Wall clock time and date at job start Tue Mar 31 2020 13:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47232 * 2 1 4 4 S 1.81402 * 109.47056 * 120.00172 * 2 1 3 5 5 C 1.81404 * 102.99990 * 294.99933 * 4 2 1 6 6 C 1.52995 * 109.46977 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47147 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.47412 * 180.02562 * 7 6 5 9 9 H 1.07999 * 119.99892 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00100 * 180.02562 * 8 7 6 11 11 N 1.31520 * 119.99968 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00032 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47211 * 359.97438 * 12 10 8 14 14 H 1.48493 * 109.47367 * 120.00168 * 12 10 8 15 15 H 1.48505 * 109.47199 * 240.00123 * 12 10 8 16 16 C 1.50696 * 109.46934 * 239.99817 * 2 1 3 17 17 N 1.30930 * 126.39965 * 105.00408 * 16 2 1 18 18 C 1.35395 * 105.57939 * 179.97438 * 17 16 2 19 19 C 1.47728 * 126.44956 * 179.73369 * 18 17 16 20 20 C 1.34859 * 125.26804 * 179.72599 * 19 18 17 21 21 C 1.37831 * 114.72131 * 179.85739 * 20 19 18 22 22 C 1.33718 * 115.06695 * 0.42954 * 21 20 19 23 23 S 1.75860 * 109.75123 * 359.76848 * 22 21 20 24 24 N 1.31042 * 107.09717 * 0.02562 * 18 17 16 25 25 O 1.21287 * 110.04731 * 359.97438 * 24 18 17 26 26 H 1.09000 * 109.46848 * 60.00072 * 1 2 3 27 27 H 1.08999 * 109.47232 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46629 * 300.00143 * 1 2 3 29 29 H 1.08997 * 109.46776 * 300.00035 * 5 4 2 30 30 H 1.09005 * 109.46980 * 60.00106 * 5 4 2 31 31 H 1.08997 * 109.47542 * 299.99745 * 6 5 4 32 32 H 1.09005 * 109.47033 * 60.00317 * 6 5 4 33 33 H 1.09003 * 109.47199 * 300.00332 * 7 6 5 34 34 H 1.08996 * 109.47401 * 59.99747 * 7 6 5 35 35 H 0.97000 * 119.99930 * 180.02562 * 11 10 8 36 36 H 1.07999 * 122.64144 * 0.02562 * 20 19 18 37 37 H 1.07998 * 122.46624 * 180.17314 * 21 20 19 38 38 H 1.08007 * 125.12087 * 179.73065 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 16 2.1347 -0.8552 1.4811 5 6 1.5664 0.2152 2.8309 6 6 2.0039 -0.3786 4.1714 7 6 1.5252 0.5245 5.3098 8 6 1.9567 -0.0600 6.6301 9 1 2.5160 -0.9836 6.6548 10 6 1.6365 0.5836 7.8066 11 7 0.9549 1.7081 7.7766 12 14 2.1706 -0.1413 9.4432 13 1 2.9183 -1.4022 9.2056 14 1 3.0451 0.8272 10.1518 15 1 0.9725 -0.4258 10.2733 16 6 2.0323 -0.7104 -1.2304 17 7 2.5485 -0.1497 -2.2950 18 6 2.8534 -1.1697 -3.1316 19 6 3.4577 -1.0526 -4.4745 20 6 3.7566 -2.0869 -5.2868 21 6 4.3126 -1.7282 -6.4959 22 6 4.4788 -0.4136 -6.6753 23 16 3.9058 0.4567 -5.2587 24 7 2.5056 -2.2798 -2.5284 25 8 2.0343 -2.0309 -1.4389 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3632 0.5139 0.8900 29 1 2.0002 1.2084 2.7142 30 1 0.4792 0.2881 2.8038 31 1 1.5698 -1.3716 4.2879 32 1 3.0912 -0.4518 4.1988 33 1 1.9596 1.5174 5.1931 34 1 0.4381 0.5982 5.2826 35 1 0.7299 2.1611 8.6043 36 1 3.5722 -3.1151 -5.0126 37 1 4.5970 -2.4557 -7.2417 38 1 4.9019 0.0446 -7.5572 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161500159.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:00 Heat of formation + Delta-G solvation = 69.592205 kcal Electronic energy + Delta-G solvation = -20782.386456 eV Core-core repulsion = 17459.130592 eV Total energy + Delta-G solvation = -3323.255864 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -46.81221 -38.98866 -37.23292 -36.34710 -35.88008 -34.04459 -32.57482 -30.53804 -29.36015 -26.42500 -26.08486 -25.37105 -24.58799 -23.04660 -22.07497 -20.07062 -19.66785 -19.34189 -18.54891 -17.87537 -17.22442 -16.87129 -16.58913 -16.47829 -16.14928 -15.33699 -14.85875 -14.56973 -14.51467 -14.45743 -13.95443 -13.79427 -13.74799 -13.57950 -13.25850 -13.13484 -12.99878 -12.88981 -12.71687 -12.59408 -12.43938 -12.34530 -11.83039 -11.65812 -11.61325 -11.32252 -11.10894 -10.91756 -10.54101 -9.72866 -9.59148 -8.83022 -8.19527 -6.29329 -0.70340 -0.22037 0.33874 0.48452 0.90490 1.08075 1.30272 1.41036 1.42288 1.50629 1.54920 1.79373 2.22064 2.42425 2.82427 3.14429 3.51842 3.62652 3.93669 4.07647 4.08669 4.10603 4.23815 4.30604 4.52735 4.56093 4.57932 4.64970 4.70952 4.85813 4.97537 4.98887 5.11553 5.16724 5.17533 5.32756 5.52915 5.72986 5.85813 6.25394 6.80507 6.86775 7.39674 8.92025 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.036018 B = 0.001843 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.199354 B =15189.201452 C =15247.819105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.032 3.968 3 H 0.146 0.854 4 S -0.253 6.253 5 C -0.065 4.065 6 C -0.084 4.084 7 C 0.031 3.969 8 C -0.543 4.543 9 H 0.057 0.943 10 C 0.002 3.998 11 N -0.930 5.930 12 Si 0.961 3.039 13 H -0.265 1.265 14 H -0.279 1.279 15 H -0.278 1.278 16 C 0.221 3.779 17 N -0.482 5.482 18 C 0.237 3.763 19 C -0.177 4.177 20 C -0.082 4.082 21 C -0.147 4.147 22 C -0.183 4.183 23 S 0.172 5.828 24 N -0.386 5.386 25 O 0.087 5.913 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.058 0.942 32 H 0.053 0.947 33 H -0.001 1.001 34 H 0.002 0.998 35 H 0.264 0.736 36 H 0.148 0.852 37 H 0.178 0.822 38 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.361 -3.242 -31.102 31.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.098 4.098 3 H 0.164 0.836 4 S -0.026 6.026 5 C -0.213 4.213 6 C -0.123 4.123 7 C -0.008 4.008 8 C -0.581 4.581 9 H 0.075 0.925 10 C -0.196 4.196 11 N -0.570 5.570 12 Si 0.786 3.214 13 H -0.189 1.189 14 H -0.204 1.204 15 H -0.203 1.203 16 C -0.001 4.001 17 N -0.216 5.216 18 C -0.033 4.033 19 C -0.296 4.296 20 C -0.118 4.118 21 C -0.176 4.176 22 C -0.320 4.320 23 S 0.437 5.563 24 N -0.094 5.094 25 O 0.028 5.972 26 H 0.105 0.895 27 H 0.097 0.903 28 H 0.112 0.888 29 H 0.108 0.892 30 H 0.116 0.884 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.018 0.982 34 H 0.021 0.979 35 H 0.072 0.928 36 H 0.165 0.835 37 H 0.196 0.804 38 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 4.030 -2.970 -31.144 31.543 hybrid contribution -0.473 -0.544 0.975 1.212 sum 3.557 -3.514 -30.169 30.580 Atomic orbital electron populations 1.22194 0.88170 1.05027 1.05179 1.21676 1.01279 1.00765 0.86128 0.83646 1.87336 1.76111 1.38812 1.00318 1.23517 1.04472 0.99853 0.93435 1.21184 1.00376 0.99318 0.91394 1.18983 0.95412 0.94292 0.92124 1.21705 1.35139 1.08668 0.92631 0.92465 1.25898 0.95164 0.95328 1.03178 1.70077 1.40360 1.18044 1.28503 0.85459 0.78160 0.78649 0.79155 1.18904 1.20431 1.20341 1.27931 0.94509 0.81119 0.96530 1.72068 1.17619 1.29874 1.02018 1.23117 0.99915 0.83993 0.96310 1.21472 1.13707 1.00340 0.94033 1.20652 0.97791 0.99646 0.93694 1.20327 1.02742 0.96840 0.97701 1.26529 1.05397 0.97389 1.02730 1.84516 1.57490 1.05506 1.08831 1.75010 1.16662 1.22918 0.94847 1.85325 1.58234 1.26760 1.26886 0.89517 0.90341 0.88761 0.89176 0.88411 0.92363 0.92789 0.98217 0.97928 0.92755 0.83473 0.80432 0.77599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.08 71.98 0.65 -1.80 16 2 C 0.03 0.67 3.32 29.85 0.10 0.77 16 3 H 0.15 2.72 8.14 -2.39 -0.02 2.70 16 4 S -0.25 -6.96 21.06 -56.49 -1.19 -8.15 16 5 C -0.06 -1.93 5.64 71.98 0.41 -1.52 16 6 C -0.08 -3.26 5.16 30.59 0.16 -3.10 16 7 C 0.03 1.54 4.97 29.85 0.15 1.69 16 8 C -0.54 -30.30 9.11 25.60 0.23 -30.07 16 9 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 10 C 0.00 0.13 5.46 84.65 0.46 0.60 16 11 N -0.93 -55.10 13.29 21.45 0.28 -54.82 16 12 Si 0.96 43.82 29.54 68.60 2.03 45.85 16 13 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 14 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 15 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 16 C 0.22 5.57 7.06 88.35 0.62 6.19 16 17 N -0.48 -12.93 11.58 -302.26 -3.50 -16.43 16 18 C 0.24 6.39 8.02 136.95 1.10 7.49 16 19 C -0.18 -3.86 6.44 24.00 0.15 -3.71 16 20 C -0.08 -1.41 10.05 21.40 0.22 -1.19 16 21 C -0.15 -1.61 10.16 21.15 0.21 -1.39 16 22 C -0.18 -1.79 11.23 66.79 0.75 -1.04 16 23 S 0.17 2.81 23.32 -56.49 -1.32 1.49 16 24 N -0.39 -10.99 12.16 -58.77 -0.71 -11.70 16 25 O 0.09 2.42 11.19 74.46 0.83 3.25 16 26 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.09 1.45 6.92 -2.39 -0.02 1.44 16 29 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.10 2.64 7.14 -2.39 -0.02 2.62 16 31 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 33 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 34 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 35 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 36 H 0.15 2.44 8.06 -2.91 -0.02 2.41 16 37 H 0.18 0.86 8.06 -2.91 -0.02 0.83 16 38 H 0.21 0.53 8.06 -2.91 -0.02 0.50 16 Total: -1.00 -67.58 358.57 2.71 -64.88 By element: Atomic # 1 Polarization: 1.65 SS G_CDS: 1.07 Total: 2.72 kcal Atomic # 6 Polarization: -32.31 SS G_CDS: 5.22 Total: -27.09 kcal Atomic # 7 Polarization: -79.02 SS G_CDS: -3.93 Total: -82.95 kcal Atomic # 8 Polarization: 2.42 SS G_CDS: 0.83 Total: 3.25 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: -4.14 SS G_CDS: -2.51 Total: -6.65 kcal Total: -67.58 2.71 -64.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161500159.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.468 kcal (2) G-P(sol) polarization free energy of solvation -67.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds