Wall clock time and date at job start Tue Mar 31 2020 14:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00074 * 2 1 4 4 H 1.48491 * 109.47514 * 239.99990 * 3 2 1 5 5 H 1.48506 * 109.47117 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47135 * 119.99406 * 3 2 1 7 7 C 1.37880 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99936 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99814 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.47215 * 179.97438 * 9 7 2 11 11 S 1.81402 * 109.47201 * 179.97438 * 10 9 7 12 12 O 1.42104 * 110.53936 * 68.37718 * 11 10 9 13 13 O 1.42095 * 110.54104 * 291.62678 * 11 10 9 14 14 N 1.65598 * 104.44825 * 179.97438 * 11 10 9 15 15 C 1.46423 * 120.57026 * 89.99983 * 14 11 10 16 16 C 1.52918 * 109.86896 * 222.52539 * 15 14 11 17 17 C 1.50585 * 110.11980 * 43.68116 * 16 15 14 18 18 O 1.21302 * 119.80328 * 104.42206 * 17 16 15 19 19 N 1.35072 * 120.39592 * 284.39655 * 17 16 15 20 20 C 1.40036 * 120.46122 * 4.67062 * 19 17 16 21 21 C 1.38462 * 120.85996 * 228.51895 * 20 19 17 22 22 C 1.38309 * 119.84828 * 181.45620 * 21 20 19 23 23 C 1.38289 * 120.25841 * 0.28728 * 22 21 20 24 24 C 1.38307 * 120.25230 * 359.45120 * 23 22 21 25 25 C 1.38512 * 119.82990 * 0.17974 * 24 23 22 26 26 H 0.96998 * 120.00218 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47389 * 60.00362 * 9 7 2 28 28 H 1.09001 * 109.47379 * 300.00006 * 9 7 2 29 29 H 1.09000 * 109.46589 * 59.99944 * 10 9 7 30 30 H 1.09001 * 109.47011 * 300.00303 * 10 9 7 31 31 H 1.09003 * 109.40196 * 102.40753 * 15 14 11 32 32 H 1.08996 * 109.40686 * 342.64693 * 15 14 11 33 33 H 1.08997 * 109.36409 * 283.48313 * 16 15 14 34 34 H 1.09000 * 109.36203 * 163.87880 * 16 15 14 35 35 H 0.97005 * 119.76754 * 184.64045 * 19 17 16 36 36 H 1.08003 * 120.07271 * 1.48609 * 21 20 19 37 37 H 1.08004 * 119.87247 * 180.25794 * 22 21 20 38 38 H 1.07997 * 119.87366 * 179.47989 * 23 22 21 39 39 H 1.08002 * 120.08066 * 179.89721 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 16 1.3383 -5.2331 0.0013 12 8 0.6640 -5.4200 -1.2355 13 8 0.6648 -5.4193 1.2385 14 7 2.5205 -6.3927 0.0005 15 6 3.0531 -6.9141 1.2609 16 6 4.5739 -7.0443 1.1682 17 6 5.1596 -5.8209 0.5141 18 8 5.7280 -4.9895 1.1901 19 7 5.0563 -5.6441 -0.8210 20 6 4.3204 -6.5443 -1.6015 21 6 4.8525 -7.0761 -2.7640 22 6 4.0960 -7.9400 -3.5349 23 6 2.8087 -8.2699 -3.1522 24 6 2.2718 -7.7472 -1.9897 25 6 3.0258 -6.8873 -1.2084 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8897 28 1 0.6241 -2.5567 0.8903 29 1 2.8720 -3.6043 0.8905 30 1 2.8720 -3.6043 -0.8894 31 1 2.6173 -7.8931 1.4607 32 1 2.7967 -6.2325 2.0719 33 1 4.8259 -7.9253 0.5780 34 1 4.9891 -7.1521 2.1703 35 1 5.4945 -4.8880 -1.2420 36 1 5.8561 -6.8172 -3.0677 37 1 4.5121 -8.3584 -4.4395 38 1 2.2205 -8.9385 -3.7633 39 1 1.2655 -8.0053 -1.6944 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173160475.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:08 Heat of formation + Delta-G solvation = -73.931847 kcal Electronic energy + Delta-G solvation = -26264.143293 eV Core-core repulsion = 22491.910888 eV Total energy + Delta-G solvation = -3772.232405 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.10287 -38.86193 -36.82566 -36.37952 -35.58345 -35.04646 -33.90411 -31.73863 -31.18084 -30.25454 -28.63129 -25.62492 -24.89465 -22.97016 -22.38224 -21.44201 -20.62567 -19.11445 -17.94454 -17.71596 -17.07904 -16.75427 -16.60361 -16.22800 -15.41145 -15.27418 -14.85437 -14.57335 -14.51742 -14.37688 -13.90320 -13.49482 -13.43693 -13.12751 -12.98009 -12.51471 -12.20593 -11.93945 -11.79747 -11.78034 -11.72537 -11.64126 -11.30777 -11.06506 -10.99500 -10.59628 -10.43193 -10.39574 -10.08055 -9.87546 -9.62285 -9.24464 -8.91897 -8.49680 -8.38758 -6.12025 -4.17445 0.48286 0.94722 1.09913 2.36221 2.74649 2.94761 3.28892 3.33091 3.35855 3.42764 4.13342 4.21037 4.33089 4.38411 4.62552 4.64654 4.70744 4.81575 4.89821 5.10719 5.22463 5.23221 5.30037 5.36047 5.42820 5.55777 5.58522 5.68426 5.81152 5.95879 6.09327 6.21981 6.37620 6.44578 6.58038 6.76849 7.05726 7.26707 7.32653 7.81245 7.91556 8.17132 8.85527 9.47305 10.99018 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.014466 B = 0.004528 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.168123 B = 6181.772683 C = 6493.862289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.901 3.099 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.519 4.519 8 H 0.061 0.939 9 C 0.032 3.968 10 C -0.582 4.582 11 S 2.579 3.421 12 O -0.950 6.950 13 O -0.956 6.956 14 N -0.963 5.963 15 C 0.131 3.869 16 C -0.154 4.154 17 C 0.526 3.474 18 O -0.521 6.521 19 N -0.674 5.674 20 C 0.139 3.861 21 C -0.128 4.128 22 C -0.096 4.096 23 C -0.119 4.119 24 C -0.075 4.075 25 C 0.127 3.873 26 H 0.266 0.734 27 H 0.033 0.967 28 H 0.033 0.967 29 H 0.119 0.881 30 H 0.118 0.882 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.115 0.885 35 H 0.413 0.587 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.894 -20.204 -4.662 22.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.558 4.558 8 H 0.079 0.921 9 C -0.008 4.008 10 C -0.716 4.716 11 S 2.680 3.320 12 O -0.940 6.940 13 O -0.946 6.946 14 N -0.793 5.793 15 C 0.006 3.994 16 C -0.196 4.196 17 C 0.314 3.686 18 O -0.395 6.395 19 N -0.323 5.323 20 C 0.042 3.958 21 C -0.149 4.149 22 C -0.115 4.115 23 C -0.138 4.138 24 C -0.096 4.096 25 C 0.032 3.968 26 H 0.075 0.925 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.138 0.862 30 H 0.136 0.864 31 H 0.106 0.894 32 H 0.118 0.882 33 H 0.114 0.886 34 H 0.134 0.866 35 H 0.252 0.748 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.149 0.851 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 9.005 -19.972 -4.052 22.280 hybrid contribution 1.227 1.565 -0.278 2.008 sum 10.231 -18.407 -4.330 21.500 Atomic orbital electron populations 1.69940 1.06110 1.27334 1.49547 1.25051 0.94969 0.99506 0.94828 0.86519 0.79495 0.82434 0.78787 1.20081 1.21030 1.20005 1.20943 0.93059 0.89615 1.52229 0.92071 1.18957 0.92537 0.90458 0.98800 1.30443 1.13600 1.17398 1.10120 1.06282 0.74820 0.76453 0.74396 1.93556 1.70624 1.84930 1.44889 1.93554 1.70701 1.85161 1.45183 1.55924 1.58931 1.55848 1.08562 1.21317 0.91033 1.02104 0.84900 1.22125 0.96976 0.96824 1.03683 1.20716 0.78663 0.87809 0.81393 1.90815 1.42311 1.44670 1.61703 1.43676 1.52744 1.28464 1.07454 1.17946 0.90313 0.94219 0.93342 1.20924 1.00463 0.98544 0.94969 1.21096 0.94180 0.97027 0.99241 1.21128 0.95667 1.00705 0.96344 1.21313 1.00060 0.93570 0.94682 1.17354 0.91475 0.99379 0.88613 0.92461 0.94859 0.94863 0.86213 0.86388 0.89442 0.88155 0.88632 0.86637 0.74787 0.84990 0.85163 0.85097 0.84699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.81 13.29 55.43 0.74 -26.07 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.74 9.11 -34.44 -0.31 -15.05 16 8 H 0.06 1.67 7.74 -52.48 -0.41 1.27 16 9 C 0.03 0.83 4.98 -27.88 -0.14 0.69 16 10 C -0.58 -11.92 6.12 37.16 0.23 -11.69 16 11 S 2.58 47.80 5.37 -107.50 -0.58 47.23 16 12 O -0.95 -19.45 16.53 -57.54 -0.95 -20.40 16 13 O -0.96 -19.72 16.89 -57.54 -0.97 -20.69 16 14 N -0.96 -13.37 2.55 -58.55 -0.15 -13.52 16 15 C 0.13 1.46 6.08 -4.13 -0.03 1.43 16 16 C -0.15 -1.50 5.46 -27.98 -0.15 -1.65 16 17 C 0.53 6.87 7.01 -10.91 -0.08 6.80 16 18 O -0.52 -8.79 17.92 5.54 0.10 -8.69 16 19 N -0.67 -7.83 5.25 -9.73 -0.05 -7.88 16 20 C 0.14 1.52 5.56 -83.53 -0.46 1.05 16 21 C -0.13 -1.10 9.99 -39.47 -0.39 -1.49 16 22 C -0.10 -0.74 10.04 -39.54 -0.40 -1.14 16 23 C -0.12 -1.04 10.04 -39.54 -0.40 -1.44 16 24 C -0.08 -0.86 9.07 -39.45 -0.36 -1.21 16 25 C 0.13 1.59 4.57 -83.50 -0.38 1.21 16 26 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 27 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.12 2.35 8.14 -51.92 -0.42 1.93 16 30 H 0.12 2.24 8.14 -51.92 -0.42 1.82 16 31 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.10 1.18 7.38 -51.93 -0.38 0.80 16 33 H 0.10 0.75 7.64 -51.93 -0.40 0.35 16 34 H 0.12 0.93 8.13 -51.93 -0.42 0.51 16 35 H 0.41 4.46 8.92 -40.82 -0.36 4.10 16 36 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 37 H 0.13 0.65 8.06 -52.48 -0.42 0.22 16 38 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.14 1.54 8.04 -52.49 -0.42 1.12 16 LS Contribution 343.17 15.07 5.17 5.17 Total: -1.00 -36.58 343.17 -9.59 -46.18 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -4.91 Total: 2.89 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: -2.97 Total: -20.89 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: 0.54 Total: -47.47 kcal Atomic # 8 Polarization: -47.97 SS G_CDS: -1.82 Total: -49.79 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: 47.80 SS G_CDS: -0.58 Total: 47.23 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -36.58 -9.59 -46.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173160475.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.755 kcal (2) G-P(sol) polarization free energy of solvation -36.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds