Wall clock time and date at job start Tue Mar 31 2020 14:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52995 * 109.46986 * 254.18536 * 3 2 1 5 5 C 1.53006 * 109.47170 * 180.02562 * 4 3 2 6 6 S 1.81397 * 109.47247 * 179.97438 * 5 4 3 7 7 O 1.42097 * 110.54137 * 68.37407 * 6 5 4 8 8 O 1.42098 * 110.54351 * 291.62664 * 6 5 4 9 9 N 1.65592 * 104.44891 * 179.97438 * 6 5 4 10 10 C 1.46508 * 120.00163 * 65.00085 * 9 6 5 11 11 C 1.50695 * 109.47103 * 164.99854 * 10 9 6 12 12 C 1.38299 * 119.93247 * 90.00118 * 11 10 9 13 13 C 1.38101 * 120.07425 * 179.97438 * 12 11 10 14 14 C 1.38886 * 119.92536 * 0.02562 * 13 12 11 15 15 O 1.35750 * 120.06440 * 180.02562 * 14 13 12 16 16 C 1.34828 * 117.00075 * 5.53777 * 15 14 13 17 17 H 1.07993 * 120.00518 * 354.94289 * 16 15 14 18 18 C 1.38663 * 119.99751 * 174.94575 * 16 15 14 19 19 N 1.31556 * 120.00220 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99821 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47264 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47375 * 119.99795 * 20 18 16 23 23 H 1.48506 * 109.47301 * 239.99793 * 20 18 16 24 24 C 1.38874 * 119.86623 * 0.27854 * 14 13 12 25 25 C 1.38106 * 119.92542 * 359.44577 * 24 14 13 26 26 H 1.08998 * 109.46579 * 134.18539 * 3 2 1 27 27 H 1.08992 * 109.47250 * 14.18699 * 3 2 1 28 28 H 1.09000 * 109.47372 * 60.00007 * 4 3 2 29 29 H 1.09003 * 109.47376 * 299.99670 * 4 3 2 30 30 H 1.08998 * 109.46635 * 59.99857 * 5 4 3 31 31 H 1.08992 * 109.47010 * 300.00129 * 5 4 3 32 32 H 0.97000 * 120.00403 * 244.99795 * 9 6 5 33 33 H 1.08998 * 109.46632 * 45.00210 * 10 9 6 34 34 H 1.08996 * 109.47144 * 284.99941 * 10 9 6 35 35 H 1.07999 * 119.96503 * 0.02562 * 12 11 10 36 36 H 1.07992 * 120.03608 * 180.02562 * 13 12 11 37 37 H 0.96996 * 120.00178 * 179.97438 * 19 18 16 38 38 H 1.07996 * 120.03745 * 179.72497 * 24 14 13 39 39 H 1.07997 * 119.96326 * 180.27708 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1178 0.3940 1.3879 5 6 4.6479 0.3953 1.3877 6 16 5.2523 0.8624 3.0330 7 8 4.9571 -0.1550 3.9800 8 8 4.9550 2.2250 3.3052 9 7 6.9019 0.8236 2.8936 10 6 7.5843 1.7668 2.0042 11 6 9.0569 1.7831 2.3238 12 6 9.9131 0.9108 1.6768 13 6 11.2632 0.9236 1.9671 14 6 11.7607 1.8133 2.9103 15 8 13.0874 1.8286 3.1975 16 6 13.8843 1.0370 2.4517 17 1 13.4513 0.3679 1.7230 18 6 15.2599 1.0820 2.6204 19 7 15.7875 1.8974 3.5078 20 14 16.3640 -0.0142 1.5867 21 1 15.5305 -0.8319 0.6692 22 1 17.2944 0.8279 0.7928 23 1 17.1448 -0.9106 2.4767 24 6 10.8975 2.6836 3.5630 25 6 9.5492 2.6698 3.2640 26 1 2.9709 0.7171 -0.7369 27 1 2.9718 -0.9954 -0.2518 28 1 2.7548 -0.3224 2.1248 29 1 2.7541 1.3902 1.6397 30 1 5.0104 1.1120 0.6509 31 1 5.0120 -0.6006 1.1357 32 1 7.4164 0.1764 3.4008 33 1 7.1705 2.7650 2.1470 34 1 7.4407 1.4586 0.9686 35 1 9.5257 0.2195 0.9431 36 1 11.9313 0.2425 1.4611 37 1 16.7497 1.9286 3.6261 38 1 11.2807 3.3735 4.3002 39 1 8.8780 3.3494 3.7680 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171766441.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:19 Heat of formation + Delta-G solvation = -57.384268 kcal Electronic energy + Delta-G solvation = -23459.808283 eV Core-core repulsion = 19688.293435 eV Total energy + Delta-G solvation = -3771.514848 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.21929 -37.59995 -37.35598 -37.06533 -36.13133 -35.15797 -34.73793 -32.37575 -30.30928 -29.56541 -29.20752 -25.83387 -24.58044 -23.21708 -22.09230 -20.74472 -19.54912 -18.46914 -18.10906 -17.71867 -17.11874 -16.74300 -16.42532 -16.00205 -15.10225 -14.91799 -14.66555 -14.60513 -14.26117 -14.04722 -13.78472 -13.69264 -13.50756 -13.12507 -12.83495 -12.71130 -12.57290 -12.52386 -12.35527 -12.29986 -12.22848 -12.15528 -11.74907 -11.53727 -11.36782 -11.04931 -10.92017 -10.76189 -10.74237 -10.50104 -9.57437 -9.43050 -8.94583 -8.31427 -7.35492 -6.55637 -4.14426 -0.00408 2.01709 2.10306 2.24421 2.30467 2.69161 3.05956 3.07080 3.12764 3.31508 3.61372 3.86995 3.87606 4.12743 4.25409 4.32489 4.44917 4.69134 4.80583 4.90224 4.99279 5.00709 5.16210 5.19168 5.22046 5.32718 5.48455 5.59291 5.72718 5.89301 6.09991 6.30320 6.57392 6.77435 6.87253 6.97006 7.06427 7.13127 7.22590 7.32375 7.68844 7.88942 8.89662 9.58088 10.61910 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.027038 B = 0.002081 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.335965 B =13454.098659 C =14050.215101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C 0.202 3.798 3 C -0.017 4.017 4 C -0.110 4.110 5 C -0.637 4.637 6 S 2.610 3.390 7 O -0.960 6.960 8 O -0.954 6.954 9 N -1.112 6.112 10 C 0.173 3.827 11 C -0.207 4.207 12 C -0.054 4.054 13 C -0.238 4.238 14 C 0.160 3.840 15 O -0.173 6.173 16 C -0.393 4.393 17 H 0.094 0.906 18 C 0.040 3.960 19 N -0.858 5.858 20 Si 0.943 3.057 21 H -0.266 1.266 22 H -0.275 1.275 23 H -0.275 1.275 24 C -0.195 4.195 25 C -0.053 4.053 26 H 0.115 0.885 27 H 0.115 0.885 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.139 0.861 31 H 0.140 0.860 32 H 0.421 0.579 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.109 0.891 36 H 0.128 0.872 37 H 0.271 0.729 38 H 0.118 0.882 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.512 -3.823 -7.853 20.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.109 5.109 2 C -0.116 4.116 3 C -0.058 4.058 4 C -0.150 4.150 5 C -0.765 4.765 6 S 2.702 3.298 7 O -0.950 6.950 8 O -0.944 6.944 9 N -0.873 5.873 10 C 0.048 3.952 11 C -0.210 4.210 12 C -0.073 4.073 13 C -0.257 4.257 14 C 0.105 3.895 15 O -0.076 6.076 16 C -0.469 4.469 17 H 0.112 0.888 18 C -0.165 4.165 19 N -0.492 5.492 20 Si 0.767 3.233 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.201 1.201 24 C -0.214 4.214 25 C -0.073 4.073 26 H 0.133 0.867 27 H 0.133 0.867 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.157 0.843 31 H 0.158 0.842 32 H 0.256 0.744 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.127 0.873 36 H 0.146 0.854 37 H 0.081 0.919 38 H 0.136 0.864 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -20.436 -3.275 -6.941 21.829 hybrid contribution 1.523 -1.088 -1.089 2.165 sum -18.913 -4.362 -8.030 21.005 Atomic orbital electron populations 1.81272 1.13083 1.08613 1.07954 1.29190 0.95307 0.93420 0.93657 1.19256 0.81517 1.05963 0.99101 1.21238 0.91434 1.04591 0.97784 1.30698 1.05045 1.13665 1.27119 1.04957 0.73611 0.74732 0.76522 1.93614 1.83510 1.60320 1.57548 1.93615 1.83661 1.34273 1.82848 1.55753 1.24890 1.47793 1.58848 1.20012 0.91133 0.92327 0.91707 1.19059 0.93191 1.03704 1.05027 1.20610 0.92799 0.96445 0.97412 1.21152 0.95767 1.04430 1.04382 1.19453 0.85608 0.92434 0.91988 1.83980 1.12140 1.58801 1.52669 1.21401 0.87401 1.19162 1.18972 0.88849 1.25332 0.96303 0.97600 0.97299 1.70043 1.12560 1.34874 1.31757 0.85620 0.79603 0.79020 0.79013 1.19059 1.20070 1.20084 1.20238 0.92593 1.03090 1.05506 1.20577 0.94090 0.96975 0.95613 0.86671 0.86715 0.89294 0.89242 0.84282 0.84157 0.74384 0.90242 0.91911 0.87343 0.85440 0.91900 0.86358 0.86724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -4.43 18.54 42.15 0.78 -3.65 16 2 C 0.20 1.31 15.43 -20.76 -0.32 0.99 16 3 C -0.02 -0.04 5.70 -29.52 -0.17 -0.21 16 4 C -0.11 -0.40 5.18 -26.73 -0.14 -0.54 16 5 C -0.64 -2.12 6.07 37.16 0.23 -1.89 16 6 S 2.61 21.88 5.46 -107.50 -0.59 21.30 16 7 O -0.96 -11.39 18.08 -57.54 -1.04 -12.43 16 8 O -0.95 -11.39 17.50 -57.54 -1.01 -12.39 16 9 N -1.11 -10.08 5.88 -11.66 -0.07 -10.14 16 10 C 0.17 1.70 6.25 -5.19 -0.03 1.67 16 11 C -0.21 -2.93 5.28 -104.58 -0.55 -3.48 16 12 C -0.05 -0.82 9.69 -39.61 -0.38 -1.21 16 13 C -0.24 -4.64 9.17 -39.39 -0.36 -5.00 16 14 C 0.16 3.60 6.65 -39.11 -0.26 3.34 16 15 O -0.17 -4.71 9.76 0.05 0.00 -4.71 16 16 C -0.39 -10.44 9.49 30.89 0.29 -10.15 16 17 H 0.09 2.27 5.20 -52.49 -0.27 2.00 16 18 C 0.04 1.05 5.49 -17.51 -0.10 0.95 16 19 N -0.86 -24.28 13.67 55.48 0.76 -23.52 16 20 Si 0.94 19.57 29.55 -169.99 -5.02 14.55 16 21 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 22 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 23 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 24 C -0.19 -3.82 9.99 -39.39 -0.39 -4.21 16 25 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16 26 H 0.12 0.01 8.14 -51.93 -0.42 -0.42 16 27 H 0.11 0.01 8.14 -51.93 -0.42 -0.42 16 28 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.14 0.17 8.14 -51.92 -0.42 -0.25 16 31 H 0.14 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.42 3.95 8.61 -34.47 -0.30 3.66 16 33 H 0.08 0.76 7.64 -51.93 -0.40 0.37 16 34 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 35 H 0.11 1.31 8.06 -52.49 -0.42 0.88 16 36 H 0.13 2.51 5.64 -52.49 -0.30 2.21 16 37 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 38 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 39 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 360.34 15.07 5.43 5.43 Total: -1.00 -36.61 360.34 -7.95 -44.56 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -4.62 Total: 1.99 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: -2.57 Total: -20.99 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: 1.47 Total: -37.31 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -2.05 Total: -29.53 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.55 kcal Atomic # 16 Polarization: 21.88 SS G_CDS: -0.59 Total: 21.30 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.61 -7.95 -44.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171766441.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.822 kcal (2) G-P(sol) polarization free energy of solvation -36.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds