6.026 5 C -0.213 4.213 6 C -0.123 4.123 7 C -0.008 4.008 8 C -0.583 4.583 9 H 0.075 0.925 10 C -0.195 4.195 11 N -0.569 5.569 12 Si 0.785 3.215 13 H -0.198 1.198 14 H -0.207 1.207 15 H -0.191 1.191 16 C -0.001 4.001 17 N -0.216 5.216 18 C -0.033 4.033 19 C -0.296 4.296 20 C -0.118 4.118 21 C -0.176 4.176 22 C -0.320 4.320 23 S 0.436 5.564 24 N -0.094 5.094 25 O 0.028 5.972 26 H 0.097 0.903 27 H 0.105 0.895 28 H 0.112 0.888 29 H 0.116 0.884 30 H 0.108 0.892 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.021 0.979 34 H 0.018 0.982 35 H 0.072 0.928 36 H 0.165 0.835 37 H 0.196 0.804 38 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 4.049 -2.968 31.122 31.524 hybrid contribution -0.485 -0.557 -0.967 1.217 sum 3.564 -3.525 30.155 30.569 Atomic orbital electron populations 1.22195 0.88169 1.05028 1.05183 1.21675 1.01280 1.00766 0.86126 0.83646 1.87335 1.76111 1.38812 1.00317 1.23518 1.04470 0.99854 0.93439 1.21187 1.00369 0.99322 0.91393 1.18978 0.95401 0.94286 0.92115 1.21674 1.35290 1.08656 0.92630 0.92466 1.25894 0.95165 0.95309 1.03167 1.70064 1.40335 1.17980 1.28565 0.85513 0.78957 0.78091 0.78899 1.19803 1.20730 1.19078 1.27927 0.94487 0.81133 0.96535 1.72066 1.17657 1.29884 1.01972 1.23115 0.99937 0.83981 0.96300 1.21473 1.13634 1.00355 0.94091 1.20649 0.97810 0.99646 0.93675 1.20327 1.02659 0.96849 0.97779 1.26529 1.05397 0.97382 1.02727 1.84517 1.57335 1.05537 1.08966 1.75012 1.16639 1.22896 0.94887 1.85325 1.58077 1.26764 1.27047 0.90340 0.89513 0.88762 0.88412 0.89178 0.92800 0.92355 0.97949 0.98219 0.92752 0.83471 0.80430 0.77602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.08 71.98 0.65 -1.80 16 2 C 0.03 0.67 3.32 29.85 0.10 0.77 16 3 H 0.15 2.72 8.14 -2.39 -0.02 2.70 16 4 S -0.25 -6.96 21.06 -56.49 -1.19 -8.15 16 5 C -0.06 -1.93 5.64 71.98 0.41 -1.52 16 6 C -0.08 -3.26 5.16 30.59 0.16 -3.10 16 7 C 0.03 1.56 4.97 29.85 0.15 1.70 16 8 C -0.54 -30.36 9.11 25.60 0.23 -30.13 16 9 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 10 C 0.00 0.16 5.46 84.66 0.46 0.62 16 11 N -0.93 -55.09 13.29 21.45 0.28 -54.80 16 12 Si 0.96 43.79 29.54 68.60 2.03 45.82 16 13 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 14 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 15 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 16 C 0.22 5.57 7.05 88.35 0.62 6.19 16 17 N -0.48 -12.93 11.58 -302.32 -3.50 -16.43 16 18 C 0.24 6.39 8.02 136.96 1.10 7.49 16 19 C -0.18 -3.86 6.44 24.01 0.15 -3.71 16 20 C -0.08 -1.41 10.05 21.39 0.22 -1.19 16 21 C -0.15 -1.61 10.16 21.15 0.21 -1.40 16 22 C -0.18 -1.79 11.23 66.79 0.75 -1.04 16 23 S 0.17 2.81 23.32 -56.49 -1.32 1.49 16 24 N -0.39 -10.99 12.16 -58.81 -0.72 -11.70 16 25 O 0.09 2.42 11.19 74.49 0.83 3.25 16 26 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 28 H 0.09 1.45 6.92 -2.39 -0.02 1.44 16 29 H 0.10 2.64 7.14 -2.39 -0.02 2.62 16 30 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 33 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 34 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 35 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 36 H 0.15 2.44 8.06 -2.91 -0.02 2.41 16 37 H 0.18 0.86 8.06 -2.91 -0.02 0.83 16 38 H 0.21 0.53 8.06 -2.91 -0.02 0.51 16 Total: -1.00 -67.53 358.57 2.71 -64.82 By element: Atomic # 1 Polarization: 1.75 SS G_CDS: 1.07 Total: 2.82 kcal Atomic # 6 Polarization: -32.33 SS G_CDS: 5.22 Total: -27.11 kcal Atomic # 7 Polarization: -79.01 SS G_CDS: -3.93 Total: -82.94 kcal Atomic # 8 Polarization: 2.42 SS G_CDS: 0.83 Total: 3.25 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: -4.15 SS G_CDS: -2.51 Total: -6.65 kcal Total: -67.53 2.71 -64.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161500067.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.497 kcal (2) G-P(sol) polarization free energy of solvation -67.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds