Wall clock time and date at job start Tue Mar 31 2020 14:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52995 * 109.46986 * 254.18536 * 3 2 1 5 5 C 1.53006 * 109.47170 * 180.02562 * 4 3 2 6 6 S 1.81397 * 109.47247 * 179.97438 * 5 4 3 7 7 O 1.42097 * 110.54137 * 68.37407 * 6 5 4 8 8 O 1.42098 * 110.54351 * 291.62664 * 6 5 4 9 9 N 1.65592 * 104.44891 * 179.97438 * 6 5 4 10 10 C 1.46508 * 120.00163 * 65.00085 * 9 6 5 11 11 C 1.50695 * 109.47103 * 164.99854 * 10 9 6 12 12 C 1.38299 * 119.93247 * 90.00118 * 11 10 9 13 13 C 1.38101 * 120.07425 * 179.97438 * 12 11 10 14 14 C 1.38886 * 119.92536 * 0.02562 * 13 12 11 15 15 O 1.35750 * 120.06440 * 180.02562 * 14 13 12 16 16 C 1.34828 * 117.00075 * 5.53777 * 15 14 13 17 17 H 1.07993 * 120.00518 * 354.94289 * 16 15 14 18 18 C 1.38663 * 119.99751 * 174.94575 * 16 15 14 19 19 N 1.31556 * 120.00220 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99821 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47264 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47375 * 119.99795 * 20 18 16 23 23 H 1.48506 * 109.47301 * 239.99793 * 20 18 16 24 24 C 1.38874 * 119.86623 * 0.27854 * 14 13 12 25 25 C 1.38106 * 119.92542 * 359.44577 * 24 14 13 26 26 H 1.08998 * 109.46579 * 134.18539 * 3 2 1 27 27 H 1.08992 * 109.47250 * 14.18699 * 3 2 1 28 28 H 1.09000 * 109.47372 * 60.00007 * 4 3 2 29 29 H 1.09003 * 109.47376 * 299.99670 * 4 3 2 30 30 H 1.08998 * 109.46635 * 59.99857 * 5 4 3 31 31 H 1.08992 * 109.47010 * 300.00129 * 5 4 3 32 32 H 0.97000 * 120.00403 * 244.99795 * 9 6 5 33 33 H 1.08998 * 109.46632 * 45.00210 * 10 9 6 34 34 H 1.08996 * 109.47144 * 284.99941 * 10 9 6 35 35 H 1.07999 * 119.96503 * 0.02562 * 12 11 10 36 36 H 1.07992 * 120.03608 * 180.02562 * 13 12 11 37 37 H 0.96996 * 120.00178 * 179.97438 * 19 18 16 38 38 H 1.07996 * 120.03745 * 179.72497 * 24 14 13 39 39 H 1.07997 * 119.96326 * 180.27708 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1178 0.3940 1.3879 5 6 4.6479 0.3953 1.3877 6 16 5.2523 0.8624 3.0330 7 8 4.9571 -0.1550 3.9800 8 8 4.9550 2.2250 3.3052 9 7 6.9019 0.8236 2.8936 10 6 7.5843 1.7668 2.0042 11 6 9.0569 1.7831 2.3238 12 6 9.9131 0.9108 1.6768 13 6 11.2632 0.9236 1.9671 14 6 11.7607 1.8133 2.9103 15 8 13.0874 1.8286 3.1975 16 6 13.8843 1.0370 2.4517 17 1 13.4513 0.3679 1.7230 18 6 15.2599 1.0820 2.6204 19 7 15.7875 1.8974 3.5078 20 14 16.3640 -0.0142 1.5867 21 1 15.5305 -0.8319 0.6692 22 1 17.2944 0.8279 0.7928 23 1 17.1448 -0.9106 2.4767 24 6 10.8975 2.6836 3.5630 25 6 9.5492 2.6698 3.2640 26 1 2.9709 0.7171 -0.7369 27 1 2.9718 -0.9954 -0.2518 28 1 2.7548 -0.3224 2.1248 29 1 2.7541 1.3902 1.6397 30 1 5.0104 1.1120 0.6509 31 1 5.0120 -0.6006 1.1357 32 1 7.4164 0.1764 3.4008 33 1 7.1705 2.7650 2.1470 34 1 7.4407 1.4586 0.9686 35 1 9.5257 0.2195 0.9431 36 1 11.9313 0.2425 1.4611 37 1 16.7497 1.9286 3.6261 38 1 11.2807 3.3735 4.3002 39 1 8.8780 3.3494 3.7680 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171766441.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:18 Heat of formation + Delta-G solvation = -86.112345 kcal Electronic energy + Delta-G solvation = -23461.054026 eV Core-core repulsion = 19688.293435 eV Total energy + Delta-G solvation = -3772.760591 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.76570 -38.62756 -38.04409 -38.01188 -36.88207 -35.74256 -35.51773 -34.21289 -31.75043 -30.84995 -29.49186 -27.54396 -25.79472 -23.58236 -23.50230 -22.12110 -20.17419 -19.82397 -18.98310 -18.81743 -18.24342 -17.39009 -16.97832 -16.55361 -16.37169 -16.27679 -15.87047 -15.53185 -15.30410 -15.12813 -15.03069 -14.50874 -14.36763 -14.21995 -13.95091 -13.82299 -13.43474 -13.36814 -13.11820 -13.06666 -12.95991 -12.89580 -12.78989 -12.67846 -12.39236 -12.29149 -12.08613 -11.98497 -11.69438 -11.49782 -11.13597 -10.78832 -10.20962 -9.73240 -8.93165 -8.45327 -6.13430 -0.59411 0.64790 0.67857 1.37866 1.45670 1.56111 1.79161 1.87722 1.99091 2.19501 2.85682 2.94255 3.15363 3.21351 3.41973 3.55282 3.85928 3.93360 3.98972 4.11823 4.14223 4.26070 4.52006 4.58886 4.62652 4.66748 4.68756 4.87371 4.91451 5.05088 5.12395 5.13475 5.19314 5.19866 5.35925 5.61842 5.75845 5.83690 6.05708 6.19066 6.27461 6.66058 6.99740 7.81457 8.78178 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.027038 B = 0.002081 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.335965 B =13454.098659 C =14050.215101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C 0.231 3.769 3 C -0.012 4.012 4 C -0.124 4.124 5 C -0.600 4.600 6 S 2.606 3.394 7 O -1.004 7.004 8 O -1.000 7.000 9 N -1.116 6.116 10 C 0.169 3.831 11 C -0.174 4.174 12 C -0.043 4.043 13 C -0.246 4.246 14 C 0.116 3.884 15 O -0.236 6.236 16 C -0.410 4.410 17 H 0.107 0.893 18 C -0.026 4.026 19 N -0.923 5.923 20 Si 1.020 2.980 21 H -0.246 1.246 22 H -0.271 1.271 23 H -0.272 1.272 24 C -0.213 4.213 25 C -0.056 4.056 26 H 0.150 0.850 27 H 0.148 0.852 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.178 0.822 31 H 0.177 0.823 32 H 0.419 0.581 33 H 0.085 0.915 34 H 0.116 0.884 35 H 0.159 0.841 36 H 0.121 0.879 37 H 0.272 0.728 38 H 0.105 0.895 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.986 -5.551 -11.557 24.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.191 5.191 2 C -0.086 4.086 3 C -0.053 4.053 4 C -0.164 4.164 5 C -0.733 4.733 6 S 2.705 3.295 7 O -0.995 6.995 8 O -0.990 6.990 9 N -0.876 5.876 10 C 0.044 3.956 11 C -0.176 4.176 12 C -0.062 4.062 13 C -0.266 4.266 14 C 0.065 3.935 15 O -0.142 6.142 16 C -0.486 4.486 17 H 0.124 0.876 18 C -0.223 4.223 19 N -0.561 5.561 20 Si 0.839 3.161 21 H -0.170 1.170 22 H -0.196 1.196 23 H -0.197 1.197 24 C -0.232 4.232 25 C -0.074 4.074 26 H 0.167 0.833 27 H 0.166 0.834 28 H 0.101 0.899 29 H 0.103 0.897 30 H 0.196 0.804 31 H 0.194 0.806 32 H 0.254 0.746 33 H 0.104 0.896 34 H 0.134 0.866 35 H 0.177 0.823 36 H 0.139 0.861 37 H 0.080 0.920 38 H 0.123 0.877 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -22.950 -4.984 -10.598 25.765 hybrid contribution 1.808 -0.499 0.022 1.876 sum -21.142 -5.483 -10.576 24.267 Atomic orbital electron populations 1.81305 1.15753 1.11473 1.10528 1.30073 0.96141 0.91019 0.91333 1.19609 0.78198 1.08851 0.98630 1.21360 0.91677 1.04543 0.98853 1.30379 1.04395 1.16731 1.21823 1.04805 0.73014 0.73196 0.78487 1.93562 1.83759 1.61000 1.61138 1.93560 1.83922 1.36606 1.84908 1.55547 1.25173 1.47589 1.59264 1.20235 0.87282 0.93543 0.94511 1.19651 0.96021 1.00392 1.01530 1.21095 0.90730 0.96750 0.97608 1.21325 0.97915 1.03643 1.03671 1.20022 0.84681 0.94565 0.94189 1.83948 1.14267 1.61020 1.54983 1.21902 0.88081 1.19400 1.19267 0.87591 1.26630 0.97741 0.99282 0.98684 1.70198 1.12796 1.38169 1.34923 0.84505 0.77270 0.76971 0.77317 1.16952 1.19581 1.19705 1.20440 0.94163 1.02985 1.05633 1.20967 0.92648 0.97797 0.96013 0.83285 0.83434 0.89901 0.89700 0.80447 0.80556 0.74630 0.89629 0.86628 0.82319 0.86128 0.91950 0.87676 0.84322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -9.99 18.54 20.01 0.37 -9.61 16 2 C 0.23 2.30 15.43 89.44 1.38 3.68 16 3 C -0.01 0.02 5.70 28.79 0.16 0.19 16 4 C -0.12 -0.27 5.18 30.59 0.16 -0.11 16 5 C -0.60 0.14 6.07 71.98 0.44 0.58 16 6 S 2.61 34.41 5.46 -56.49 -0.31 34.10 16 7 O -1.00 -22.01 18.08 -127.65 -2.31 -24.31 16 8 O -1.00 -21.48 17.50 -127.65 -2.23 -23.71 16 9 N -1.12 -15.08 5.88 -190.79 -1.12 -16.20 16 10 C 0.17 2.28 6.25 85.63 0.54 2.81 16 11 C -0.17 -4.18 5.28 -19.84 -0.10 -4.28 16 12 C -0.04 -1.14 9.69 22.25 0.22 -0.93 16 13 C -0.25 -9.44 9.17 22.39 0.21 -9.23 16 14 C 0.12 5.45 6.65 22.58 0.15 5.60 16 15 O -0.24 -13.78 9.76 -22.72 -0.22 -14.00 16 16 C -0.41 -22.99 9.49 67.92 0.64 -22.34 16 17 H 0.11 5.33 5.20 -2.91 -0.02 5.31 16 18 C -0.03 -1.45 5.49 84.84 0.47 -0.98 16 19 N -0.92 -55.80 13.67 21.62 0.30 -55.51 16 20 Si 1.02 41.27 29.55 68.60 2.03 43.30 16 21 H -0.25 -8.98 7.11 99.48 0.71 -8.27 16 22 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 23 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 24 C -0.21 -8.63 9.99 22.39 0.22 -8.41 16 25 C -0.06 -1.69 9.69 22.25 0.22 -1.47 16 26 H 0.15 -1.12 8.14 -2.39 -0.02 -1.14 16 27 H 0.15 -1.08 8.14 -2.39 -0.02 -1.10 16 28 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.18 -1.20 8.14 -2.39 -0.02 -1.22 16 31 H 0.18 -1.07 8.14 -2.39 -0.02 -1.09 16 32 H 0.42 6.31 8.61 -96.75 -0.83 5.48 16 33 H 0.09 1.15 7.64 -2.39 -0.02 1.13 16 34 H 0.12 0.48 8.08 -2.39 -0.02 0.46 16 35 H 0.16 2.67 8.06 -2.91 -0.02 2.65 16 36 H 0.12 4.72 5.64 -2.91 -0.02 4.70 16 37 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 38 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 39 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -92.50 360.34 1.45 -91.05 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: 0.26 Total: 9.79 kcal Atomic # 6 Polarization: -39.59 SS G_CDS: 4.69 Total: -34.89 kcal Atomic # 7 Polarization: -80.86 SS G_CDS: -0.45 Total: -81.32 kcal Atomic # 8 Polarization: -57.26 SS G_CDS: -4.76 Total: -62.02 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Atomic # 16 Polarization: 34.41 SS G_CDS: -0.31 Total: 34.10 kcal Total: -92.50 1.45 -91.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171766441.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.933 kcal (2) G-P(sol) polarization free energy of solvation -92.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds