Wall clock time and date at job start Tue Mar 31 2020 14:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86800 * 120.00065 * 2 1 4 4 H 1.48501 * 109.46926 * 240.00002 * 3 2 1 5 5 H 1.48500 * 109.47099 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47530 * 120.00019 * 3 2 1 7 7 C 1.37879 * 119.99996 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00075 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00107 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46983 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47091 * 180.02562 * 10 9 7 12 12 N 1.46494 * 109.47408 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00208 * 180.02562 * 12 11 10 14 14 O 1.21281 * 119.99761 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99992 * 180.02562 * 13 12 11 16 16 S 1.81405 * 109.46997 * 179.97438 * 15 13 12 17 17 C 1.76195 * 102.99835 * 179.97438 * 16 15 13 18 18 C 1.38978 * 120.07911 * 179.97438 * 17 16 15 19 19 C 1.38087 * 119.91880 * 180.02562 * 18 17 16 20 20 C 1.38300 * 120.07979 * 0.02681 * 19 18 17 21 21 N 1.48007 * 119.91969 * 179.97438 * 20 19 18 22 22 O 1.21803 * 119.99745 * 359.97438 * 21 20 19 23 23 O 1.21799 * 120.00052 * 179.72348 * 21 20 19 24 24 C 1.38307 * 120.16166 * 0.22510 * 20 19 18 25 25 C 1.38084 * 120.07949 * 359.49978 * 24 20 19 26 26 H 0.96998 * 120.00270 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.46999 * 60.00278 * 9 7 2 28 28 H 1.09002 * 109.46866 * 300.00246 * 9 7 2 29 29 H 1.08994 * 109.47242 * 60.00163 * 10 9 7 30 30 H 1.09002 * 109.47305 * 299.99713 * 10 9 7 31 31 H 1.09000 * 109.47030 * 59.99500 * 11 10 9 32 32 H 1.09002 * 109.46780 * 299.99996 * 11 10 9 33 33 H 0.97000 * 119.99770 * 359.97438 * 12 11 10 34 34 H 1.08994 * 109.47246 * 59.99739 * 15 13 12 35 35 H 1.09004 * 109.46839 * 299.99742 * 15 13 12 36 36 H 1.07998 * 120.04022 * 0.02562 * 18 17 16 37 37 H 1.07995 * 119.95791 * 180.02562 * 19 18 17 38 38 H 1.08000 * 119.95583 * 179.72607 * 24 20 19 39 39 H 1.07999 * 120.04149 * 180.23208 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 6 1.4803 -4.9871 0.0033 12 7 2.4322 -6.1006 0.0037 13 6 1.9830 -7.3713 0.0036 14 8 0.7906 -7.5929 0.0038 15 6 2.9623 -8.5167 0.0046 16 16 2.0553 -10.0878 0.0051 17 6 3.3440 -11.2894 0.0055 18 6 3.0333 -12.6440 0.0064 19 6 4.0458 -13.5829 0.0072 20 6 5.3678 -13.1766 0.0076 21 7 6.4503 -14.1860 0.0091 22 8 6.1763 -15.3728 0.0104 23 8 7.6151 -13.8298 0.0044 24 6 5.6808 -11.8294 0.0119 25 6 4.6736 -10.8849 0.0054 26 1 -0.4850 0.8400 0.0004 27 1 0.6240 -2.5575 -0.8880 28 1 0.6246 -2.5563 0.8920 29 1 2.8719 -3.6036 0.8926 30 1 2.8719 -3.6052 -0.8873 31 1 0.8539 -5.0454 -0.8868 32 1 0.8534 -5.0443 0.8931 33 1 3.3859 -5.9234 0.0032 34 1 3.5884 -8.4588 0.8950 35 1 3.5896 -8.4592 -0.8850 36 1 2.0011 -12.9619 0.0065 37 1 3.8051 -14.6356 0.0075 38 1 6.7143 -11.5159 0.0167 39 1 4.9187 -9.8331 0.0050 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171507467.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:05 Heat of formation + Delta-G solvation = -46.764629 kcal Electronic energy + Delta-G solvation = -22529.209814 eV Core-core repulsion = 18758.155469 eV Total energy + Delta-G solvation = -3771.054346 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.22547 -40.79029 -40.29530 -37.67169 -37.03181 -35.24200 -33.45786 -33.11010 -32.62029 -31.10825 -28.32289 -27.73692 -25.02090 -24.16171 -23.62283 -22.35183 -21.61876 -20.43746 -19.73307 -19.19854 -18.58884 -18.53586 -18.03459 -17.11142 -17.06065 -16.54138 -16.38167 -15.94022 -15.89021 -15.76048 -14.99422 -14.68609 -14.65326 -14.24680 -14.03501 -13.83101 -13.53468 -13.38485 -12.78066 -12.72034 -12.64263 -12.56247 -12.42369 -12.31243 -12.30413 -11.67543 -11.64292 -11.44754 -11.42250 -11.28493 -11.05491 -10.55006 -10.50115 -10.19796 -8.77261 -8.19807 -6.31249 -1.33753 -0.09400 -0.05369 0.16282 0.41436 1.05475 1.42150 1.43378 1.44362 1.52300 2.09281 2.12454 2.42084 3.14272 3.31440 3.45973 3.54651 3.75618 3.83423 3.90526 4.10044 4.15023 4.21198 4.21747 4.48350 4.54279 4.61593 4.68410 4.81058 4.93743 4.96045 5.08757 5.17075 5.35641 5.37287 5.51855 5.70679 5.84180 6.21346 6.41860 6.47081 6.86602 7.09990 7.38634 8.91793 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.029729 B = 0.001628 C = 0.001546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.630211 B =17194.779509 C =18105.357369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.965 3.035 4 H -0.266 1.266 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.542 4.542 8 H 0.068 0.932 9 C 0.021 3.979 10 C -0.102 4.102 11 C 0.130 3.870 12 N -0.704 5.704 13 C 0.523 3.477 14 O -0.574 6.574 15 C -0.151 4.151 16 S -0.022 6.022 17 C -0.049 4.049 18 C -0.104 4.104 19 C -0.031 4.031 20 C -0.078 4.078 21 N 0.034 4.966 22 O -0.187 6.187 23 O -0.185 6.185 24 C -0.028 4.028 25 C -0.135 4.135 26 H 0.263 0.737 27 H -0.008 1.008 28 H -0.008 1.008 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.421 0.579 34 H 0.158 0.842 35 H 0.158 0.842 36 H 0.168 0.832 37 H 0.168 0.832 38 H 0.169 0.831 39 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.916 -25.703 0.027 28.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.201 4.201 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.580 4.580 8 H 0.086 0.914 9 C -0.016 4.016 10 C -0.140 4.140 11 C 0.006 3.994 12 N -0.357 5.357 13 C 0.309 3.691 14 O -0.454 6.454 15 C -0.302 4.302 16 S 0.227 5.773 17 C -0.164 4.164 18 C -0.128 4.128 19 C -0.052 4.052 20 C -0.165 4.165 21 N 0.547 4.453 22 O -0.399 6.399 23 O -0.397 6.397 24 C -0.049 4.049 25 C -0.160 4.160 26 H 0.071 0.929 27 H 0.010 0.990 28 H 0.010 0.990 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.259 0.741 34 H 0.176 0.824 35 H 0.176 0.824 36 H 0.185 0.815 37 H 0.185 0.815 38 H 0.187 0.813 39 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 9.123 -25.242 0.031 26.840 hybrid contribution 1.926 0.938 0.000 2.142 sum 11.048 -24.304 0.031 26.697 Atomic orbital electron populations 1.70095 1.07919 1.27815 1.51606 1.26004 0.95715 1.03505 0.94831 0.85497 0.78201 0.78071 0.79248 1.19050 1.21353 1.19040 1.21668 0.93795 0.92024 1.50526 0.91421 1.18959 0.94542 0.93064 0.95081 1.21595 0.98397 0.91626 1.02354 1.21264 0.91919 0.85336 1.00924 1.45811 1.11594 1.04455 1.73825 1.20113 0.88769 0.84279 0.75971 1.90777 1.18613 1.84914 1.51124 1.24018 1.01814 0.92532 1.11811 1.86933 1.06387 0.95345 1.88664 1.22773 0.98052 0.98553 0.97047 1.20970 1.00819 0.89574 1.01472 1.21129 0.88729 1.02917 0.92439 1.21308 0.87232 0.88814 1.19184 1.43929 1.02492 1.02175 0.96714 1.94527 1.89542 1.01296 1.54536 1.94524 1.04715 1.86090 1.54369 1.21177 1.02920 0.88937 0.91852 1.21541 0.89570 1.01668 1.03210 0.92871 0.98979 0.98990 0.91123 0.91132 0.93042 0.93032 0.74124 0.82421 0.82414 0.81460 0.81474 0.81343 0.80605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.61 13.29 21.45 0.28 -55.33 16 2 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 3 Si 0.97 42.37 29.54 68.60 2.03 44.40 16 4 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 7 C -0.54 -28.96 9.11 25.60 0.23 -28.73 16 8 H 0.07 3.36 7.74 -2.91 -0.02 3.34 16 9 C 0.02 1.05 4.97 29.85 0.15 1.19 16 10 C -0.10 -3.48 5.27 30.60 0.16 -3.32 16 11 C 0.13 3.93 5.67 86.38 0.49 4.42 16 12 N -0.70 -14.19 5.56 -463.07 -2.57 -16.77 16 13 C 0.52 10.90 7.85 87.66 0.69 11.59 16 14 O -0.57 -18.10 15.86 -3.03 -0.05 -18.15 16 15 C -0.15 -1.43 4.82 71.24 0.34 -1.09 16 16 S -0.02 -0.31 21.06 -56.49 -1.19 -1.50 16 17 C -0.05 -0.48 6.11 22.62 0.14 -0.35 16 18 C -0.10 -0.97 9.79 22.41 0.22 -0.75 16 19 C -0.03 -0.33 9.55 22.25 0.21 -0.12 16 20 C -0.08 -1.11 6.85 36.41 0.25 -0.86 16 21 N 0.03 0.69 4.45 -46.40 -0.21 0.48 16 22 O -0.19 -4.14 18.44 18.88 0.35 -3.79 16 23 O -0.18 -4.04 18.44 18.89 0.35 -3.69 16 24 C -0.03 -0.27 9.55 22.25 0.21 -0.06 16 25 C -0.14 -0.93 9.36 22.41 0.21 -0.72 16 26 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 27 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 28 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 29 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.42 5.14 8.47 -92.71 -0.79 4.36 16 34 H 0.16 0.47 7.75 -2.39 -0.02 0.46 16 35 H 0.16 0.47 7.75 -2.39 -0.02 0.45 16 36 H 0.17 1.03 8.06 -2.91 -0.02 1.00 16 37 H 0.17 1.41 7.60 -2.91 -0.02 1.39 16 38 H 0.17 1.18 7.60 -2.91 -0.02 1.16 16 39 H 0.18 0.10 5.88 -2.91 -0.02 0.08 16 Total: -1.00 -75.41 360.34 3.06 -72.35 By element: Atomic # 1 Polarization: 0.17 SS G_CDS: 0.30 Total: 0.47 kcal Atomic # 6 Polarization: -22.25 SS G_CDS: 3.77 Total: -18.48 kcal Atomic # 7 Polarization: -69.11 SS G_CDS: -2.49 Total: -71.61 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: 0.65 Total: -25.63 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Atomic # 16 Polarization: -0.31 SS G_CDS: -1.19 Total: -1.50 kcal Total: -75.41 3.06 -72.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171507467.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.581 kcal (2) G-P(sol) polarization free energy of solvation -75.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds