Wall clock time and date at job start Tue Mar 31 2020 14:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86800 * 120.00065 * 2 1 4 4 H 1.48501 * 109.46926 * 240.00002 * 3 2 1 5 5 H 1.48500 * 109.47099 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47530 * 120.00019 * 3 2 1 7 7 C 1.37879 * 119.99996 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00075 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00107 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46983 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47091 * 180.02562 * 10 9 7 12 12 N 1.46494 * 109.47408 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00208 * 180.02562 * 12 11 10 14 14 O 1.21281 * 119.99761 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99992 * 180.02562 * 13 12 11 16 16 S 1.81405 * 109.46997 * 179.97438 * 15 13 12 17 17 C 1.76195 * 102.99835 * 179.97438 * 16 15 13 18 18 C 1.38978 * 120.07911 * 179.97438 * 17 16 15 19 19 C 1.38087 * 119.91880 * 180.02562 * 18 17 16 20 20 C 1.38300 * 120.07979 * 0.02681 * 19 18 17 21 21 N 1.48007 * 119.91969 * 179.97438 * 20 19 18 22 22 O 1.21803 * 119.99745 * 359.97438 * 21 20 19 23 23 O 1.21799 * 120.00052 * 179.72348 * 21 20 19 24 24 C 1.38307 * 120.16166 * 0.22510 * 20 19 18 25 25 C 1.38084 * 120.07949 * 359.49978 * 24 20 19 26 26 H 0.96998 * 120.00270 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.46999 * 60.00278 * 9 7 2 28 28 H 1.09002 * 109.46866 * 300.00246 * 9 7 2 29 29 H 1.08994 * 109.47242 * 60.00163 * 10 9 7 30 30 H 1.09002 * 109.47305 * 299.99713 * 10 9 7 31 31 H 1.09000 * 109.47030 * 59.99500 * 11 10 9 32 32 H 1.09002 * 109.46780 * 299.99996 * 11 10 9 33 33 H 0.97000 * 119.99770 * 359.97438 * 12 11 10 34 34 H 1.08994 * 109.47246 * 59.99739 * 15 13 12 35 35 H 1.09004 * 109.46839 * 299.99742 * 15 13 12 36 36 H 1.07998 * 120.04022 * 0.02562 * 18 17 16 37 37 H 1.07995 * 119.95791 * 180.02562 * 19 18 17 38 38 H 1.08000 * 119.95583 * 179.72607 * 24 20 19 39 39 H 1.07999 * 120.04149 * 180.23208 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 6 1.4803 -4.9871 0.0033 12 7 2.4322 -6.1006 0.0037 13 6 1.9830 -7.3713 0.0036 14 8 0.7906 -7.5929 0.0038 15 6 2.9623 -8.5167 0.0046 16 16 2.0553 -10.0878 0.0051 17 6 3.3440 -11.2894 0.0055 18 6 3.0333 -12.6440 0.0064 19 6 4.0458 -13.5829 0.0072 20 6 5.3678 -13.1766 0.0076 21 7 6.4503 -14.1860 0.0091 22 8 6.1763 -15.3728 0.0104 23 8 7.6151 -13.8298 0.0044 24 6 5.6808 -11.8294 0.0119 25 6 4.6736 -10.8849 0.0054 26 1 -0.4850 0.8400 0.0004 27 1 0.6240 -2.5575 -0.8880 28 1 0.6246 -2.5563 0.8920 29 1 2.8719 -3.6036 0.8926 30 1 2.8719 -3.6052 -0.8873 31 1 0.8539 -5.0454 -0.8868 32 1 0.8534 -5.0443 0.8931 33 1 3.3859 -5.9234 0.0032 34 1 3.5884 -8.4588 0.8950 35 1 3.5896 -8.4592 -0.8850 36 1 2.0011 -12.9619 0.0065 37 1 3.8051 -14.6356 0.0075 38 1 6.7143 -11.5159 0.0167 39 1 4.9187 -9.8331 0.0050 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171507467.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:06 Heat of formation + Delta-G solvation = -26.809648 kcal Electronic energy + Delta-G solvation = -22528.344501 eV Core-core repulsion = 18758.155469 eV Total energy + Delta-G solvation = -3770.189033 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.52076 -39.82035 -39.78663 -36.91332 -35.69319 -33.53524 -32.76620 -32.23942 -31.64954 -30.17440 -27.13251 -26.63202 -23.86433 -23.18374 -23.00649 -21.06508 -20.37969 -19.82470 -19.00425 -18.54143 -17.87571 -17.22172 -16.71444 -16.16962 -16.16011 -15.76636 -15.43586 -15.11971 -14.72129 -14.54685 -14.46052 -14.03899 -13.78454 -13.17580 -13.05409 -12.38261 -12.28695 -11.96788 -11.92412 -11.87372 -11.57349 -11.49063 -10.96759 -10.92646 -10.91664 -10.88746 -10.71832 -10.30601 -10.07713 -10.00963 -9.55008 -9.24127 -9.10929 -8.45629 -8.20474 -6.10150 -4.14000 -0.69899 0.32545 0.51506 0.81095 1.03445 1.57595 2.30334 2.59428 2.98243 3.25791 3.31296 3.32665 3.73761 3.87671 4.20261 4.25703 4.32460 4.32980 4.37345 4.53305 4.61919 4.95691 4.98759 5.14009 5.22582 5.25685 5.49323 5.58350 5.59453 5.97155 6.00796 6.16934 6.42040 6.60878 6.84251 7.26867 7.30023 7.52343 7.63731 7.87117 7.94976 8.27798 8.92177 9.50718 11.00948 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.029729 B = 0.001628 C = 0.001546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.630211 B =17194.779509 C =18105.357369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.526 4.526 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.116 3.884 12 N -0.716 5.716 13 C 0.526 3.474 14 O -0.524 6.524 15 C -0.166 4.166 16 S 0.022 5.978 17 C -0.056 4.056 18 C -0.104 4.104 19 C -0.031 4.031 20 C -0.062 4.062 21 N 0.032 4.968 22 O -0.164 6.164 23 O -0.165 6.165 24 C -0.027 4.027 25 C -0.143 4.143 26 H 0.262 0.738 27 H 0.020 0.980 28 H 0.019 0.981 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.401 0.599 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.154 0.846 37 H 0.158 0.842 38 H 0.156 0.844 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.612 -25.964 0.025 27.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.564 4.564 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.006 4.006 12 N -0.367 5.367 13 C 0.308 3.692 14 O -0.401 6.401 15 C -0.317 4.317 16 S 0.271 5.729 17 C -0.170 4.170 18 C -0.129 4.129 19 C -0.052 4.052 20 C -0.149 4.149 21 N 0.550 4.450 22 O -0.379 6.379 23 O -0.380 6.380 24 C -0.049 4.049 25 C -0.168 4.168 26 H 0.072 0.928 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.235 0.765 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.171 0.829 37 H 0.176 0.824 38 H 0.174 0.826 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 6.743 -25.462 0.030 26.340 hybrid contribution 2.728 1.013 0.001 2.910 sum 9.472 -24.449 0.030 26.219 Atomic orbital electron populations 1.69942 1.06071 1.26925 1.50181 1.25025 0.94868 0.99339 0.95143 0.86632 0.79571 0.83031 0.78600 1.20232 1.21206 1.20228 1.21140 0.92943 0.90902 1.51454 0.92684 1.19028 0.93812 0.90792 0.97739 1.21908 0.99853 0.93145 1.01002 1.21767 0.91738 0.84717 1.02425 1.46110 1.11248 1.05320 1.74007 1.19385 0.88603 0.83535 0.77628 1.90786 1.16008 1.84143 1.49118 1.24058 1.03202 0.95981 1.08446 1.86629 1.04580 0.93536 1.88165 1.22810 0.98222 0.98999 0.97013 1.20767 1.00214 0.89738 1.02151 1.20979 0.89250 1.02153 0.92831 1.21073 0.87586 0.88756 1.17504 1.43582 1.02118 1.01900 0.97382 1.94543 1.89473 1.00286 1.53613 1.94547 1.03669 1.86094 1.53655 1.20949 1.01894 0.89614 0.92417 1.21229 0.90546 1.00427 1.04633 0.92785 0.96210 0.96222 0.92597 0.92605 0.91353 0.91345 0.76476 0.85887 0.85882 0.82880 0.82440 0.82619 0.83547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.02 13.29 55.43 0.74 -25.28 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.53 -14.12 9.11 -34.44 -0.31 -14.44 16 8 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.12 -2.14 5.27 -26.73 -0.14 -2.28 16 11 C 0.12 1.78 5.67 -4.04 -0.02 1.76 16 12 N -0.72 -8.10 5.56 -60.30 -0.33 -8.43 16 13 C 0.53 6.06 7.85 -10.99 -0.09 5.97 16 14 O -0.52 -8.37 15.86 5.56 0.09 -8.28 16 15 C -0.17 -1.11 4.82 36.01 0.17 -0.94 16 16 S 0.02 0.17 21.06 -107.50 -2.26 -2.09 16 17 C -0.06 -0.35 6.11 -39.03 -0.24 -0.59 16 18 C -0.10 -0.59 9.79 -39.36 -0.39 -0.98 16 19 C -0.03 -0.19 9.55 -39.61 -0.38 -0.57 16 20 C -0.06 -0.49 6.85 -79.90 -0.55 -1.03 16 21 N 0.03 0.33 4.45 33.98 0.15 0.48 16 22 O -0.16 -1.80 18.44 -29.46 -0.54 -2.35 16 23 O -0.16 -1.83 18.44 -29.46 -0.54 -2.37 16 24 C -0.03 -0.17 9.55 -39.61 -0.38 -0.55 16 25 C -0.14 -0.76 9.36 -39.36 -0.37 -1.13 16 26 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 27 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.40 3.25 8.47 -40.82 -0.35 2.90 16 34 H 0.12 0.52 7.75 -51.93 -0.40 0.12 16 35 H 0.12 0.52 7.75 -51.92 -0.40 0.12 16 36 H 0.15 0.61 8.06 -52.49 -0.42 0.18 16 37 H 0.16 0.74 7.60 -52.49 -0.40 0.34 16 38 H 0.16 0.76 7.60 -52.49 -0.40 0.36 16 39 H 0.15 0.44 5.88 -52.49 -0.31 0.13 16 LS Contribution 360.34 15.07 5.43 5.43 Total: -1.00 -33.31 360.34 -9.98 -43.30 By element: Atomic # 1 Polarization: 1.34 SS G_CDS: -4.76 Total: -3.41 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: -2.92 Total: -12.83 kcal Atomic # 7 Polarization: -33.78 SS G_CDS: 0.55 Total: -33.23 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: -1.00 Total: -13.00 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 0.17 SS G_CDS: -2.26 Total: -2.09 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.31 -9.98 -43.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171507467.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.486 kcal (2) G-P(sol) polarization free energy of solvation -33.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds